; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0006131 (gene) of Chayote v1 genome

Gene IDSed0006131
OrganismSechium edule (Chayote v1)
DescriptionGag/pol protein
Genome locationLG02:11083915..11096677
RNA-Seq ExpressionSed0006131
SyntenySed0006131
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]8.8e-2450.81Show/hide
Query:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSLA----------HDRWQNYNVKARVYILASVSNILAKKLENMM-----MKALHEMFGQPSSQ
        ++ DKL G NY +WKN I+T+L++DD +FVL EECP   A          ++RW   N KAR YILAS+S +LAKK E+M+     M +L EMFGQ S Q
Subjt:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSLA----------HDRWQNYNVKARVYILASVSNILAKKLENMM-----MKALHEMFGQPSSQ

Query:  VKHDALLVIHGAKMKSGMSVMEHV
        +KHDAL  I+ A+M  G SV EHV
Subjt:  VKHDALLVIHGAKMKSGMSVMEHV

TYK07761.1 gag/pol protein [Cucumis melo var. makuwa]8.8e-2450.81Show/hide
Query:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSLA----------HDRWQNYNVKARVYILASVSNILAKKLENMM-----MKALHEMFGQPSSQ
        ++ DKL G NY +WKN I+T+L++DD +FVL EECP   A          ++RW   N KAR YILAS+S +LAKK E+M+     M +L EMFGQ S Q
Subjt:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSLA----------HDRWQNYNVKARVYILASVSNILAKKLENMM-----MKALHEMFGQPSSQ

Query:  VKHDALLVIHGAKMKSGMSVMEHV
        +KHDAL  I+ A+M  G SV EHV
Subjt:  VKHDALLVIHGAKMKSGMSVMEHV

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]8.8e-2450.81Show/hide
Query:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSLA----------HDRWQNYNVKARVYILASVSNILAKKLENMM-----MKALHEMFGQPSSQ
        ++ DKL G NY +WKN I+T+L++DD +FVL EECP   A          ++RW   N KAR YILAS+S +LAKK E+M+     M +L EMFGQ S Q
Subjt:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSLA----------HDRWQNYNVKARVYILASVSNILAKKLENMM-----MKALHEMFGQPSSQ

Query:  VKHDALLVIHGAKMKSGMSVMEHV
        +KHDAL  I+ A+M  G SV EHV
Subjt:  VKHDALLVIHGAKMKSGMSVMEHV

XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]6.8e-2450Show/hide
Query:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECP----------LSLAHDRWQNYNVKARVYILASVSNILAKKLENM-----MMKALHEMFGQPSSQ
        ++  +L GENY  WK+N++TILV+DD KFVL E+CP          + +A+DRW   N KA+VYILAS+S++LAKK E+      +M +L  MFGQPSSQ
Subjt:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECP----------LSLAHDRWQNYNVKARVYILASVSNILAKKLENM-----MMKALHEMFGQPSSQ

Query:  VKHDALLVIHGAKMKSGMSVMEHV
         +H+AL  I+ ++MK G SV EHV
Subjt:  VKHDALLVIHGAKMKSGMSVMEHV

XP_022158791.1 uncharacterized protein LOC111025258 [Momordica charantia]1.0e-2450Show/hide
Query:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSL----------AHDRWQNYNVKARVYILASVSNILAKKLENM-----MMKALHEMFGQPSSQ
        +++DKL G+NY  WK+N++TILV+DD +FVLTEECP +L          AHDRW   N KARVYILAS+S++L+KK E +     +M +L  +FGQPS+ 
Subjt:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSL----------AHDRWQNYNVKARVYILASVSNILAKKLENM-----MMKALHEMFGQPSSQ

Query:  VKHDALLVIHGAKMKSGMSVMEHV
        + HDA+  ++  +MK G SV EHV
Subjt:  VKHDALLVIHGAKMKSGMSVMEHV

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein4.3e-2450.81Show/hide
Query:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSLA----------HDRWQNYNVKARVYILASVSNILAKKLENMM-----MKALHEMFGQPSSQ
        ++ DKL G NY +WKN I+T+L++DD +FVL EECP   A          ++RW   N KAR YILAS+S +LAKK E+M+     M +L EMFGQ S Q
Subjt:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSLA----------HDRWQNYNVKARVYILASVSNILAKKLENMM-----MKALHEMFGQPSSQ

