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Sed0006121 (gene) of Chayote v1 genome

Gene IDSed0006121
OrganismSechium edule (Chayote v1)
DescriptionLYR motif-containing protein 2
Genome locationLG01:18384973..18386592
RNA-Seq ExpressionSed0006121
SyntenySed0006121
Gene Ontology termsNA
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591251.1 LYR motif-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia]3.5e-3091.36Show/hide
Query:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
        MVL+LDLQEFILRARVLKLYRQALRT  KAPVHAREELRHTIRQEMEN+RSC+DRQKVRFLLSEG+ERLKRLDEMLDMQG+
Subjt:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
XP_022936861.1 uncharacterized protein LOC111443321 [Cucurbita moschata]4.6e-3091.36Show/hide
Query:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
        MVL+LDLQEFILRARVLKLYRQALRT  KAPVHAREELRHTIRQEMEN+R C+DRQKVRFLLSEGIERLKRLDEMLDMQG+
Subjt:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
XP_022941069.1 uncharacterized protein LOC111446466 [Cucurbita moschata]1.6e-3092.59Show/hide
Query:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
        MVLSLDLQEFILRARVLKLYR ALRTA KAPVHAREELRHTIRQEMEN+R CN+RQKVRFLLSEGIERLKRL+EMLDMQGN
Subjt:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
XP_023524988.1 uncharacterized protein LOC111788747 [Cucurbita pepo subsp. pepo]1.6e-3092.59Show/hide
Query:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
        MVL LDLQEFILRARVLKLYRQALRTA KAPVHAREELRHTIRQEMEN+R CN+RQKVRFLLSEGIERLKRL+EMLDMQGN
Subjt:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
XP_023535371.1 uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo]1.6e-3092.59Show/hide
Query:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
        MVL+LDLQEFILRARVLKLYRQALRT  KAPVHAREELRHTIRQEMEN+RSC+DRQKVRFLLSEGIERLKRLDEMLDMQG+
Subjt:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
TrEMBL top hitse value%identityAlignment
A0A6J1CHJ1 uncharacterized protein LOC1110112183.2e-2987.65Show/hide
Query:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
        MV+SLDL EFILRARVLKL+RQALRTA KAPVHAREELRHTIRQEMEN+RSCND+QKVR+L+SEGIE LKRLDEMLDMQG+
Subjt:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
A0A6J1F8N3 uncharacterized protein LOC1114433212.2e-3091.36Show/hide
Query:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
        MVL+LDLQEFILRARVLKLYRQALRT  KAPVHAREELRHTIRQEMEN+R C+DRQKVRFLLSEGIERLKRLDEMLDMQG+
Subjt:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
A0A6J1FM54 uncharacterized protein LOC1114464667.7e-3192.59Show/hide
Query:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
        MVLSLDLQEFILRARVLKLYR ALRTA KAPVHAREELRHTIRQEMEN+R CN+RQKVRFLLSEGIERLKRL+EMLDMQGN
Subjt:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
A0A6J1IFA5 uncharacterized protein LOC1114764186.5e-3090.12Show/hide
Query:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
        MVL+LDLQEFILRARVLKLYRQALRT  KAPVHAREELRHTIRQEMEN+RSC+DRQK+RFLLSEG ERLKRLDEMLDMQG+
Subjt:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
A0A6J1IY12 uncharacterized protein LOC1114809627.2e-2990.12Show/hide
Query:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
        MVLSLDLQEFILRARVLKLYRQALR A KAPVHAREELR  IRQEMEN+R CN+RQKVRFLLSEGIERLKRL+EMLDMQGN
Subjt:  MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G76065.1 LYR family of Fe/S cluster biogenesis protein3.3e-2670Show/hide
Query:  VLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN
        ++ LDLQ FILRARVLKLYRQAL+ A +APVH R EL+ T+RQEME +R CND+QK+R+L+SEG+ER+K LDEMLDMQG+
Subjt:  VLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTCTCCCTTGATTTACAGGAATTTATTCTCCGTGCAAGGGTGTTGAAACTGTACAGGCAGGCTTTAAGAACGGCTGGAAAAGCTCCTGTTCACGCTCGAGAGGA
ACTGAGGCATACGATCAGGCAAGAAATGGAAAACCACCGCAGCTGCAATGATAGACAGAAAGTAAGGTTTCTGCTCAGCGAAGGAATAGAGAGATTGAAGCGTTTAGATG
AGATGTTGGATATGCAGGGTAATTAA
mRNA sequenceShow/hide mRNA sequence
CCCAGATCGTTGTCTTCATTGATGACCTTAGAAATCGGAATTGAGCGACAGAAGCAATAATACGTTCAATTGAATCAGAAATGGAATTCTACAGAGTTTAATCCTCAGTG
AACTGGACGAACTTGTATTCGCCTCTTCTCTTTCTCCTTTACGGAAGAGAAGTCGCCAATCGCCATGGTTCTCTCCCTTGATTTACAGGAATTTATTCTCCGTGCAAGGG
TGTTGAAACTGTACAGGCAGGCTTTAAGAACGGCTGGAAAAGCTCCTGTTCACGCTCGAGAGGAACTGAGGCATACGATCAGGCAAGAAATGGAAAACCACCGCAGCTGC
AATGATAGACAGAAAGTAAGGTTTCTGCTCAGCGAAGGAATAGAGAGATTGAAGCGTTTAGATGAGATGTTGGATATGCAGGGTAATTAATATTGCTAAGGTATGTTTTC
ATTTATCCACTGAATTCAACACAACATTTCATGATCATAATCTTGTTACCACCCATTCCAGTCATGTTCCTTGATTTTAGTTCAACTCGTGGGAAAATCGAACATCTAAC
CTCGGTGTTTATTTTTTATGTCAACCGAACTATTCTGATTAATCAAATCTCTTGGCAGAGGATAATGAGCGTTAAGATTGA
Protein sequenceShow/hide protein sequence
MVLSLDLQEFILRARVLKLYRQALRTAGKAPVHAREELRHTIRQEMENHRSCNDRQKVRFLLSEGIERLKRLDEMLDMQGN