; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0006346 (gene) of Chayote v1 genome

Gene IDSed0006346
OrganismSechium edule (Chayote v1)
DescriptiontRNA pseudouridine synthase
Genome locationLG09:6686082..6690795
RNA-Seq ExpressionSed0006346
SyntenySed0006346
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0008033 - tRNA processing (biological process)
GO:0034196 - acylglycerol transport (biological process)
GO:1990052 - ER to chloroplast lipid transport (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0070300 - phosphatidic acid binding (molecular function)
GO:0106029 - tRNA pseudouridine synthase activity (molecular function)
InterPro domainsIPR001406 - Pseudouridine synthase I, TruA
IPR020094 - Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal
IPR020095 - Pseudouridine synthase I, TruA, C-terminal
IPR020097 - Pseudouridine synthase I, TruA, alpha/beta domain
IPR020103 - Pseudouridine synthase, catalytic domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138518.2 uncharacterized protein LOC101205797 [Cucumis sativus]9.4e-14676.42Show/hide
Query:  MRNWVAGSTVVP--SNPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL
        MR W  GS V+P  S P+SP   SPN +SSS++R F     D+ Y+ EP  P FKWRLLIAYDGT YAGWQYQ+SPPTIQCLIE+AL  ATK+ERKDL L
Subjt:  MRNWVAGSTVVP--SNPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL

Query:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA
        VGASRTD GVHAWGQVAHFVTPF++DSLE+VHAALNGLLP DIRVRE+SPAVPDFHARFST+SKVYHYKIY+ TI+DPFQR Y Y C+YKLN A M+EAA
Subjt:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA

Query:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL
        +YF+GKHDFSAF NAA NDRV NPVKVIFRFDVIEMG L+QLEVEGSGFLYRQVRNMVGLL+QIGKEA+ P+VVP+ILASRDR+ELAKYA  +PP GLCL
Subjt:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL

Query:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY
        VSI Y EDHLKLPS  PGTS GR  +VSKCK+PFY
Subjt:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY

XP_008458279.1 PREDICTED: tRNA pseudouridine synthase A 1 isoform X1 [Cucumis melo]4.2e-14677.01Show/hide
Query:  MRNWVAGSTVVP--SNPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL
        MR W  GS V+P  S P SP   SPN +SSS++R F  NA+DS Y+ EP  P FKWRLLIAYDGT YAGWQYQ+SPPTIQCLIE+AL  ATK+ERKDL L
Subjt:  MRNWVAGSTVVP--SNPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL

Query:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA
        VGASRTD GVHAWGQVAHFVTPF++DSLE+VHAALNGLLP DIRVRE+SPA PDFHARFST+SKVYHYKIYN TI+DPFQR Y Y C+YKLN A M+EAA
Subjt:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA

Query:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL
        +YF+GKHDFSAF NAA N+RV NPVKVIFRFDVIEMG L+QLEVEGSGFLYRQVRNMVGLL+QIGKEA+ P+VVP+ILASRDRKELAKYA  +PP GLCL
Subjt:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL

Query:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY
        VSI Y EDHLKLPS  PGTS GR  +V KCK+PFY
Subjt:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY

XP_023549334.1 uncharacterized protein LOC111807720 isoform X2 [Cucurbita pepo subsp. pepo]3.6e-14577.08Show/hide
Query:  MRNWVAGSTVVPS--NPISPTFTSPNRSSSSTARRFSKN-AQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLR
        M  W  GS V+PS   P+SP   S N  S ST R F    ++DS  V EP  P FKWRL++AYDGT YAGWQYQ+SPPTIQCLIE+ALT AT++ERKDL 
Subjt:  MRNWVAGSTVVPS--NPISPTFTSPNRSSSSTARRFSKN-AQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLR

Query:  LVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREA
        LVGASRTDTGVHAWGQVAHF+TPF++DSL+ +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYND ILDPFQR Y Y C+YKLN A M+EA
Subjt:  LVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREA

Query:  ASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLC
        A+YF+GKHDFSAFANAA NDRV NPVKV+FRFDVIEMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PDVVP+ILA+RDRKELAKY   IPPHGLC
Subjt:  ASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLC

