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Sed0006276 (gene) of Chayote v1 genome

Gene IDSed0006276
OrganismSechium edule (Chayote v1)
DescriptionNuclear transcription factor Y subunit B
Genome locationLG04:47580651..47581061
RNA-Seq ExpressionSed0006276
SyntenySed0006276
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050890.1 nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa]3.2e-3662.07Show/hide
Query:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER
        M + NNG+E L+LPIAN+ RIMKKI+P+  KISKEAK+TM+ECA EFISFVTSEAAQ+CH ENRRTL GDDICWAF + GLD YA  F  YLLKYREVER
Subjt:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER

Query:  IK-PQY-C--------QSDKPPKQEAHEHERDAFCFGEMGETSQP
        IK  +Y C        Q D   +QE +    D    GE+GETS P
Subjt:  IK-PQY-C--------QSDKPPKQEAHEHERDAFCFGEMGETSQP

KAG6590402.1 Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3966.18Show/hide
Query:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER
        MG+ NNG +ELQLPIAN+GR+MKKI+P+ AKISKEAK TM+ECATEFISFVTSEAA+KCH +NRRTL GDDICWAFG+ GLD YA A   YLLKYR+VER
Subjt:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER

Query:  IKPQYCQSDKPPKQEAHEHERD---AFCFGEMGETS
        I  Q+ +++  P+Q+ H+ E++    F  GE+GETS
Subjt:  IKPQYCQSDKPPKQEAHEHERD---AFCFGEMGETS

XP_022961414.1 nuclear transcription factor Y subunit B-4-like [Cucurbita moschata]1.8e-3967.67Show/hide
Query:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER
        MG+ NNG +ELQLPIAN+GR+MKKI+P+ AKISKEAK TM+ECATEFISFVTSEAA+KCH +NRRTL GDDICWAFG+ GLD YA A   YLLKYR+VER
Subjt:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER

Query:  IKPQYCQSDKPPKQEAHEHERDAFCFGEMGETS
        I  Q+ +++  P+Q+ H+ E + F  GE+GETS
Subjt:  IKPQYCQSDKPPKQEAHEHERDAFCFGEMGETS

XP_022968852.1 nuclear transcription factor Y subunit B-4-like [Cucurbita maxima]2.9e-3760Show/hide
Query:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER
        MG+ NNG +ELQLPIAN+GR+MKKI+P+ AKISKEAK TM+ECATEFISFVTSEAA+KCH +NRRTL GDDICWAFG+ GLD YA A   YLLKYR++ER
Subjt:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER

Query:  IKPQY------------CQSDKPPKQEAHEHERDAFCFGEMGETS
        I  Q+             + ++  +QE  + +   F  GE+GETS
Subjt:  IKPQY------------CQSDKPPKQEAHEHERDAFCFGEMGETS

XP_023546470.1 nuclear transcription factor Y subunit B-4-like [Cucurbita pepo subsp. pepo]1.7e-3762.41Show/hide
Query:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER
        MG+ NNG +ELQLPIAN+GR+MKKI+P+ AKISKEAK TM+ECATEFISFVTSEAA+KCH +NRRTL GDDICWAFG+ GLD YA A   YLLKYR+VER
Subjt:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER

Query:  IKPQYCQSDKPPKQEAHEHERDAFCFGEM------GETSQP
        I  Q+ +++  P+Q+ H+ +++     E       GETS+P
Subjt:  IKPQYCQSDKPPKQEAHEHERDAFCFGEM------GETSQP

TrEMBL top hitse value%identityAlignment
A0A1S3BRX1 nuclear transcription factor Y subunit B-41.0e-3561.38Show/hide
Query:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER
        M + NNG+E L+LPIAN+ RIMKKI+P+  KISKEAK+TM+ECA EFISFVTSEAAQ+CH ENRRTL GDDICWAF + GLD YA  F  YL KYREVER
Subjt:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER

Query:  IK-PQY-C--------QSDKPPKQEAHEHERDAFCFGEMGETSQP
        IK  +Y C        Q D   +QE +    D    GE+GETS P
Subjt:  IK-PQY-C--------QSDKPPKQEAHEHERDAFCFGEMGETSQP

