; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0006191 (gene) of Chayote v1 genome

Gene IDSed0006191
OrganismSechium edule (Chayote v1)
DescriptionCold regulated protein 27, putative isoform 2
Genome locationLG05:37622536..37627145
RNA-Seq ExpressionSed0006191
SyntenySed0006191
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0042752 - regulation of circadian rhythm (biological process)
InterPro domainsIPR044678 - Cold-regulated protein 27/28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031301.1 Cold regulated protein 27, putative isoform 2 [Cucumis melo var. makuwa]1.7e-7065.98Show/hide
Query:  HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQK
        H PS +S P        PP S+T  S        SSSITVD   RF +S   LQLDA QTHWTDEKHRSY+DSLEA+FVQ LHQ+ R HALSSKQK+R+K
Subjt:  HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQK

Query:  PNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSI
        P +   SSSELMV++DA   KANIGRNDPLLD TADSPAILEDL IN FPSAGKQC++ETPDLL ECGSCSDRR +R+ T  CGSAR+SQQ  P   NS 
Subjt:  PNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSI

Query:  TIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQ
        TIITEVSDQNFVDN P E SG MP AKR KKA+S    N Q
Subjt:  TIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQ

KAG7022450.1 hypothetical protein SDJN02_16181, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-7867.3Show/hide
Query:  MGHHL----HAPSSLSPPPPPTAVDRPPPSATDFS----------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFH
        MG HL    H PSS+SPP     VDR PPS +  S          SSS TVD F  FP S R LQLDAVQTHWTDEKHRSY+ SLEA+FVQ+LHQ  R  
Subjt:  MGHHL----HAPSSLSPPPPPTAVDRPPPSATDFS----------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFH

Query:  ALSSKQKIRQKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSS
        ALSSKQK+R +P++P +SSSELMV++DA   KANIGRNDPLL+  ADSPAIL+D+ INRFPSAGK CT ETPDLL E GS SD R LRNT     SARSS
Subjt:  ALSSKQKIRQKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSS

Query:  QQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLSSER
        QQIPP  R S TIITEVSDQNFVDN P E SG MP AKR KKA+SDSS NDQVVPYKR S ER
Subjt:  QQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLSSER

XP_008454952.1 PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo]1.4e-7466.67Show/hide
Query:  HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQK
        H PS +S P        PP S+T  S        SSSITVD   RF +S   LQLDA QTHWTDEKHRSY+DSLEA+FVQ LHQ+ R HALSSKQK+R+K
Subjt:  HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQK

Query:  PNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSI
        P +   SSSELMV++DA   KANIGRNDPLLD TADSPAILEDL IN FPSAGKQC++ETPDLL ECGSCSDRR +R+ T  CGSAR+SQQ  P   NS 
Subjt:  PNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSI

Query:  TIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLS
        TIITEVSDQNFVDN P E SG MP AKR KKA+S    N QVVP+KRLS
Subjt:  TIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLS

XP_023529516.1 uncharacterized protein LOC111792349 isoform X1 [Cucurbita pepo subsp. pepo]1.1e-7967.68Show/hide
Query:  MGHHL----HAPSSLSPPPPPTAVDRPPPSATDFS----------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFH
        MG HL    H PSS+SPP     VDR PPS +  S          SSS+TVD F  FP S R LQLDAVQTHWTDEKHRSY+ SLEA+FVQ+LHQ  R  
Subjt:  MGHHL----HAPSSLSPPPPPTAVDRPPPSATDFS----------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFH

Query:  ALSSKQKIRQKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSS
        ALSSKQK+R +P++P +SSSELMV++DA   KANIGRNDPLL+  AD PAIL+D+ INRFPSAGKQCT ETPDLL E GS SDRR LRNT     SARSS
Subjt:  ALSSKQKIRQKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSS

Query:  QQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLSSER
        QQ+PP  R S TIITEVSDQNFVDNHP E SG MP AKR KKA+SDSS NDQVVPYKR S ER
Subjt:  QQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLSSER

XP_038887003.1 cold-regulated protein 27 isoform X1 [Benincasa hispida]5.7e-7967.73Show/hide
Query:  HLHAPSSLSPPP-PPTAVDRPPPSATDFS-------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIR
        H H  SS+SPPP P       PPSA+D +       SSSIT+D    F  S   LQLDA QTHWTDEKHR Y+DSLEA+FVQ LHQ+ R HALS +QK+ 
Subjt:  HLHAPSSLSPPP-PPTAVDRPPPSATDFS-------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIR

Query:  QKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRN
         KP +P +SSSELM+++DA   KANIGRNDP LD TADSPAILEDL INRFPSAGKQCT E PD+L ECGSCSDRR LRNT+  CGSARSSQQIPP  R+
Subjt:  QKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRN

Query:  SITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLS
        S  IITEVSDQNFVD+HPRE SG +P+AKR KK +SDSS NDQVVPYKR S
Subjt:  SITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLS

TrEMBL top hitse value%identityAlignment
A0A0A0K7Z2 Uncharacterized protein3.0e-7064.26Show/hide
Query:  HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQK
        H PS LSPP        P  SAT  S        SSSIT+D    F +S    QLDA QTHWTDEKHR Y+DSLEA+FVQ LHQ+   HALS KQK+R+K
Subjt:  HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQK

Query:  PNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSI
        P  P +SSSELMV++DA   KANIGRNDPLLD TADSPAILEDL IN FPSAGKQC++ETPDLL EC SCSDRR +R  T  C SAR+SQ   P   NS 
Subjt:  PNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSI

Query:  TIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLS
        TIITEVSDQNFVDN P E S  MP+AKR KKA+SD S + QVVP+KRLS
Subjt:  TIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLS

A0A1S3BZU8 uncharacterized protein LOC103495241 isoform X17.0e-7566.67Show/hide
Query:  HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQK
        H PS +S P        PP S+T  S        SSSITVD   RF +S   LQLDA QTHWTDEKHRSY+DSLEA+FVQ LHQ+ R HALSSKQK+R+K
Subjt:  HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQK

Query:  PNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSI
        P +   SSSELMV++DA   KANIGRNDPLLD TADSPAILEDL IN FPSAGKQC++ETPDLL ECGSCSDRR +R+ T  CGSAR+SQQ  P   NS 
Subjt:  PNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSI

Query:  TIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLS
        TIITEVSDQNFVDN P E SG MP AKR KKA+S    N QVVP+KRLS
Subjt:  TIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLS

A0A5D3C4A3 Cold regulated protein 27, putative isoform 28.0e-7165.98Show/hide
Query:  HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQK
        H PS +S P        PP S+T  S        SSSITVD   RF +S   LQLDA QTHWTDEKHRSY+DSLEA+FVQ LHQ+ R HALSSKQK+R+K
Subjt:  HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQK

Query:  PNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSI
        P +   SSSELMV++DA   KANIGRNDPLLD TADSPAILEDL IN FPSAGKQC++ETPDLL ECGSCSDRR +R+ T  CGSAR+SQQ  P   NS 
Subjt:  PNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSI

Query:  TIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQ
        TIITEVSDQNFVDN P E SG MP AKR KKA+S    N Q
Subjt:  TIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQ

A0A6J1GJA3 uncharacterized protein LOC111454842 isoform X24.4e-6961.48Show/hide
Query:  HAPSSLSPPPPPTAVDRPPP---SATDFS-------SSSITVDAF---ARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQ
        H PSS+SPP      DR  P   SA+D +       SSS TVDA         S    QLDAVQTHWT+EKHR ++DSLEA+FVQ LH+     ALSSKQ
Subjt:  HAPSSLSPPPPPTAVDRPPP---SATDFS-------SSSITVDAF---ARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQ

Query:  KIRQKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPR
        K+R+KP +P +SSSE MV++DA   KAN+GR DPLLD TADSPAILED+ IN FPSAG QCT+ET D+L ECGSCSDR  +RN T    SARSSQQIPP 
Subjt:  KIRQKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPR

Query:  SRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLSSER
         R+S TI+TEVSDQNFVD HP E S   P+ KR KKA+SDSS N++V PYKRLSSER
Subjt:  SRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLSSER

A0A6J1I9R8 uncharacterized protein LOC111470946 isoform X29.2e-6760.7Show/hide
Query:  HAPSSLSPPPPPTAVDRPPP---SATDFS-------SSSITVDAF---ARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQ
        H PSS+SPP      DR      SA+D +       SSS TVDA         S    QLDAVQTHWTDEKHR ++D+LEA+FVQ LH+     A SSKQ
Subjt:  HAPSSLSPPPPPTAVDRPPP---SATDFS-------SSSITVDAF---ARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQ

Query:  KIRQKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPR
        K+R+KP +P +SSSE MV++DA   KANIGR DPLL  TADSPAILED+ IN FPSAG Q T ET D+L ECGSCSDR  +RN T  C SARSSQQIPP 
Subjt:  KIRQKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPR

Query:  SRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLSSER
         R+S TI+ EVSDQNFVD HP E SG  P+ KR KKA+SDS  ND+V PYKRLSSER
Subjt:  SRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLSSER

SwissProt top hitse value%identityAlignment
Q8L8T7 Cold-regulated protein 276.0e-0728.5Show/hide
Query:  VQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNI---PKMSSSELMVVEDALPPKANIGRNDPLLDST--ADSPAILEDLRINRFPSA
        ++T WT+EKH  Y+ S+EA+FV QL+ ++   AL   + + +        K S  +  V+ D    K N+ + +  ++     +S   L    I  +   
Subjt:  VQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNI---PKMSSSELMVVEDALPPKANIGRNDPLLDST--ADSPAILEDLRINRFPSA

Query:  GKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSITII---TEVSDQNFVDNHPREGSGCMPMAKRFKKA-TSDSSVNDQVVPYKRL
         K     T +   +  S S+ ++        GSA S +Q+   SR+   I     EVSDQNFV+   +  +G    +K+ K    S+SS  DQVVP  +L
Subjt:  GKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSITII---TEVSDQNFVDNHPREGSGCMPMAKRFKKA-TSDSSVNDQVVPYKRL

Arabidopsis top hitse value%identityAlignment
AT4G33980.1 BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2)1.3e-0425.13Show/hide
Query:  THWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTME
        T WT+EKH SY+D LE++FV+QL+ ++         + R   +    S+ +  V+++    K N G+    L+++++       LR N+  ++    TM 
Subjt:  THWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTME

Query:  TP---DLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSV-NDQVVPYK
        T    D+L     C D                            T  +E S QNF +    E  G +   +  +    DSS+  DQVVP +
Subjt:  TP---DLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSV-NDQVVPYK

AT4G33980.2 FUNCTIONS IN: molecular_function unknown1.3e-0425.13Show/hide
Query:  THWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTME
        T WT+EKH SY+D LE++FV+QL+ ++         + R   +    S+ +  V+++    K N G+    L+++++       LR N+  ++    TM 
Subjt:  THWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTME

Query:  TP---DLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSV-NDQVVPYK
        T    D+L     C D                            T  +E S QNF +    E  G +   +  +    DSS+  DQVVP +
Subjt:  TP---DLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSV-NDQVVPYK

AT5G42900.1 cold regulated gene 274.3e-0828.5Show/hide
Query:  VQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNI---PKMSSSELMVVEDALPPKANIGRNDPLLDST--ADSPAILEDLRINRFPSA
        ++T WT+EKH  Y+ S+EA+FV QL+ ++   AL   + + +        K S  +  V+ D    K N+ + +  ++     +S   L    I  +   
Subjt:  VQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNI---PKMSSSELMVVEDALPPKANIGRNDPLLDST--ADSPAILEDLRINRFPSA