Query:  LVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY
        LV I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Subjt:  LVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY

XP_023549337.1 uncharacterized protein LOC111807720 isoform X4 [Cucurbita pepo subsp. pepo]2.1e-14577.31Show/hide
Query:  MRNWVAGSTVVPS--NPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL
        M  W  GS V+PS   P+SP   S N  S ST R F  +   SC V EP  P FKWRL++AYDGT YAGWQYQ+SPPTIQCLIE+ALT AT++ERKDL L
Subjt:  MRNWVAGSTVVPS--NPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL

Query:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA
        VGASRTDTGVHAWGQVAHF+TPF++DSL+ +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYND ILDPFQR Y Y C+YKLN A M+EAA
Subjt:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA

Query:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL
        +YF+GKHDFSAFANAA NDRV NPVKV+FRFDVIEMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PDVVP+ILA+RDRKELAKY   IPPHGLCL
Subjt:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL

Query:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY
        V I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Subjt:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY

XP_038875516.1 tRNA pseudouridine synthase A 1 isoform X1 [Benincasa hispida]2.7e-14577.01Show/hide
Query:  MRNWVAGSTVVP--SNPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL
        MR W  GS V+P  S P+SP    PN +SSS++R  S NA+DS  +  P  P FKWRLLIAYDGT YAGWQYQ+SPPTIQCLIE+AL  ATK+ERKDL L
Subjt:  MRNWVAGSTVVP--SNPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL

Query:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA
        VGASRTD GVHAWGQVAHF+TPF++DSLE+VHAALNGLLP DIRVREISPA PDFHARFST+SKVYHYKIYN  ILDPFQR Y Y C+YKLN A M+EAA
Subjt:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA

Query:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL
        +YF+GKHDFSAF NAA NDRV NPVKVIFRFDVI+MGPL+QLEVEGSGFLYRQVRNMVGLL+QIGKEAI PDVVP+ILAS+DR+ELAKYA  +PP GLCL
Subjt:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL

Query:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY
        VSI Y EDHLKLPS  PGTS GR  +VSKCKLPFY
Subjt:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY

TrEMBL top hitse value%identityAlignment
A0A1S3C7L6 tRNA pseudouridine synthase2.0e-14677.01Show/hide
Query:  MRNWVAGSTVVP--SNPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL
        MR W  GS V+P  S P SP   SPN +SSS++R F  NA+DS Y+ EP  P FKWRLLIAYDGT YAGWQYQ+SPPTIQCLIE+AL  ATK+ERKDL L
Subjt:  MRNWVAGSTVVP--SNPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL

Query:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA
        VGASRTD GVHAWGQVAHFVTPF++DSLE+VHAALNGLLP DIRVRE+SPA PDFHARFST+SKVYHYKIYN TI+DPFQR Y Y C+YKLN A M+EAA
Subjt:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA

Query:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL
        +YF+GKHDFSAF NAA N+RV NPVKVIFRFDVIEMG L+QLEVEGSGFLYRQVRNMVGLL+QIGKEA+ P+VVP+ILASRDRKELAKYA  +PP GLCL
Subjt:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL

Query:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY
        VSI Y EDHLKLPS  PGTS GR  +V KCK+PFY
Subjt:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY

A0A6J1H4M7 tRNA pseudouridine synthase6.6e-14576.19Show/hide
Query:  MRNWVAGSTVVPSNP--ISPTFTSPNRSSSSTARRFSKN-AQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLR
        M  W  GS V+PS P  +SP+  S N  SS T R F    ++DS  V EP  P FKWRL+IAYDGT YAGWQYQ+SPPTIQCL+E+ALT AT++ERKDL 
Subjt:  MRNWVAGSTVVPSNP--ISPTFTSPNRSSSSTARRFSKN-AQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLR

Query:  LVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREA
        LVGASRTDTGVHAWGQVAHF+TPF++DSL+ +HAALNGLLPADIRVRE+SPAVPDFHARFST+SKVYHYKIYND ILDPFQR Y Y C+YKLN A M+EA
Subjt:  LVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREA

Query:  ASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLC
        A+YF+GKHDFSAFAN A NDRV NPVKVIFRFDVIEMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PD+VP+ILA+RDRKELAKY   IPP GLC
Subjt:  ASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLC

Query:  LVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY
        LV I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Subjt:  LVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY

A0A6J1H621 tRNA pseudouridine synthase3.9e-14576.42Show/hide
Query:  MRNWVAGSTVVPSNP--ISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL
        M  W  GS V+PS P  +SP+  S N  SS T R F  +   SC V EP  P FKWRL+IAYDGT YAGWQYQ+SPPTIQCL+E+ALT AT++ERKDL L
Subjt:  MRNWVAGSTVVPSNP--ISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL

Query:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA
        VGASRTDTGVHAWGQVAHF+TPF++DSL+ +HAALNGLLPADIRVRE+SPAVPDFHARFST+SKVYHYKIYND ILDPFQR Y Y C+YKLN A M+EAA
Subjt:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA

Query:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL
        +YF+GKHDFSAFAN A NDRV NPVKVIFRFDVIEMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PD+VP+ILA+RDRKELAKY   IPP GLCL
Subjt:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL

Query:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY
        V I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Subjt:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY

A0A6J1L0L1 tRNA pseudouridine synthase3.3e-14476.42Show/hide
Query:  MRNWVAGSTVVPS--NPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL
        M  W  GS V+PS   P+SP+   P+R + S+  R   N++DS  V EP  P FKWRL+IAYDGT YAGWQYQ+SPPTIQCLIE+ALT AT++ERKDL L
Subjt:  MRNWVAGSTVVPS--NPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRL

Query:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA
        VGASRTD GVHAWGQVAHF+TPF++DSL+ +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYND ILDPFQR Y Y C+YKLN A M+EAA
Subjt:  VGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAA

Query:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL
        +YF+GKHDFSAFAN A NDRV NPVKVIFRFDVIEMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PDVVP+ILASRDRK LAKY   IPP GLCL
Subjt:  SYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCL

Query:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY
        V I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Subjt:  VSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY

A0A6J1L2M8 tRNA pseudouridine synthase9.5e-14476.85Show/hide
Query:  MRNWVAGSTVVPS--NPISPTFTSPNRSS-SSTARRFS-KNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDL
        M  W  GS V+PS   P+SP+   P+R + SST R F   N++DS  V EP  P FKWRL+IAYDGT YAGWQYQ+SPPTIQCLIE+ALT AT++ERKDL
Subjt:  MRNWVAGSTVVPS--NPISPTFTSPNRSS-SSTARRFS-KNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDL

Query:  RLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMRE
         LVGASRTD GVHAWGQVAHF+TPF++DSL+ +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYND ILDPFQR Y Y C+YKLN A M+E
Subjt:  RLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMRE

Query:  AASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGL
        AA+YF+GKHDFSAFAN A NDRV NPVKVIFRFDVIEMG LIQLEVEGSGFLYRQVRNMV LL+QIGKEAI PDVVP+ILASRDRK LAKY   IPP GL
Subjt:  AASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGL

Query:  CLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY
        CLV I Y EDHLKLPS  PGTS GR H+VSKCKLPFY
Subjt:  CLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKLPFY

SwissProt top hitse value%identityAlignment
A4J151 tRNA pseudouridine synthase A5.7e-4540.24Show/hide
Query:  RLLIAYDGTPYAGWQYQQSP--PTIQCLIEKALTQATKVERKDLRLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPD
        +L +AYDGT Y G+Q Q+     TIQ  +EKAL   + + +  ++++GA RTD GVHA GQV +F +       E    ALN LLP DI+V +      D
Subjt:  RLLIAYDGTPYAGWQYQQSP--PTIQCLIEKALTQATKVERKDLRLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPD

Query:  FHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQV
        FHARFS ++K Y Y IY+  ++ PF R+Y Y    +L+   M+E A+Y +G +DF +F   AQ   V + ++ I+R D+IE  P+I L + G+GFLY  V
Subjt:  FHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQV

