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Sed0006170 (gene) of Chayote v1 genome

Gene IDSed0006170
OrganismSechium edule (Chayote v1)
DescriptionNHL domain-containing protein
Genome locationLG08:37772623..37773324
RNA-Seq ExpressionSed0006170
SyntenySed0006170
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584232.1 hypothetical protein SDJN03_20164, partial [Cucurbita argyrosperma subsp. sororia]1.2e-6077.78Show/hide
Query:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA----SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR
        MGDRDG  KE+E      GADALLASRRY C CFP FG  RS S ELSWW+RAKA    +KFDG+DHWWSGGIRSLKKLREWSEIVAGP+WKTFIRRFNR
Subjt:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA----SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVP
        NRPAAVK GKFQYDPISYALNFDEG+N GDVDFEG+E++GG Q+F+ RFSAVP
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVP

XP_022923865.1 uncharacterized protein LOC111431456 [Cucurbita moschata]4.9e-6279.08Show/hide
Query:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA----SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR
        MGDRDG  KE+E      GADALLASRRY C CFP FG  RS S ELSWW+RAKA    +KFDG+DHWWSGGIRSLKKLREWSEIVAGP+WKTFIRRFNR
Subjt:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA----SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVP
        NRPAAVKLGKFQYDPISYALNFDEG+N GDVDFEG+E++GG QNF+ RFSAVP
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVP

XP_023000665.1 uncharacterized protein LOC111495035 [Cucurbita maxima]8.4e-6278.43Show/hide
Query:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA----SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR
        MGDRDG  KE+E      GADALLASRRY+C CFP FG  RS S ELSWW+RAKA    +KFDG+DHWWSGGIRSLKKLREWSEIVAGP+WKTFIRRFNR
Subjt:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA----SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVP
        NRPAAVKLGKFQYDPISYALNFDEG+N GDV+FEG+E++GG QNF+ RFSAVP
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVP

XP_023519821.1 uncharacterized protein LOC111783153 [Cucurbita pepo subsp. pepo]2.2e-6279.08Show/hide
Query:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA----SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR
        MGDRDG  KE+E      GADALLASRRY+C CFP FG  RS S ELSWW+RAKA    +KFDG+DHWWSGGIRSLKKLREWSEIVAGP+WKTFIRRFNR
Subjt:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA----SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVP
        NRPAAVKLGKFQYDPISYALNFDEG+N GDVDFEG+E++GG QNF+ RFSAVP
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVP

XP_038894780.1 uncharacterized protein LOC120083201 [Benincasa hispida]5.4e-6175.16Show/hide
Query:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDR----AKASKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR
        MGDRDGA KELE      GADALLAS+RY+C CFP FGPRRS S E+SWW+R    AK++KFDG+DHWW+GGIRSLKKLREWSEIVAGP+WKTFIRRFNR
Subjt:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDR----AKASKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGS-QNFAGRFSAVPLQV
        NRPA VKLGKFQYDPISYALNFD+G+N GDVDF+G+E++GG  QNF+ RF+AVP  V
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGS-QNFAGRFSAVPLQV

TrEMBL top hitse value%identityAlignment
A0A5A7ULQ3 Uncharacterized protein7.6e-6177.78Show/hide
Query:  MGDRDGASKELEP-TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDR----AKASKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNRNRP
        MGDRDGA KELE   GADALLAS+RY+C CFP FGP RS S ELSWW+R    AK++KFDG+DHWW+GGIRSLKKLREWSEIVAGP+WKTFIRRFNRNRP
Subjt:  MGDRDGASKELEP-TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDR----AKASKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNRNRP

Query:  AAVKLGKFQYDPISYALNFDEGNNGGDVDFEG-EEFNGGS--QNFAGRFSAVP
        A VKLGKFQYDPISYALNFDEG+N GDVDFEG  E+ GG   QNF+ RF+AVP
Subjt:  AAVKLGKFQYDPISYALNFDEGNNGGDVDFEG-EEFNGGS--QNFAGRFSAVP

A0A5D3BLD0 Uncharacterized protein6.5e-6077.12Show/hide
Query:  MGDRDGASKELEP-TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDR----AKASKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNRNRP
        MGDRDGA KELE   GADALLAS+RY+C CFP FGP RS S ELSWW+R    AK++KFDG+DHWW+G IRSLKKLREWSEIVAGP+WKTFIRRFNRNRP
Subjt:  MGDRDGASKELEP-TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDR----AKASKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNRNRP

