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Sed0006323 (gene) of Chayote v1 genome

Gene IDSed0006323
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG04:42018326..42018895
RNA-Seq ExpressionSed0006323
SyntenySed0006323
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591970.1 hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sororia]6.5e-3548.86Show/hide
Query:  MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSSKMLKGSIPKYVSVGPTSGDC---CNYDHCGENVCPPSYSC
        MA+T+ SFL GLL FLCLSLSSANRVLK ++AEKE ++N+ SS  ++QL++F++A+L S  + +G++PK  SVG   GDC   C     G    PP+Y  
Subjt:  MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSSKMLKGSIPKYVSVGPTSGDC---CNYDHCGENVCPPSYSC

Query:  GG-----NCG----------CPSYHNCPWQGCQGYQGCQGCQ--------GCQACQP--PPCDYKVG-VESSKVK-ESIQIAEPDLDPPSSFHQAQPGNH
        GG     N G          C +Y  CPWQGC G+QGCQGCQ        GCQ CQ   PPC ++VG V  SK++ ESI + E + +PP       P NH
Subjt:  GG-----NCG----------CPSYHNCPWQGCQGYQGCQGCQ--------GCQACQP--PPCDYKVG-VESSKVK-ESIQIAEPDLDPPSSFHQAQPGNH

Query:  NLKSSGGANQETKSNGGLV
        ++KSSGGANQ+ KSNGGLV
Subjt:  NLKSSGGANQETKSNGGLV

KAG6607873.1 hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sororia]4.8e-3048.95Show/hide
Query:  MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSSKMLKGSIPKYVSVGPTSGDCCNY-DHCGENVCPPSYSCGG
        MA+T+ S L  LL+ LCLS SSANRVLK +++E ESI+NS S G   +L NF HA+LN+  + +GSIPK+ S      DCCN+ +H G  VCPP+++CG 
Subjt:  MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSSKMLKGSIPKYVSVGPTSGDCCNY-DHCGENVCPPSYSCGG

Query:  NCGCPSYHNCPWQGCQGYQGCQGCQGCQACQPPPCDYKVGVESSKVKESIQIAEPDLDPPSSFHQAQPGNHNLKSSGGANQETKSNGGLV
        N GC  Y++C    CQ ++            PPPC   VG   S V+ESIQ +E DLD   +    +P NHN+K SGGANQ  KSNGGLV
Subjt:  NCGCPSYHNCPWQGCQGYQGCQGCQGCQACQPPPCDYKVGVESSKVKESIQIAEPDLDPPSSFHQAQPGNHNLKSSGGANQETKSNGGLV

KGN55137.1 hypothetical protein Csa_012773 [Cucumis sativus]1.6e-2540.44Show/hide
Query:  MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSSKMLKGSIPKYVSVGPTSGDCCNY-DHCGENVCPPSYSCGG
        MA+TRTS L GLL FLCLSL SANR+LK ++AE + I +   SG  +  +N +H +L S  +   S+ K  S+ P +GDCC+Y  +CG    PP+  CGG
Subjt:  MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSSKMLKGSIPKYVSVGPTSGDCCNY-DHCGENVCPPSYSCGG

Query:  NCG------------------------------CPSYHNCPWQGCQGYQGCQGCQGCQACQPPPCDYKVGVESSKV-KESIQIAEP----DLDPPSSFHQ
         CG                              C +  +C WQGC G Q CQGCQGCQ+     C  +  ++ SKV ++S+Q  EP     + PP     
Subjt:  NCG------------------------------CPSYHNCPWQGCQGYQGCQGCQGCQACQPPPCDYKVGVESSKV-KESIQIAEP----DLDPPSSFHQ

Query:  AQPGNHNLKSSGGANQETKSNGGLV
        A+P ++++KSSGG+NQ+ KSNGGLV
Subjt:  AQPGNHNLKSSGGANQETKSNGGLV

XP_023535133.1 mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo]1.5e-3447.79Show/hide
Query:  MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSSKMLKGSIPKYVSVGPTSGDC---CNYDHCGENVCPPSYSC
        MA+T++SFL GLL FLCLSLSSANRVLK ++AEKE +SN+ SS  ++QL++F++A+L S  + +G++PK  SVG   GDC   C     G    PP+Y  
Subjt:  MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSSKMLKGSIPKYVSVGPTSGDC---CNYDHCGENVCPPSYSC

Query:  GG-----NCG----------CPSYHNCPWQGCQGYQGCQGCQ---------------GCQACQP--PPCDYKVG-VESSKVK-ESIQIAEPDLDPPSSFH
        GG     N G          C +Y  CPWQGC G+QGCQGCQ               GCQ CQ   PPC ++VG V  SK++ ESI + E + +PP    
Subjt:  GG-----NCG----------CPSYHNCPWQGCQGYQGCQGCQ---------------GCQACQP--PPCDYKVG-VESSKVK-ESIQIAEPDLDPPSSFH