Query:  RNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCLVSIKY
        R + G L+ IG   I P+ + +I+ S++R      A   PP GLCL+ ++Y
Subjt:  RNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCLVSIKY

B1I1B5 tRNA pseudouridine synthase A1.0e-4942.46Show/hide
Query:  RLLIAYDGTPYAGWQYQQSP--PTIQCLIEKALTQATKVERKDLRLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPD
        RL +AYDGT Y G+Q Q     PTIQ  +E+ L + +      L++ GASRTD GVHA GQV +FVT       E + AALNG+LP DI   +      D
Subjt:  RLLIAYDGTPYAGWQYQQSP--PTIQCLIEKALTQATKVERKDLRLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPD

Query:  FHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQV
        FHAR+S ++K Y Y +YN  +  PFQR Y+      L+   MR AA + +G+HDFS F  A +   V + V+ + R D+    PL++L     GFLY  V
Subjt:  FHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQV

Query:  RNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCLVSIKYN
        R M G L+++G E + P+ +P I+AS DR   A+  P +PPHGLCL  ++Y+
Subjt:  RNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCLVSIKYN

Q6MEE7 tRNA pseudouridine synthase A 11.4e-5141.18Show/hide
Query:  WRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDF
        ++L IAYDGT Y+GWQ Q +  +IQ  I++AL    K E+  + LVG+ RTD GVHA GQVAHF      D L  +H +LNGLLP DIR++ + P  P F
Subjt:  WRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDF

Query:  HARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVG-NPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQV
        H+++S I K YHY ++ + ++DPFQR Y++    K++  ++++AA  F G HDF++FAN A       NPV+ ++R D+      ++LE EG GFLY+ V
Subjt:  HARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVG-NPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQV

Query:  RNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCLVSIKYNEDH
        RN+VG L+ +     + + + QI A+++R++ +  A   PP GL L+ + Y  ++
Subjt:  RNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCLVSIKYNEDH

Q8R7Y7 tRNA pseudouridine synthase A7.5e-4544.76Show/hide
Query:  LLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHA
        L+I YDGT Y GWQYQ++  T+Q ++EKA+    KV  + + L+G+SRTDTGVHA  QVA+F T       E +  ALN +LP D+ V +       FHA
Subjt:  LLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHA

Query:  RFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNM
        R+S  SK Y Y I N     P  R Y +   Y L+   M++AA +F G HDFSAF  A+ N +V NPVK IF   V + G LI++EVE  GFLY  VR +
Subjt:  RFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNM

Query:  VGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCLVSIKY
        VG L+ +G   I    +P I+ S+DR +    A   PP GL LV I Y
Subjt:  VGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCLVSIKY

Q9PJT0 tRNA pseudouridine synthase A4.8e-4440Show/hide
Query:  LLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRLVGASRTDTGVHAWGQVAHFVTPF--SFDSLETVHAALNGLLPADIRVREISPAVPDF
        L IAY GT Y+GWQYQ +  +IQ ++E   T   K+ R  + ++ + RTD GVHA GQVAHF  P    F     +   LN LLP DI +R++     DF
Subjt:  LLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRLVGASRTDTGVHAWGQVAHFVTPF--SFDSLETVHAALNGLLPADIRVREISPAVPDF

Query:  HARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVR
        H+RFS I+K YHY +       P  R + +   +KL    MREAA Y +G HDF++FAN  +     + V+ ++  D++E   L+ +  +G+GFLY+ VR
Subjt:  HARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVR

Query:  NMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCLVSIKY
        N+VG L+ IGK    P+ + ++L  +DRK   K  P  PP+GL L  + Y
Subjt:  NMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCLVSIKY

Arabidopsis top hitse value%identityAlignment
AT1G34150.1 Pseudouridine synthase family protein1.7e-1529.37Show/hide
Query:  RRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQ-QSPPTIQCLIEKAL--TQATKVERKDLRLVGASRTDTGVHAWGQV------AHFVTPFS
        R+  KN+  S  +++ Y       L I Y G  + G+  + Q  P+I+  + KAL  T+    ++KD       RTD GV + GQV      +   +P  
Subjt:  RRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQ-QSPPTIQCLIEKAL--TQATKVERKDLRLVGASRTDTGVHAWGQV------AHFVTPFS

