CuGenDBv2

Gene ID	Sed0006342
Organism	Sechium edule (Chayote v1)
Description	radixin-like isoform X1
Genome location	LG14:6217636..6220844
RNA-Seq Expression	Sed0006342
Synteny	Sed0006342
Gene Ontology terms	GO:0051983 - regulation of chromosome segregation (biological process)
InterPro domains	IPR044951 - Kinetochore protein SPC24-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022144074.1 uncharacterized protein LOC111013852 isoform X1 [Momordica charantia]

1.8e-83

82.09

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Query:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN
        M DF+GK+NIEELLSYGNDLVALLKDQKDVQTLNQCL+HV+ L+S CDDDFS VHSSV+DYEKKIEACRQKTEEAKARTV D +M++LE+ELEEEL  E+
Subjt:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN

Query:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS
        LLMEEIRLVT+EINELD QRI +QE KQAMKKLEQ+ELRAQR+LSMYASVTDIIPNMD+QSKISGHIV+R K+VVQKFELDPTK  AFDICN IW+ I+S
Subjt:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS

Query:  P
        P
Subjt:  P

XP_022144075.1 uncharacterized protein LOC111013852 isoform X2 [Momordica charantia]

1.2e-79

80.1

Show/hide

Query:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN
        M DF+GK+NIEELLSYGNDLVALLKDQKDVQTLNQCL+HV+ L+S CDDDFS VH    +YEKKIEACRQKTEEAKARTV D +M++LE+ELEEEL  E+
Subjt:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN

Query:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS
        LLMEEIRLVT+EINELD QRI +QE KQAMKKLEQ+ELRAQR+LSMYASVTDIIPNMD+QSKISGHIV+R K+VVQKFELDPTK  AFDICN IW+ I+S
Subjt:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS

Query:  P
        P
Subjt:  P

XP_022931907.1 uncharacterized protein LOC111438184 [Cucurbita moschata]

6.6e-78

78.11

Show/hide

Query:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN
        M DF+GKMNIE+LLSYG+DLVALLKDQ DVQTLNQCL H   L+SS  DD   VHSSV+DYEKKIE CR KTEEAKARTV D +M+ILEKE+EEE+  E+
Subjt:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN

Query:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS
        LLMEEIRLV+N+INELDRQRI +QE KQA KKLEQ+ELRAQR+LSMYASVTDIIPNMD+ SKISGHIV+R K+VVQKFELDPTKM +FDICNDIWN I+S
Subjt:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS

Query:  P
        P
Subjt:  P

XP_022966574.1 uncharacterized protein LOC111466216 [Cucurbita maxima]

1.7e-78

79.6

Show/hide

Query:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN
        M DF+GKMNIEELLSYGNDLV LLKDQ DVQTLNQCL H   L+SSC DDFS VH  V+DYEKKIE CR KTEEAKARTV D +M+ILEKE+EEEL  E+
Subjt:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN

Query:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS
        LLMEEIRLVTN+INELDRQRI +QE KQA KKLEQ+ELRAQR+LSMYASVTDIIPNMD+ SKISGHIV+R K+VVQKFELDPTK  +FDICNDIWN I+S
Subjt:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS

Query:  P
        P
Subjt:  P

XP_023518318.1 uncharacterized protein LOC111781837 [Cucurbita pepo subsp. pepo]

1.3e-78

78.61

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Query:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN
        M DF+GKMNIE+LLSYG+DLVALLKDQ DVQTLNQCL     L+SSC DD   VHSSV+DYEKKIE CR KTEEAKARTV D +M+ILEKE+EEE+  E+
Subjt:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN

Query:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS
        LLMEEIRLVTN+INELDRQRI +QE KQA KKLEQ+ELRAQR+LSMYASVTDIIPNMD+ SKISGHIV+R K+VVQKFELDPTKM +FDICNDIWN I+S
Subjt:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS

Query:  P
        P
Subjt:  P

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CQL9 uncharacterized protein LOC111013852 isoform X2

5.8e-80

80.1

Show/hide

Query:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN
        M DF+GK+NIEELLSYGNDLVALLKDQKDVQTLNQCL+HV+ L+S CDDDFS VH    +YEKKIEACRQKTEEAKARTV D +M++LE+ELEEEL  E+
Subjt:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN

Query:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS
        LLMEEIRLVT+EINELD QRI +QE KQAMKKLEQ+ELRAQR+LSMYASVTDIIPNMD+QSKISGHIV+R K+VVQKFELDPTK  AFDICN IW+ I+S
Subjt:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS

Query:  P
        P
Subjt:  P

A0A6J1CR83 uncharacterized protein LOC111013852 isoform X1

8.7e-84

82.09

Show/hide

Query:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN
        M DF+GK+NIEELLSYGNDLVALLKDQKDVQTLNQCL+HV+ L+S CDDDFS VHSSV+DYEKKIEACRQKTEEAKARTV D +M++LE+ELEEEL  E+
Subjt:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN

Query:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS
        LLMEEIRLVT+EINELD QRI +QE KQAMKKLEQ+ELRAQR+LSMYASVTDIIPNMD+QSKISGHIV+R K+VVQKFELDPTK  AFDICN IW+ I+S
Subjt:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS

Query:  P
        P
Subjt:  P

A0A6J1F034 uncharacterized protein LOC111438184

3.2e-78

78.11

Show/hide

Query:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN
        M DF+GKMNIE+LLSYG+DLVALLKDQ DVQTLNQCL H   L+SS  DD   VHSSV+DYEKKIE CR KTEEAKARTV D +M+ILEKE+EEE+  E+
Subjt:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN

Query:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS
        LLMEEIRLV+N+INELDRQRI +QE KQA KKLEQ+ELRAQR+LSMYASVTDIIPNMD+ SKISGHIV+R K+VVQKFELDPTKM +FDICNDIWN I+S
Subjt:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS

Query:  P
        P
Subjt:  P

A0A6J1HU69 uncharacterized protein LOC111466216

8.4e-79

79.6

Show/hide

Query:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN
        M DF+GKMNIEELLSYGNDLV LLKDQ DVQTLNQCL H   L+SSC DDFS VH  V+DYEKKIE CR KTEEAKARTV D +M+ILEKE+EEEL  E+
Subjt:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN

Query:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS
        LLMEEIRLVTN+INELDRQRI +QE KQA KKLEQ+ELRAQR+LSMYASVTDIIPNMD+ SKISGHIV+R K+VVQKFELDPTK  +FDICNDIWN I+S
Subjt:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS

Query:  P
        P
Subjt:  P

A0A6J1IPN8 uncharacterized protein LOC111478320

7.1e-78

76.62

Show/hide

Query:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN
        M+DFAGK NIEE+LSYG+DLVALL DQ DVQTLNQCL+H + L+SSC DDFS V SSV+DYEKKIEACRQKTEEAKA TV D +++ILEKEL EELG  N
Subjt:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN

Query:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS
        LLMEEIR++T+EIN+LDRQRI +QE KQAMKKLEQ+ELR QR+LSMYASVTDIIPNMD+QSKISGHIV+R K+VVQ+FE DPT + +FDICN IWN I+S
Subjt:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDS

Query:  P
        P
Subjt:  P

SwissProt top hits

e value

%identity

Alignment

Q67XT3 Kinetochore protein SPC24 homolog

9.1e-38

39.7

Show/hide

Query:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN
        M + +   +IE+L+SYG+DL+ LL  +     ++Q  +  + L  +C +DF+ +  S+ED + K+ AC++KTEEA +    + ++E L+KEL+EE+  E 
Subjt:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN

Query:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRID
         L +E+RLV +E+ +L+ Q   + E KQ+ K+  + +LRA+++LSMYASVT++IP++D+ SKISG++V+R+K++++KF+ +  KM A++ CN IW+ I+
Subjt:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRID

Arabidopsis top hits

e value

%identity

Alignment

AT3G08880.1 unknown protein

6.5e-39

39.7

Show/hide

Query:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN
        M + +   +IE+L+SYG+DL+ LL  +     ++Q  +  + L  +C +DF+ +  S+ED + K+ AC++KTEEA +    + ++E L+KEL+EE+  E 
Subjt:  MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTEN

Query:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRID
         L +E+RLV +E+ +L+ Q   + E KQ+ K+  + +LRA+++LSMYASVT++IP++D+ SKISG++V+R+K++++KF+ +  KM A++ CN IW+ I+
Subjt:  LLMEEIRLVTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRID

AT5G01570.1 unknown protein

1.6e-29

37.1

Show/hide

Query:  NIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTENLLMEEIRL
        N E ++S+G++L+ +L D+K    L Q L+ +R +  SCD+DF  +H S++D +KK++ C++KT+EA +   ++ ++E L+KEL+EEL  E  L EE+  
Subjt:  NIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTENLLMEEIRL

Query:  VTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPA-FDICND
                 R     +E + A+K+ ++ +LR + +L MYASVT +IPN+D+  K SG++V R K+++ KFE D  K  + ++ CN+
Subjt:  VTNEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPA-FDICND