A0A5A7U6S7 Nuclear transcription factor Y subunit B-41.6e-3662.07Show/hide
Query:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER
        M + NNG+E L+LPIAN+ RIMKKI+P+  KISKEAK+TM+ECA EFISFVTSEAAQ+CH ENRRTL GDDICWAF + GLD YA  F  YLLKYREVER
Subjt:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER

Query:  IK-PQY-C--------QSDKPPKQEAHEHERDAFCFGEMGETSQP
        IK  +Y C        Q D   +QE +    D    GE+GETS P
Subjt:  IK-PQY-C--------QSDKPPKQEAHEHERDAFCFGEMGETSQP

A0A5D3CG76 Nuclear transcription factor Y subunit B-41.0e-3561.38Show/hide
Query:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER
        M + NNG+E L+LPIAN+ RIMKKI+P+  KISKEAK+TM+ECA EFISFVTSEAAQ+CH ENRRTL GDDICWAF + GLD YA  F  YL KYREVER
Subjt:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER

Query:  IK-PQY-C--------QSDKPPKQEAHEHERDAFCFGEMGETSQP
        IK  +Y C        Q D   +QE +    D    GE+GETS P
Subjt:  IK-PQY-C--------QSDKPPKQEAHEHERDAFCFGEMGETSQP

A0A6J1HDY6 nuclear transcription factor Y subunit B-4-like8.9e-4067.67Show/hide
Query:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER
        MG+ NNG +ELQLPIAN+GR+MKKI+P+ AKISKEAK TM+ECATEFISFVTSEAA+KCH +NRRTL GDDICWAFG+ GLD YA A   YLLKYR+VER
Subjt:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER

Query:  IKPQYCQSDKPPKQEAHEHERDAFCFGEMGETS
        I  Q+ +++  P+Q+ H+ E + F  GE+GETS
Subjt:  IKPQYCQSDKPPKQEAHEHERDAFCFGEMGETS

A0A6J1HUN8 nuclear transcription factor Y subunit B-4-like1.4e-3760Show/hide
Query:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER
        MG+ NNG +ELQLPIAN+GR+MKKI+P+ AKISKEAK TM+ECATEFISFVTSEAA+KCH +NRRTL GDDICWAFG+ GLD YA A   YLLKYR++ER
Subjt:  MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVER

Query:  IKPQY------------CQSDKPPKQEAHEHERDAFCFGEMGETS
        I  Q+             + ++  +QE  + +   F  GE+GETS
Subjt:  IKPQY------------CQSDKPPKQEAHEHERDAFCFGEMGETS

SwissProt top hitse value%identityAlignment
O04027 Nuclear transcription factor Y subunit B-44.0e-2956.14Show/hide
Query:  EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQYCQ
        +E+  LPIAN+GR+MK+I+P  AKISKEAKQT++ECATEFISFVT EA++KCH ENR+T+ GDDI WA   LGLD YA A   +L KYRE ER + ++ +
Subjt:  EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQYCQ

Query:  SDKPPKQEAHEHER
               E   + R
Subjt:  SDKPPKQEAHEHER

O23310 Nuclear transcription factor Y subunit B-31.3e-2453.06Show/hide
Query:  GDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVE
        G+ +  E++  LPIAN+ RIMKK +P  AKISK+AK+T++EC +EFISF+T EA+ KC  E R+T+ GDD+ WA   LG + Y     +YL KYREVE
Subjt:  GDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVE

O82248 Nuclear transcription factor Y subunit B-51.7e-2759.18Show/hide
Query:  EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQY
        E++  LPIAN+GRIMK I+P  AK+SKEAK+TM+EC +EFISFVT EA+ KCH E R+T+ GDDICWA   LG D YA     YL +YR +E  KP +
Subjt:  EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQY

Q60EQ4 Nuclear transcription factor Y subunit B-31.1e-2354.35Show/hide
Query:  EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVE
        E++  LPIANI RIMKK +P   KI+K+AK+T++EC +EFISF+TSEA+ KC  E R+T+ GDD+ WA   LG + Y     +YL KYRE+E
Subjt:  EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVE

Q9SIT9 Nuclear transcription factor Y subunit B-71.6e-2544.27Show/hide
Query:  NNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYR--EVERIK
        NN E++  LPIAN+GRIMKK++P   KISK+AK+T++EC +EFISFVT EA+ KC  E R+T+ GDDI WA   LG + Y     +YL KYR  E E++ 
Subjt:  NNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYR--EVERIK