Query:  FDSLETVHA------------ALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAF
         DS   V+              LN  LP DIRV   SPA  DFHARFS  ++ Y Y  +                   LN + M  A   FIG+HDF  F
Subjt:  FDSLETVHA------------ALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAF

Query:  ANAAQNDRVGNPVKVIFRFDVIEMGP---------LIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKY
                V N      R    E+ P         L    + GS FL+ Q+R MV +L  IG+   S DV+  +L ++      +Y
Subjt:  ANAAQNDRVGNPVKVIFRFDVIEMGP---------LIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKY

AT3G06950.1 Pseudouridine synthase family protein3.2e-12065.75Show/hide
Query:  STVVPSNPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRLVGASRTDTG
        S V P+ P S  FT  N   SS       N   S  V++  S  +KWRL+IAYDGT +AGWQYQ+SPPTIQ ++EKAL Q T++ RK+L+L+GA RTD G
Subjt:  STVVPSNPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRLVGASRTDTG

Query:  VHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDF
        VHAWGQVAHFVTPF++ SL++ HAALNGLLP DIRVRE+S AVP+FHARFS  SKVY Y+IYNDT +DPFQR +AY C YKLN++ MREAA+ F+GKHDF
Subjt:  VHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDF

Query:  SAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPF-IPPHGLCLVSIKYNED
        SAFANA + D V +P+K I RFDVI+MG L+QLEVEGSGFLYRQVRNMV LLIQIGKEA+  D+VP IL ++DR+ LAKY      PHGLCLVS+KY ED
Subjt:  SAFANAAQNDRVGNPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPF-IPPHGLCLVSIKYNED

Query:  HLKLPSGSPGTSSGRYHTVSKCKLPFY
        HLKLP   P TSSGR+HT++KCKLPFY
Subjt:  HLKLPSGSPGTSSGRYHTVSKCKLPFY

AT5G35400.1 Pseudouridine synthase family protein1.7e-0731.71Show/hide
Query:  WRLLIAYDGTPYAGWQYQQSPPTIQCLIEKAL--------TQATKVERKDL--RLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRV
        ++++++Y+G  + GWQ Q    T+Q ++EK+L         Q  K + K L  R++ A RTD GV A  QV  F T         +  A+N      +RV
Subjt:  WRLLIAYDGTPYAGWQYQQSPPTIQCLIEKAL--------TQATKVERKDL--RLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRV

Query:  REISPAVPDFHARFSTISKVYHY
          IS     FH  FS   + Y Y
Subjt:  REISPAVPDFHARFSTISKVYHY

AT5G35400.2 Pseudouridine synthase family protein1.7e-0731.71Show/hide
Query:  WRLLIAYDGTPYAGWQYQQSPPTIQCLIEKAL--------TQATKVERKDL--RLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRV
        ++++++Y+G  + GWQ Q    T+Q ++EK+L         Q  K + K L  R++ A RTD GV A  QV  F T         +  A+N      +RV
Subjt:  WRLLIAYDGTPYAGWQYQQSPPTIQCLIEKAL--------TQATKVERKDL--RLVGASRTDTGVHAWGQVAHFVTPFSFDSLETVHAALNGLLPADIRV