Query:  GKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSITII---TEVSDQNFVDNHPREGSGCMPMAKRFKKA-TSDSSVNDQVVPYKRL
         K     T +   +  S S+ ++        GSA S +Q+   SR+   I     EVSDQNFV+   +  +G    +K+ K    S+SS  DQVVP  +L
Subjt:  GKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSITII---TEVSDQNFVDNHPREGSGCMPMAKRFKKA-TSDSSVNDQVVPYKRL

AT5G42900.2 cold regulated gene 274.3e-0828.5Show/hide
Query:  VQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNI---PKMSSSELMVVEDALPPKANIGRNDPLLDST--ADSPAILEDLRINRFPSA
        ++T WT+EKH  Y+ S+EA+FV QL+ ++   AL   + + +        K S  +  V+ D    K N+ + +  ++     +S   L    I  +   
Subjt:  VQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNI---PKMSSSELMVVEDALPPKANIGRNDPLLDST--ADSPAILEDLRINRFPSA

Query:  GKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSITII---TEVSDQNFVDNHPREGSGCMPMAKRFKKA-TSDSSVNDQVVPYKRL
         K     T +   +  S S+ ++        GSA S +Q+   SR+   I     EVSDQNFV+   +  +G    +K+ K    S+SS  DQVVP  +L
Subjt:  GKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSITII---TEVSDQNFVDNHPREGSGCMPMAKRFKKA-TSDSSVNDQVVPYKRL

AT5G42900.3 cold regulated gene 276.6e-0928.64Show/hide
Query:  VQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNI---PKMSSSELMVVEDALPPKANIGRNDPLLDST--ADSPAILEDLRINRFPSA
        ++T WT+EKH  Y+ S+EA+FV QL+ ++   AL   + + +        K S  +  V+ D    K N+ + +  ++     +S   L    I  +   
Subjt:  VQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNI---PKMSSSELMVVEDALPPKANIGRNDPLLDST--ADSPAILEDLRINRFPSA