Query:  AAVKLGKFQYDPISYALNFDEGNNGGDVDFEG-EEFNGGS--QNFAGRFSAVP
        A VKLGKFQYDPISYALNFDEG+N GDVDFEG  E+ GG   QNF+ RF+AVP
Subjt:  AAVKLGKFQYDPISYALNFDEGNNGGDVDFEG-EEFNGGS--QNFAGRFSAVP

A0A6J1ED51 uncharacterized protein LOC1114314562.4e-6279.08Show/hide
Query:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA----SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR
        MGDRDG  KE+E      GADALLASRRY C CFP FG  RS S ELSWW+RAKA    +KFDG+DHWWSGGIRSLKKLREWSEIVAGP+WKTFIRRFNR
Subjt:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA----SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVP
        NRPAAVKLGKFQYDPISYALNFDEG+N GDVDFEG+E++GG QNF+ RFSAVP
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVP

A0A6J1GSC5 uncharacterized protein LOC1114570522.9e-6074.84Show/hide
Query:  MGDRDGASKELEPT----GADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA-------SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRR
        MGDRDGA KE E T    GADA L S RY CLCFP FGPRRSVS E+SWW+RAKA       +  DG+DHWW+GG+RS+KKLREWSEIVAGP+WKTFIRR
Subjt:  MGDRDGASKELEPT----GADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA-------SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRR

Query:  FNRNRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVPLQV
        FNRNRPAAVKLGKFQYDPISYALNFDEGNN GDVDFE EE NGG +NF+ RF+AVP  V
Subjt:  FNRNRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVPLQV

A0A6J1KJ01 uncharacterized protein LOC1114950354.0e-6278.43Show/hide
Query:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA----SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR
        MGDRDG  KE+E      GADALLASRRY+C CFP FG  RS S ELSWW+RAKA    +KFDG+DHWWSGGIRSLKKLREWSEIVAGP+WKTFIRRFNR
Subjt:  MGDRDGASKELEP----TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKA----SKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVP
        NRPAAVKLGKFQYDPISYALNFDEG+N GDV+FEG+E++GG QNF+ RFSAVP
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)6.0e-1835.29Show/hide
Query:  LASRRYTCLCFPGFGPRR-SVSGELSWWDR-AKASKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNRNR----------------------P
        L ++R  C   P     + S  G   WW R     K + D+ WW   IR  +++REWSE+VAGP+WKT+IRRF R+                        
Subjt:  LASRRYTCLCFPGFGPRR-SVSGELSWWDR-AKASKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNRNR----------------------P

Query:  AAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVPLQV
         +   GKF+YD +SY+LNFD+GN  G  D   +EF    ++++ RF+A  L V
Subjt:  AAVKLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVPLQV

AT3G48020.1 unknown protein2.1e-1841.96Show/hide
Query:  SVSGELSWWDRAKASKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNRNRPAAV---KLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGS
        S + + SWW R   +    +  WW   +R+  K+REWSEIVAGP+WKTFIRRFNR+           KF+YDP+SY L+F++     D D + E   GG 
Subjt:  SVSGELSWWDRAKASKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNRNRPAAV---KLGKFQYDPISYALNFDEGNNGGDVDFEGEEFNGGS

Query:  QNFAGRFSAVPL
        ++F+ R+++VP+
Subjt:  QNFAGRFSAVPL

AT5G14890.1 NHL domain-containing protein3.0e-1739.72Show/hide
Query:  SRRYTCLCFPGFGPRRSVSGELS-WWDRAK-ASKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR------------NRPAAVKLGKFQYDP
        ++R  C   P  G  +      S WW R +   K + D+ WW  G     K+REWSEIVAGPKWKTFIRRF R            NRP  V    F+YD 
Subjt:  SRRYTCLCFPGFGPRRSVSGELS-WWDRAK-ASKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNR------------NRPAAVKLGKFQYDP

Query:  ISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVPLQV
         SY+LNFD+G   G  +   +EF    ++++ RF+A  L V
Subjt:  ISYALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVPLQV

AT5G25240.1 unknown protein1.8e-0937.1Show/hide
Query:  TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKASKFDGDDH-----WWSG----------GIRSLKKLREWSEIVAGPKWKTFIRRFNRNRPAAV
        T  + LL+        F G G  RS S   + W R       GDD       WSG          G   LK L+E SE +AGPKWK FIR F+  R    
Subjt:  TGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKASKFDGDDH-----WWSG----------GIRSLKKLREWSEIVAGPKWKTFIRRFNRNRPAAV

Query:  KLGKFQYDPISYALNFDEGNNGGD
        +   F YD  +Y+LNFD+G +G D
Subjt:  KLGKFQYDPISYALNFDEGNNGGD

AT5G62865.1 unknown protein1.3e-2045.86Show/hide
Query:  CLCFPGFGPRRSVS--GELSWW-----DRAKASKFDGDD-HWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNRNRPAAVKLG---KFQYDPISYALNFD
        C CFP F   RS +  G  SW      D +  S   GD+  WW   IR+  K+REWSEIVAGP+WKTFIRRFNR+           KFQYDP+SY+LNFD
Subjt:  CLCFPGFGPRRSVS--GELSWW-----DRAKASKFDGDD-HWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNRNRPAAVKLG---KFQYDPISYALNFD

Query:  EGNNGGDVDFEGEEF--NGGSQNFAGRFSAVPL
        +       D E +E+   GG ++F+ RF++VP+
Subjt:  EGNNGGDVDFEGEEF--NGGSQNFAGRFSAVPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGACCGTGACGGAGCTTCCAAGGAATTGGAACCCACCGGCGCCGATGCTCTTTTAGCCTCTAGACGATATACTTGTTTATGCTTCCCCGGCTTCGGACCCCGCCG
GTCGGTTTCCGGCGAACTCTCTTGGTGGGACCGGGCGAAAGCTTCGAAGTTCGACGGCGACGATCACTGGTGGTCCGGCGGAATCAGATCCCTCAAGAAGCTTCGTGAAT
GGTCCGAGATCGTCGCCGGTCCGAAGTGGAAAACCTTCATTCGCCGGTTCAATAGAAACCGGCCCGCCGCCGTGAAGCTTGGGAAATTCCAATACGATCCCATCAGTTAC
GCTTTGAATTTCGATGAAGGAAATAACGGCGGTGATGTGGATTTTGAAGGGGAAGAATTCAACGGTGGGTCTCAAAATTTCGCCGGCCGGTTTTCTGCCGTGCCTCTGCA
GGTTTAA
mRNA sequenceShow/hide mRNA sequence
GCCCCATTACATTACCGGTCGCCCACTGTTTCTGACATTCAACCATTTTGGCTCTATATAGTGAGCCCTAATCGGAATCCAAATCCCTAATCTCACTCTTCGCCGCCATG
GGAGACCGTGACGGAGCTTCCAAGGAATTGGAACCCACCGGCGCCGATGCTCTTTTAGCCTCTAGACGATATACTTGTTTATGCTTCCCCGGCTTCGGACCCCGCCGGTC
GGTTTCCGGCGAACTCTCTTGGTGGGACCGGGCGAAAGCTTCGAAGTTCGACGGCGACGATCACTGGTGGTCCGGCGGAATCAGATCCCTCAAGAAGCTTCGTGAATGGT
CCGAGATCGTCGCCGGTCCGAAGTGGAAAACCTTCATTCGCCGGTTCAATAGAAACCGGCCCGCCGCCGTGAAGCTTGGGAAATTCCAATACGATCCCATCAGTTACGCT
TTGAATTTCGATGAAGGAAATAACGGCGGTGATGTGGATTTTGAAGGGGAAGAATTCAACGGTGGGTCTCAAAATTTCGCCGGCCGGTTTTCTGCCGTGCCTCTGCAGGT
TTAATTCGTCGGCGGTTGTGGTTTTTTTTGTTTTCAATTTCTTTTTCCGGTGAAGTTGAACGGACGGTTTCTGTCCGTGGTGGGATTTTAACGTATGATTGATTATTCAA
CTGATGAGCTGGAAGTTGACTGTTTTTGGATCAATTAGGAGA
Protein sequenceShow/hide protein sequence
MGDRDGASKELEPTGADALLASRRYTCLCFPGFGPRRSVSGELSWWDRAKASKFDGDDHWWSGGIRSLKKLREWSEIVAGPKWKTFIRRFNRNRPAAVKLGKFQYDPISY
ALNFDEGNNGGDVDFEGEEFNGGSQNFAGRFSAVPLQV