; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0006160 (gene) of Chayote v1 genome

Gene IDSed0006160
OrganismSechium edule (Chayote v1)
DescriptionAlba domain-containing protein
Genome locationLG12:6409060..6409941
RNA-Seq ExpressionSed0006160
SyntenySed0006160
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134424.1 uncharacterized protein At2g34160 [Cucumis sativus]1.2e-4976.71Show/hide
Query:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM
        + +VVSEA  EV  EI  E E+L+VA PD EVKEIAVLTEFKKK+N I VSNVKKPFF+YYNLSKR+IKQYNE+EL+ALGMAIPT VTIAEILK+NGLA 
Subjt:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM

Query:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED
        +K L I+SVS KNGEN +LVMKPKIEIALVN EKIKNI+TA TSED
Subjt:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED

XP_008438573.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo]2.1e-5178.77Show/hide
Query:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM
        +  VVSEAT EV  EI  E EKL+V  PD EVKEIAVLTEFKKK+N I VSNVKKPFF+YYNLSKR+IKQYNE+EL+ALGMAIPT VTIAEILK+NGLA 
Subjt:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM

Query:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED
        +KNLTI+SVS KNGEN +LVMKPKIEIALVN EKIKNI+TA TSED
Subjt:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED

XP_022147424.1 uncharacterized protein At2g34160-like [Momordica charantia]6.0e-5482.99Show/hide
Query:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM
        +A+VVSEAT EV  EI  E EKL+V  PD +VKEIAVLTEFKKKKN I VSNVKKPFF+YYNLSKRYIKQYNE+EL+ALGMAIPT VTIAEILKKNGLA 
Subjt:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM

Query:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSEDC
        EKNLTI+SVS KNGENDRLVMKPKIEIALVN EK KNI TATTSEDC
Subjt:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSEDC

XP_022924600.1 uncharacterized protein At2g34160-like [Cucurbita moschata]1.4e-5077.4Show/hide
Query:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM
        + +VVSEA +E+  EI  E EKL+V  PD EVKEIAVLTE KKK+N I VSNVKKPFF+YYNLSKRYIKQYNE+EL+ALGMAIPT VTIAEILKKNGLA 
Subjt:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM

Query:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED
        +K LTI+SVS KNGENDRLVMKPKIEIAL+N EK+K I+TATTSED
Subjt:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED

XP_022980835.1 uncharacterized protein At2g34160-like [Cucurbita maxima]2.1e-5178.77Show/hide
Query:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM
        + +VVSEAT+EV  EI  E EKL+V  PD EVKEIAVLTE KKK+N I VSNVKKPFF+YYNLSKRYIKQYNE+EL+ALGMAIPT VTIAEILKKNGLA 
Subjt:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM

Query:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED
        +K LTI+SVS KNGENDRLVMKPKIEIAL+N EK+K I+TATTSED
Subjt:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED

TrEMBL top hitse value%identityAlignment
A0A1S3AXD3 uncharacterized protein At2g34160-like1.0e-5178.77Show/hide
Query:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM
        +  VVSEAT EV  EI  E EKL+V  PD EVKEIAVLTEFKKK+N I VSNVKKPFF+YYNLSKR+IKQYNE+EL+ALGMAIPT VTIAEILK+NGLA 
Subjt:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM

Query:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED
        +KNLTI+SVS KNGEN +LVMKPKIEIALVN EKIKNI+TA TSED
Subjt:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED

A0A5D3CZ81 Alba DNA/RNA-binding protein1.0e-5178.77Show/hide
Query:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM
        +  VVSEAT EV  EI  E EKL+V  PD EVKEIAVLTEFKKK+N I VSNVKKPFF+YYNLSKR+IKQYNE+EL+ALGMAIPT VTIAEILK+NGLA 
Subjt:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM

Query:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED
        +KNLTI+SVS KNGEN +LVMKPKIEIALVN EKIKNI+TA TSED
Subjt:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED

A0A6J1D0Y9 uncharacterized protein At2g34160-like2.9e-5482.99Show/hide
Query:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM
        +A+VVSEAT EV  EI  E EKL+V  PD +VKEIAVLTEFKKKKN I VSNVKKPFF+YYNLSKRYIKQYNE+EL+ALGMAIPT VTIAEILKKNGLA 
Subjt:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM

Query:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSEDC
        EKNLTI+SVS KNGENDRLVMKPKIEIALVN EK KNI TATTSEDC
Subjt:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSEDC

A0A6J1EFH1 uncharacterized protein At2g34160-like6.7e-5177.4Show/hide
Query:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM
        + +VVSEA +E+  EI  E EKL+V  PD EVKEIAVLTE KKK+N I VSNVKKPFF+YYNLSKRYIKQYNE+EL+ALGMAIPT VTIAEILKKNGLA 
Subjt:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM

Query:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED
        +K LTI+SVS KNGENDRLVMKPKIEIAL+N EK+K I+TATTSED
Subjt:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED

A0A6J1IXN8 uncharacterized protein At2g34160-like1.0e-5178.77Show/hide
Query:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM
        + +VVSEAT+EV  EI  E EKL+V  PD EVKEIAVLTE KKK+N I VSNVKKPFF+YYNLSKRYIKQYNE+EL+ALGMAIPT VTIAEILKKNGLA 
Subjt:  AAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAM

Query:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED
        +K LTI+SVS KNGENDRLVMKPKIEIAL+N EK+K I+TATTSED
Subjt:  EKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSED

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341602.2e-2250.86Show/hide
Query:  DEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAMEKNLTIASVSSKNGENDRLVMKPKIEIAL
        D V  + + T+  +KKN I VSN KKP FFY NL+KRY++QYN++EL+ALGMAI T VT+ EILK NG A+EK +  ++V  K+    R V K KIEI L
Subjt:  DEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAMEKNLTIASVSSKNGENDRLVMKPKIEIAL

Query:  VNVEKIKNIATATTSE
        V  EK   +  A   E
Subjt:  VNVEKIKNIATATTSE

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein4.5e-2353.4Show/hide
Query:  KKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAMEKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATAT
        +KKN I VSN KKP FFY NL+KRY++QY ++EL+ALGMAI T VT+AEILK NG A+EK +  ++V  K+    R V K KIEI L   EK   +  A 
Subjt:  KKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAMEKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATAT

Query:  TSE
          E
Subjt:  TSE

AT2G34160.1 Alba DNA/RNA-binding protein1.5e-2350.86Show/hide
Query:  DEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAMEKNLTIASVSSKNGENDRLVMKPKIEIAL
        D V  + + T+  +KKN I VSN KKP FFY NL+KRY++QYN++EL+ALGMAI T VT+ EILK NG A+EK +  ++V  K+    R V K KIEI L
Subjt:  DEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAMEKNLTIASVSSKNGENDRLVMKPKIEIAL

Query:  VNVEKIKNIATATTSE
        V  EK   +  A   E
Subjt:  VNVEKIKNIATATTSE

AT3G04620.1 Alba DNA/RNA-binding protein1.7e-2248.39Show/hide
Query:  EKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAMEKNLTIASVSSKNGENDRLV
        E+ +V  P        V T    KKN I VSN KKP FFY NL+KRYI+Q+NE+EL+ALGMAI T VTI+EILK NGLA EK +  ++V  K+    ++V
Subjt:  EKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIELTALGMAIPTAVTIAEILKKNGLAMEKNLTIASVSSKNGENDRLV

Query:  MKPKIEIALVNVEKIKNIATATTS
         K KIEI L   +K  ++    T+
Subjt:  MKPKIEIALVNVEKIKNIATATTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCCCTCACCGTCGTTCCAGAACCCACCGCCGTCGTTGTGTCAGAATCCGCCGCCGTCGTTGTTTCAGAATCCACCGCCGTCGTTGTTTCAGAATCCGCCGCCGT
CGTTGTTTCAGAAGCCACCGCTGAGGTCGATCGTGAAATCCACGAAGAGTTCGAAAAGCTCGTCGTCGCTGTTCCCGACGATGAGGTTAAGGAGATCGCCGTCTTGACGG
AGTTTAAGAAGAAGAAGAACCTAATTCATGTTTCCAATGTCAAGAAGCCATTCTTCTTCTACTACAATCTCTCCAAGAGATACATTAAGCAGTACAATGAAATCGAGCTT
ACTGCTTTGGGAATGGCTATACCTACTGCAGTGACGATTGCCGAGATTCTGAAGAAAAATGGATTGGCAATGGAGAAGAACTTGACTATCGCTTCTGTCAGTTCCAAGAA
TGGGGAAAATGATAGGCTGGTTATGAAACCTAAGATTGAGATTGCACTGGTAAATGTGGAAAAGATCAAGAACATTGCAACTGCTACAACAAGTGAAGATTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCCCTCACCGTCGTTCCAGAACCCACCGCCGTCGTTGTGTCAGAATCCGCCGCCGTCGTTGTTTCAGAATCCACCGCCGTCGTTGTTTCAGAATCCGCCGCCGT
CGTTGTTTCAGAAGCCACCGCTGAGGTCGATCGTGAAATCCACGAAGAGTTCGAAAAGCTCGTCGTCGCTGTTCCCGACGATGAGGTTAAGGAGATCGCCGTCTTGACGG
AGTTTAAGAAGAAGAAGAACCTAATTCATGTTTCCAATGTCAAGAAGCCATTCTTCTTCTACTACAATCTCTCCAAGAGATACATTAAGCAGTACAATGAAATCGAGCTT
ACTGCTTTGGGAATGGCTATACCTACTGCAGTGACGATTGCCGAGATTCTGAAGAAAAATGGATTGGCAATGGAGAAGAACTTGACTATCGCTTCTGTCAGTTCCAAGAA
TGGGGAAAATGATAGGCTGGTTATGAAACCTAAGATTGAGATTGCACTGGTAAATGTGGAAAAGATCAAGAACATTGCAACTGCTACAACAAGTGAAGATTGTTGA
Protein sequenceShow/hide protein sequence
MESLTVVPEPTAVVVSESAAVVVSESTAVVVSESAAVVVSEATAEVDREIHEEFEKLVVAVPDDEVKEIAVLTEFKKKKNLIHVSNVKKPFFFYYNLSKRYIKQYNEIEL
TALGMAIPTAVTIAEILKKNGLAMEKNLTIASVSSKNGENDRLVMKPKIEIALVNVEKIKNIATATTSEDC