Query:  GKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSR--NSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKA-TSDSSVNDQVVPYKRL
         K     T +   +  S S+ ++        GSA S +Q+   SR  + I++  EVSDQNFV+   +  +G    +K+ K    S+SS  DQVVP  +L
Subjt:  GKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSR--NSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKA-TSDSSVNDQVVPYKRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACACCATCTCCACGCGCCGTCGTCTCTCTCTCCGCCGCCGCCGCCGACGGCTGTAGATCGGCCACCGCCCTCCGCTACCGACTTCAGCTCTTCTTCCATCACCGT
TGACGCTTTCGCCCGTTTCCCTAATTCTCTTCGTCGCCTGCAACTCGATGCGGTGCAAACACATTGGACAGATGAGAAACACAGATCATATGTTGATTCCTTAGAAGCAA
CTTTTGTCCAACAGTTGCATCAAAATATACGCTTCCATGCCTTGTCTTCCAAACAGAAAATTCGTCAGAAGCCAAACATCCCTAAAATGTCATCTTCAGAGTTAATGGTT
GTTGAAGATGCCTTGCCGCCGAAGGCTAACATTGGGAGGAATGATCCTTTGTTGGATAGCACTGCCGATTCGCCTGCTATTTTGGAGGATCTACGAATAAATCGTTTTCC
TTCTGCAGGAAAACAGTGCACTATGGAAACTCCTGATCTCCTTGGTGAATGTGGAAGTTGTAGTGATAGGAGACGCTTAAGAAACACAACAACGCCCTGTGGATCAGCCA
GAAGTTCACAGCAGATCCCTCCACGCTCACGTAATTCTATTACAATCATTACAGAAGTTTCCGATCAGAACTTTGTGGATAATCATCCACGAGAGGGGTCTGGTTGCATG
CCTATGGCGAAAAGATTTAAGAAAGCTACTTCTGATTCTTCGGTTAACGATCAGGTTGTACCGTATAAAAGATTATCATCAGAAAGATAA
mRNA sequenceShow/hide mRNA sequence
GAGAGGGTTTCGGACCTAAATTTCTGCTTTCATTGTTCATTTCTATATTTTCCTTTCTTTTTTTCTCAACATCGATTTCGATCCAATGGGACACCATCTCCACGCGCCGT
CGTCTCTCTCTCCGCCGCCGCCGCCGACGGCTGTAGATCGGCCACCGCCCTCCGCTACCGACTTCAGCTCTTCTTCCATCACCGTTGACGCTTTCGCCCGTTTCCCTAAT
TCTCTTCGTCGCCTGCAACTCGATGCGGTGCAAACACATTGGACAGATGAGAAACACAGATCATATGTTGATTCCTTAGAAGCAACTTTTGTCCAACAGTTGCATCAAAA
TATACGCTTCCATGCCTTGTCTTCCAAACAGAAAATTCGTCAGAAGCCAAACATCCCTAAAATGTCATCTTCAGAGTTAATGGTTGTTGAAGATGCCTTGCCGCCGAAGG
CTAACATTGGGAGGAATGATCCTTTGTTGGATAGCACTGCCGATTCGCCTGCTATTTTGGAGGATCTACGAATAAATCGTTTTCCTTCTGCAGGAAAACAGTGCACTATG
GAAACTCCTGATCTCCTTGGTGAATGTGGAAGTTGTAGTGATAGGAGACGCTTAAGAAACACAACAACGCCCTGTGGATCAGCCAGAAGTTCACAGCAGATCCCTCCACG
CTCACGTAATTCTATTACAATCATTACAGAAGTTTCCGATCAGAACTTTGTGGATAATCATCCACGAGAGGGGTCTGGTTGCATGCCTATGGCGAAAAGATTTAAGAAAG
CTACTTCTGATTCTTCGGTTAACGATCAGGTTGTACCGTATAAAAGATTATCATCAGAAAGATAAAAGCCAGACGCCATATCCATATTGTCTGCAGAATACCCTCAAAAC
TTTATGCTTCCAAATTCAGATTTGTGTTACTATGCAAGAGGATGGAGAATAAAATTGGCTGTTCAAGCTCATTAACCAAATGCAACACGGTTTTGTTTTTCATTCAAAAG
AGCATTGTAAAGAAACTCAATAACGGGAGGTGGCGGCAATAATTCCTGACCAGAAGATCTACAGCCGGAAGAGAAAATATGTTTGTATATGGTACAAAACTAAACTTTTT
CCTAGTTCAAATATTGAGTGAAATTAAGTTAACCCTTTCTTTTCTACTGTTTTCCTTTTACTTGAGAGGTTGAAAAAAATGGAAATTTTAAATAGATTTAGGGTATGAAT
ATACAAGTTATAAAGAAGCCACACACACCCTGATGGTGAGATAGGTACACTTTTTTTAGTTTGTTTGCAATACTCTCATTTTGAAGGTCTGTTAGAAATCTCAAGTGTAA
ATTATTGCATAAAACAAAGTGCCATGCTTGTGGGTGGCACTGAAAATAGTTTGAACAAACTTATTGATTTCCTTAGGGGGAAAGTCATCATATTGTATCCTGGTATCTTA
CTTCCATTATTTGATTTGATTTTCTTTAGGGGTAAAGTTTTATTATACTGTGTGCTGGTATTTTACCCCATTACTTGATATATTCGACTTAGCTTCAGTGTTTTTC
Protein sequenceShow/hide protein sequence
MGHHLHAPSSLSPPPPPTAVDRPPPSATDFSSSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMV
VEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCM
PMAKRFKKATSDSSVNDQVVPYKRLSSER