Query:  QAQPGNHNLKSSGGANQETKSNGGLV
           P NH++KSSGGANQ+ KSNGGLV
Subjt:  QAQPGNHNLKSSGGANQETKSNGGLV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F6 Uncharacterized protein7.8e-2640.44Show/hide
Query:  MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSSKMLKGSIPKYVSVGPTSGDCCNY-DHCGENVCPPSYSCGG
        MA+TRTS L GLL FLCLSL SANR+LK ++AE + I +   SG  +  +N +H +L S  +   S+ K  S+ P +GDCC+Y  +CG    PP+  CGG
Subjt:  MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSSKMLKGSIPKYVSVGPTSGDCCNY-DHCGENVCPPSYSCGG

Query:  NCG------------------------------CPSYHNCPWQGCQGYQGCQGCQGCQACQPPPCDYKVGVESSKV-KESIQIAEP----DLDPPSSFHQ
         CG                              C +  +C WQGC G Q CQGCQGCQ+     C  +  ++ SKV ++S+Q  EP     + PP     
Subjt:  NCG------------------------------CPSYHNCPWQGCQGYQGCQGCQGCQACQPPPCDYKVGVESSKV-KESIQIAEP----DLDPPSSFHQ

Query:  AQPGNHNLKSSGGANQETKSNGGLV
        A+P ++++KSSGG+NQ+ KSNGGLV
Subjt:  AQPGNHNLKSSGGANQETKSNGGLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTAACAAGAACCAGTTTCTTGTTTGGTCTCTTGGTGTTTCTCTGCTTAAGTCTCAGCTCTGCAAATCGAGTTCTCAAAGTGAGCAATGCTGAAAAGGAATCGAT
AAGTAACAGTGCATCTTCTGGGCACAATGATCAACTTGAAAATTTCAGCCATGCTGACCTAAACAGTAGCAAAATGCTAAAAGGTAGCATACCAAAGTATGTTTCGGTTG
GTCCAACGAGTGGCGACTGCTGCAACTATGACCATTGTGGTGAAAATGTGTGTCCTCCCAGCTACAGTTGTGGTGGAAACTGTGGTTGTCCATCCTATCACAATTGTCCA
TGGCAGGGATGCCAAGGATATCAAGGGTGCCAGGGATGCCAAGGATGCCAGGCGTGCCAACCTCCGCCCTGTGACTATAAAGTCGGTGTTGAGAGCTCTAAGGTCAAAGA
ATCGATTCAAATAGCCGAACCTGATCTAGATCCACCTTCATCCTTCCACCAAGCCCAGCCAGGAAATCATAACTTAAAATCCAGTGGGGGAGCAAATCAGGAAACTAAAT
CCAATGGCGGTCTAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTAACAAGAACCAGTTTCTTGTTTGGTCTCTTGGTGTTTCTCTGCTTAAGTCTCAGCTCTGCAAATCGAGTTCTCAAAGTGAGCAATGCTGAAAAGGAATCGAT
AAGTAACAGTGCATCTTCTGGGCACAATGATCAACTTGAAAATTTCAGCCATGCTGACCTAAACAGTAGCAAAATGCTAAAAGGTAGCATACCAAAGTATGTTTCGGTTG
GTCCAACGAGTGGCGACTGCTGCAACTATGACCATTGTGGTGAAAATGTGTGTCCTCCCAGCTACAGTTGTGGTGGAAACTGTGGTTGTCCATCCTATCACAATTGTCCA
TGGCAGGGATGCCAAGGATATCAAGGGTGCCAGGGATGCCAAGGATGCCAGGCGTGCCAACCTCCGCCCTGTGACTATAAAGTCGGTGTTGAGAGCTCTAAGGTCAAAGA
ATCGATTCAAATAGCCGAACCTGATCTAGATCCACCTTCATCCTTCCACCAAGCCCAGCCAGGAAATCATAACTTAAAATCCAGTGGGGGAGCAAATCAGGAAACTAAAT
CCAATGGCGGTCTAGTTTAG
Protein sequenceShow/hide protein sequence
MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSSKMLKGSIPKYVSVGPTSGDCCNYDHCGENVCPPSYSCGGNCGCPSYHNCP
WQGCQGYQGCQGCQGCQACQPPPCDYKVGVESSKVKESIQIAEPDLDPPSSFHQAQPGNHNLKSSGGANQETKSNGGLV