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGCGATTTCGCCGGAAAGATGAACATCGAGGAGCTCTTGTCTTACGGAAACGATTTGGTGGCTCTCTTGAAGGACCAGAAGGATGTTCAAACTTTGAATCAATGTCT
CGATCATGTCAGGGTTCTTCGATCTTCCTGCGACGATGATTTCAGCACTGTTCACAGTTCGGTTGAAGATTATGAGAAGAAAATTGAGGCGTGTAGGCAGAAAACGGAGG
AGGCGAAAGCGAGAACGGTTGAAGATGTTGATATGGAAATTCTCGAAAAGGAGCTTGAAGAGGAACTTGGAACGGAGAATTTGCTCATGGAGGAGATTAGGCTTGTCACC
AATGAAATTAATGAACTAGATCGACAAAGGATTGGTCTTCAAGAAACGAAGCAGGCAATGAAGAAACTTGAGCAACGAGAACTCAGGGCGCAGAGGGAGCTTTCTATGTA
TGCTTCAGTCACTGATATCATCCCAAACATGGACAATCAGTCTAAAATTTCTGGCCATATTGTGAATAGAAAGAAACAGGTTGTGCAGAAGTTTGAATTGGATCCGACTA
AGATGCCTGCTTTTGATATATGCAATGACATTTGGAATAGGATTGATTCCCCTTAG

mRNA sequence

Show/hide mRNA sequence

CACAGATAAAGCCCATCAGATTTCAAGTCGGTCTCCTTAACCACTCGAGGAATTTGGTTCAAAAATCATTTATAATAGTAATATACATTTACAATTATCGGTTTTGGCGC
CTAAACTAAATCGATTTTTGTACTTTAGAGCCCTAAGAACAGATCTTCCCCAAAAAATGGCTCATCTCTGAAACTTCCCTGAATTCTTCACTTCAGTCTCGTTGTTGTTT
CGTTCATCGATTTGAGAAATGAGCGATTTCGCCGGAAAGATGAACATCGAGGAGCTCTTGTCTTACGGAAACGATTTGGTGGCTCTCTTGAAGGACCAGAAGGATGTTCA
AACTTTGAATCAATGTCTCGATCATGTCAGGGTTCTTCGATCTTCCTGCGACGATGATTTCAGCACTGTTCACAGTTCGGTTGAAGATTATGAGAAGAAAATTGAGGCGT
GTAGGCAGAAAACGGAGGAGGCGAAAGCGAGAACGGTTGAAGATGTTGATATGGAAATTCTCGAAAAGGAGCTTGAAGAGGAACTTGGAACGGAGAATTTGCTCATGGAG
GAGATTAGGCTTGTCACCAATGAAATTAATGAACTAGATCGACAAAGGATTGGTCTTCAAGAAACGAAGCAGGCAATGAAGAAACTTGAGCAACGAGAACTCAGGGCGCA
GAGGGAGCTTTCTATGTATGCTTCAGTCACTGATATCATCCCAAACATGGACAATCAGTCTAAAATTTCTGGCCATATTGTGAATAGAAAGAAACAGGTTGTGCAGAAGT
TTGAATTGGATCCGACTAAGATGCCTGCTTTTGATATATGCAATGACATTTGGAATAGGATTGATTCCCCTTAGTACCAGCCATCAATTGTGAATTATCTGTTTGTTTTG
TTATATATGTATGTTTAAAGGACTGGCTTCTAAAGTAGGTGTCGTTTGTGATAATTTTTTGCAAATCATATCTCCTTCGAGTTCGTCCTTGAAGATTTTCTAAGTTAAGG
AATGCCCATCTATGTTAGGAACCAAGCCATGAAAATGGTAATGAAGTGTGCAGCATTGTTGCTCATCTTCATGAATATTTGATTCTCAATGGACAACTGACTTTGTATGC
ATTCCACTCATCTGAGTTTAATTTTAGAAACCT

Protein sequence

Show/hide protein sequence

MSDFAGKMNIEELLSYGNDLVALLKDQKDVQTLNQCLDHVRVLRSSCDDDFSTVHSSVEDYEKKIEACRQKTEEAKARTVEDVDMEILEKELEEELGTENLLMEEIRLVT
NEINELDRQRIGLQETKQAMKKLEQRELRAQRELSMYASVTDIIPNMDNQSKISGHIVNRKKQVVQKFELDPTKMPAFDICNDIWNRIDSP

Sed0006342 (gene) of Chayote v1 genome