Query:  VKHDALLVIHGAKMKSGMSVMEHV
        +KHDAL  I+ A+M  G SV EHV
Subjt:  VKHDALLVIHGAKMKSGMSVMEHV

A0A5A7TU93 Gag/pol protein4.3e-2450.81Show/hide
Query:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSLA----------HDRWQNYNVKARVYILASVSNILAKKLENMM-----MKALHEMFGQPSSQ
        ++ DKL G NY +WKN I+T+L++DD +FVL EECP   A          ++RW   N KAR YILAS+S +LAKK E+M+     M +L EMFGQ S Q
Subjt:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSLA----------HDRWQNYNVKARVYILASVSNILAKKLENMM-----MKALHEMFGQPSSQ

Query:  VKHDALLVIHGAKMKSGMSVMEHV
        +KHDAL  I+ A+M  G SV EHV
Subjt:  VKHDALLVIHGAKMKSGMSVMEHV

A0A5D3CPJ6 Gag/pol protein4.3e-2450.81Show/hide
Query:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSLA----------HDRWQNYNVKARVYILASVSNILAKKLENMM-----MKALHEMFGQPSSQ
        ++ DKL G NY +WKN I+T+L++DD +FVL EECP   A          ++RW   N KAR YILAS+S +LAKK E+M+     M +L EMFGQ S Q
Subjt:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSLA----------HDRWQNYNVKARVYILASVSNILAKKLENMM-----MKALHEMFGQPSSQ

Query:  VKHDALLVIHGAKMKSGMSVMEHV
        +KHDAL  I+ A+M  G SV EHV
Subjt:  VKHDALLVIHGAKMKSGMSVMEHV

A0A6J1DFZ2 uncharacterized protein LOC1110200953.3e-2450Show/hide
Query:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECP----------LSLAHDRWQNYNVKARVYILASVSNILAKKLENM-----MMKALHEMFGQPSSQ
        ++  +L GENY  WK+N++TILV+DD KFVL E+CP          + +A+DRW   N KA+VYILAS+S++LAKK E+      +M +L  MFGQPSSQ
Subjt:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECP----------LSLAHDRWQNYNVKARVYILASVSNILAKKLENM-----MMKALHEMFGQPSSQ

Query:  VKHDALLVIHGAKMKSGMSVMEHV
         +H+AL  I+ ++MK G SV EHV
Subjt:  VKHDALLVIHGAKMKSGMSVMEHV

A0A6J1E205 uncharacterized protein LOC1110252585.1e-2550Show/hide
Query:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSL----------AHDRWQNYNVKARVYILASVSNILAKKLENM-----MMKALHEMFGQPSSQ
        +++DKL G+NY  WK+N++TILV+DD +FVLTEECP +L          AHDRW   N KARVYILAS+S++L+KK E +     +M +L  +FGQPS+ 
Subjt:  MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSL----------AHDRWQNYNVKARVYILASVSNILAKKLENM-----MMKALHEMFGQPSSQ

Query:  VKHDALLVIHGAKMKSGMSVMEHV
        + HDA+  ++  +MK G SV EHV
Subjt:  VKHDALLVIHGAKMKSGMSVMEHV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACTGATAAATTAACTGGAGAAAACTATACTACATGGAAAAACAATATCGACACGATTCTTGTCGTCGATGACAAGAAGTTTGTTCTCACGGAGGAATGTCCTCT
ATCACTGGCACATGACCGTTGGCAGAATTATAACGTAAAGGCAAGGGTCTATATCTTGGCAAGTGTCTCGAACATTCTAGCCAAGAAACTAGAGAACATGATGATGAAAG
CCCTTCATGAGATGTTTGGGCAACCATCATCTCAGGTAAAACATGATGCTCTCTTGGTCATTCATGGTGCTAAGATGAAGTCAGGAATGTCAGTAATGGAGCATGTCTTC
AGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAACTGATAAATTAACTGGAGAAAACTATACTACATGGAAAAACAATATCGACACGATTCTTGTCGTCGATGACAAGAAGTTTGTTCTCACGGAGGAATGTCCTCT
ATCACTGGCACATGACCGTTGGCAGAATTATAACGTAAAGGCAAGGGTCTATATCTTGGCAAGTGTCTCGAACATTCTAGCCAAGAAACTAGAGAACATGATGATGAAAG
CCCTTCATGAGATGTTTGGGCAACCATCATCTCAGGTAAAACATGATGCTCTCTTGGTCATTCATGGTGCTAAGATGAAGTCAGGAATGTCAGTAATGGAGCATGTCTTC
AGATGA
Protein sequenceShow/hide protein sequence
MSTDKLTGENYTTWKNNIDTILVVDDKKFVLTEECPLSLAHDRWQNYNVKARVYILASVSNILAKKLENMMMKALHEMFGQPSSQVKHDALLVIHGAKMKSGMSVMEHVF
R