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Sed0006175 (gene) of Chayote v1 genome

Gene IDSed0006175
OrganismSechium edule (Chayote v1)
DescriptionGlycine--tRNA ligase beta subunit
Genome locationLG05:4725505..4726267
RNA-Seq ExpressionSed0006175
SyntenySed0006175
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017064.1 hypothetical protein SDJN02_22176, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-1364.47Show/hide
Query:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLP----------ALADNSSSSAVIHSNRRGGAAA
        MMLVSV+AE+LEEYTV+L EVLRQL HSAPFPRR+RF ILH+LP          + + +SSSSA+IHSNR  GA A
Subjt:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLP----------ALADNSSSSAVIHSNRRGGAAA

XP_022159655.1 uncharacterized protein LOC111025999 [Momordica charantia]6.9e-1170.77Show/hide
Query:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLPALADNSSSSAVIHSNRRGGAA
        MMLVSV+AELLEEYTV+LAEVLRQL +SAPFPRR+RF ILH+LP+  +NS+SSA +  NR G +A
Subjt:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLPALADNSSSSAVIHSNRRGGAA

XP_022928978.1 uncharacterized protein LOC111435715 [Cucurbita moschata]8.7e-1467.12Show/hide
Query:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLP-------ALADNSSSSAVIHSNRRGGAAA
        MMLVSV+AE+LEEYTV+L EVLRQL HSAPFPRR+RF ILH+LP       + + +SSSSA+IHSNR  GA A
Subjt:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLP-------ALADNSSSSAVIHSNRRGGAAA

XP_022970120.1 uncharacterized protein LOC111469109 [Cucurbita maxima]2.3e-1474.63Show/hide
Query:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLP-ALADNSSSSAVIHSNRRGGAAA
        MMLVSV+AE+LEEYTV+L EVLRQL HSAPFPRR+RF ILH+LP A   +SSSSA+IHSNR  GA A
Subjt:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLP-ALADNSSSSAVIHSNRRGGAAA

XP_023520510.1 uncharacterized protein LOC111783933 [Cucurbita pepo subsp. pepo]2.5e-1369.57Show/hide
Query:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLPAL---ADNSSSSAVIHSNRRGGAAA
        MMLVSV+AE+LEEYTV+L EVLRQL HSAPFPRR+RF ILH+LP     + +SSSSA+I+SNR  GA A
Subjt:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLPAL---ADNSSSSAVIHSNRRGGAAA

TrEMBL top hitse value%identityAlignment
A0A0A0KM75 Uncharacterized protein1.5e-0868.52Show/hide
Query:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLPALADNSSSSA
        MMLVSV+AE+LEEYTVVL++VLRQL +SAPFP R+RF ILH+LP  AD  ++ A
Subjt:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLPALADNSSSSA

A0A1S3AUP0 uncharacterized protein LOC1034828834.1e-0979.55Show/hide
Query:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLP
        MMLVSV+AE+LEEYTVVL++VLRQL +SAPFPRR+RF ILH+LP
Subjt:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLP

A0A6J1DZC9 uncharacterized protein LOC1110259993.3e-1170.77Show/hide
Query:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLPALADNSSSSAVIHSNRRGGAA
        MMLVSV+AELLEEYTV+LAEVLRQL +SAPFPRR+RF ILH+LP+  +NS+SSA +  NR G +A
Subjt:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLPALADNSSSSAVIHSNRRGGAA

A0A6J1EQP1 uncharacterized protein LOC1114357154.2e-1467.12Show/hide
Query:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLP-------ALADNSSSSAVIHSNRRGGAAA
        MMLVSV+AE+LEEYTV+L EVLRQL HSAPFPRR+RF ILH+LP       + + +SSSSA+IHSNR  GA A
Subjt:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLP-------ALADNSSSSAVIHSNRRGGAAA

A0A6J1I1Z0 uncharacterized protein LOC1114691091.1e-1474.63Show/hide
Query:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLP-ALADNSSSSAVIHSNRRGGAAA
        MMLVSV+AE+LEEYTV+L EVLRQL HSAPFPRR+RF ILH+LP A   +SSSSA+IHSNR  GA A
Subjt:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLP-ALADNSSSSAVIHSNRRGGAAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G33055.1 unknown protein2.6e-0850Show/hide
Query:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLPALADNSSSSAVIHS
        M+LV+++AE+++EYTVVLA V+  L   APFPRR+R  IL+SLP  + N+S   ++ S
Subjt:  MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLPALADNSSSSAVIHS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCTCGTTTCGGTAATGGCGGAGCTTCTGGAGGAGTACACGGTGGTGCTCGCGGAGGTGCTCCGGCAGCTATTACATTCCGCGCCATTTCCTCGCCGATTACGATT
TTTTATCCTTCACAGTCTCCCGGCTTTGGCCGATAATTCCTCCTCCTCCGCCGTGATTCACTCAAATCGGCGAGGCGGCGCAGCCGCGTTATTGTAG
mRNA sequenceShow/hide mRNA sequence
TAAAGATCCATCACCGTAAAAAAAAAAATCCATCGAATCAAAATCACAACAATCTTGAAAAGGAAAATTGATTTTGGGCATTGAGTGAGATCGAGTACAGCGAATTAAAG
CCCTAATTTGACGGCGGTGATGATGCTCGTTTCGGTAATGGCGGAGCTTCTGGAGGAGTACACGGTGGTGCTCGCGGAGGTGCTCCGGCAGCTATTACATTCCGCGCCAT
TTCCTCGCCGATTACGATTTTTTATCCTTCACAGTCTCCCGGCTTTGGCCGATAATTCCTCCTCCTCCGCCGTGATTCACTCAAATCGGCGAGGCGGCGCAGCCGCGTTA
TTGTAGTCGCGATTTTGTTTGTTGTGATTTTCTCTTTATTCATCGTTTATTATTACTAAATCATTTTCTTCTTCTTATTCTGGTTTGTTTCTGGATTGTTTTTCTTGTTT
GAAATTATGGCAATTTTCTTCTTTTTAATCTTCCTTTTTTGTGTTTTATTTATTTTTGAAATTGATTAGTGACCCGTACATCCAATGGGTCATACCCATAATTATTTCAT
TATTTTTGTGGTAAATCAGTTTAATACCATCGTCACAGGTTTTAATTTTGCTTTTTATTTATTTTTTAGAAGCATGTAATTTTTTAATGGGTCAGTCACATAACGATTTC
ATTATTTAGTTGTAAACTAGTTCAATTCTATCTTGAGAATCGATATTTGTCTCATCCTCTCAATATTGTACTAAAAATAGTGACGGGTAGAGTTTGTTGTGTC
Protein sequenceShow/hide protein sequence
MMLVSVMAELLEEYTVVLAEVLRQLLHSAPFPRRLRFFILHSLPALADNSSSSAVIHSNRRGGAAALL