Query:  PQYCQSDKPPKQEAHEHERDAFCFGEMGETS
            Q  +  +Q+  +     + F E  + +
Subjt:  PQYCQSDKPPKQEAHEHERDAFCFGEMGETS

Arabidopsis top hitse value%identityAlignment
AT1G09030.1 nuclear factor Y, subunit B42.8e-3056.14Show/hide
Query:  EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQYCQ
        +E+  LPIAN+GR+MK+I+P  AKISKEAKQT++ECATEFISFVT EA++KCH ENR+T+ GDDI WA   LGLD YA A   +L KYRE ER + ++ +
Subjt:  EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQYCQ

Query:  SDKPPKQEAHEHER
               E   + R
Subjt:  SDKPPKQEAHEHER

AT2G13570.1 nuclear factor Y, subunit B71.1e-2644.27Show/hide
Query:  NNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYR--EVERIK
        NN E++  LPIAN+GRIMKK++P   KISK+AK+T++EC +EFISFVT EA+ KC  E R+T+ GDDI WA   LG + Y     +YL KYR  E E++ 
Subjt:  NNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYR--EVERIK

Query:  PQYCQSDKPPKQEAHEHERDAFCFGEMGETS
            Q  +  +Q+  +     + F E  + +
Subjt:  PQYCQSDKPPKQEAHEHERDAFCFGEMGETS

AT2G47810.1 nuclear factor Y, subunit B51.2e-2859.18Show/hide
Query:  EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQY
        E++  LPIAN+GRIMK I+P  AK+SKEAK+TM+EC +EFISFVT EA+ KCH E R+T+ GDDICWA   LG D YA     YL +YR +E  KP +
Subjt:  EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQY

AT3G53340.1 nuclear factor Y, subunit B108.0e-2553.12Show/hide
Query:  INNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVE
        +N  E++  LPIANI RIMK+ +P   KI+K+AK+TM+EC +EFISFVTSEA+ KC  E R+T+ GDD+ WA   LG + Y     +YL++YRE+E
Subjt:  INNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVE

AT4G14540.1 nuclear factor Y, subunit B39.5e-2653.06Show/hide
Query:  GDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVE
        G+ +  E++  LPIAN+ RIMKK +P  AKISK+AK+T++EC +EFISF+T EA+ KC  E R+T+ GDD+ WA   LG + Y     +YL KYREVE
Subjt:  GDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGACATTAATAATGGGGAGGAGGAGCTTCAACTACCAATAGCAAACATTGGCAGAATAATGAAGAAGATAGTTCCAAGAACAGCCAAAATTTCGAAAGAAGCCAA
GCAAACAATGAAGGAATGCGCCACAGAGTTCATCAGCTTCGTAACAAGTGAAGCAGCTCAAAAATGTCACAACGAGAATCGAAGAACCCTCATTGGAGACGATATTTGTT
GGGCTTTTGGTGCACTTGGCTTAGACTACTATGCTCACGCTTTTACTATGTACTTGCTCAAGTATAGAGAAGTTGAGAGAATCAAGCCTCAATACTGCCAAAGCGATAAG
CCTCCAAAACAAGAAGCACATGAACATGAACGCGATGCATTTTGTTTTGGTGAGATGGGTGAAACCTCTCAACCAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGACATTAATAATGGGGAGGAGGAGCTTCAACTACCAATAGCAAACATTGGCAGAATAATGAAGAAGATAGTTCCAAGAACAGCCAAAATTTCGAAAGAAGCCAA
GCAAACAATGAAGGAATGCGCCACAGAGTTCATCAGCTTCGTAACAAGTGAAGCAGCTCAAAAATGTCACAACGAGAATCGAAGAACCCTCATTGGAGACGATATTTGTT
GGGCTTTTGGTGCACTTGGCTTAGACTACTATGCTCACGCTTTTACTATGTACTTGCTCAAGTATAGAGAAGTTGAGAGAATCAAGCCTCAATACTGCCAAAGCGATAAG
CCTCCAAAACAAGAAGCACATGAACATGAACGCGATGCATTTTGTTTTGGTGAGATGGGTGAAACCTCTCAACCAATTTAG
Protein sequenceShow/hide protein sequence
MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQYCQSDK
PPKQEAHEHERDAFCFGEMGETSQPI