Query:  REISPAVPDFHARFSTISKVYHY
          IS     FH  FS   + Y Y
Subjt:  REISPAVPDFHARFSTISKVYHY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAACTGGGTAGCGGGTTCAACAGTTGTTCCTTCCAATCCCATTTCACCGACCTTCACATCTCCAAATCGCTCATCATCTTCCACAGCTCGCAGATTCTCGAAGAA
TGCACAGGATTCTTGTTATGTTGCAGAGCCTTATTCCCCTGGCTTTAAATGGCGGTTGCTCATTGCTTATGATGGTACTCCATATGCAGGCTGGCAATATCAGCAGTCAC
CGCCTACCATCCAGTGCCTGATTGAAAAAGCCTTGACTCAAGCAACAAAGGTTGAAAGGAAGGATCTCCGTTTAGTTGGTGCGAGCCGAACAGATACAGGAGTTCATGCC
TGGGGACAGGTGGCACACTTTGTTACGCCATTTAGCTTCGATAGCTTGGAAACGGTTCATGCTGCTCTGAATGGTCTTCTTCCTGCGGATATTAGAGTTCGGGAGATTAG
TCCTGCTGTTCCCGACTTTCATGCGCGATTTTCTACAATAAGCAAGGTTTATCACTACAAGATATATAATGACACCATCTTGGATCCATTTCAGCGCTTCTACGCTTACC
AATGCCTTTATAAACTCAATTCTGCAGTCATGAGAGAAGCTGCGAGTTATTTCATTGGAAAGCATGATTTTTCGGCTTTTGCGAATGCAGCGCAGAATGATCGAGTGGGA
AATCCAGTGAAGGTCATTTTTCGGTTTGATGTCATAGAAATGGGACCTCTAATTCAGCTAGAAGTTGAGGGCTCTGGGTTCTTGTATAGACAAGTTCGGAATATGGTTGG
CTTGTTGATTCAAATTGGAAAGGAAGCAATTTCTCCTGATGTTGTTCCTCAGATTTTGGCTTCTCGAGATCGCAAGGAGCTCGCCAAGTACGCTCCCTTCATTCCCCCTC
ACGGGCTCTGTCTTGTGAGCATTAAATATAACGAGGACCATCTAAAGCTTCCATCTGGTAGCCCTGGGACTAGTTCTGGTAGGTATCATACTGTGAGCAAATGTAAACTA
CCTTTTTATTGA
mRNA sequenceShow/hide mRNA sequence
GCCCTAAGCAAAGATCCATTTTGAATGTTGAATTGAAACAAAAGACTTGGAAGAGAAGGATGAGGAACTGGGTAGCGGGTTCAACAGTTGTTCCTTCCAATCCCATTTCA
CCGACCTTCACATCTCCAAATCGCTCATCATCTTCCACAGCTCGCAGATTCTCGAAGAATGCACAGGATTCTTGTTATGTTGCAGAGCCTTATTCCCCTGGCTTTAAATG
GCGGTTGCTCATTGCTTATGATGGTACTCCATATGCAGGCTGGCAATATCAGCAGTCACCGCCTACCATCCAGTGCCTGATTGAAAAAGCCTTGACTCAAGCAACAAAGG
TTGAAAGGAAGGATCTCCGTTTAGTTGGTGCGAGCCGAACAGATACAGGAGTTCATGCCTGGGGACAGGTGGCACACTTTGTTACGCCATTTAGCTTCGATAGCTTGGAA
ACGGTTCATGCTGCTCTGAATGGTCTTCTTCCTGCGGATATTAGAGTTCGGGAGATTAGTCCTGCTGTTCCCGACTTTCATGCGCGATTTTCTACAATAAGCAAGGTTTA
TCACTACAAGATATATAATGACACCATCTTGGATCCATTTCAGCGCTTCTACGCTTACCAATGCCTTTATAAACTCAATTCTGCAGTCATGAGAGAAGCTGCGAGTTATT
TCATTGGAAAGCATGATTTTTCGGCTTTTGCGAATGCAGCGCAGAATGATCGAGTGGGAAATCCAGTGAAGGTCATTTTTCGGTTTGATGTCATAGAAATGGGACCTCTA
ATTCAGCTAGAAGTTGAGGGCTCTGGGTTCTTGTATAGACAAGTTCGGAATATGGTTGGCTTGTTGATTCAAATTGGAAAGGAAGCAATTTCTCCTGATGTTGTTCCTCA
GATTTTGGCTTCTCGAGATCGCAAGGAGCTCGCCAAGTACGCTCCCTTCATTCCCCCTCACGGGCTCTGTCTTGTGAGCATTAAATATAACGAGGACCATCTAAAGCTTC
CATCTGGTAGCCCTGGGACTAGTTCTGGTAGGTATCATACTGTGAGCAAATGTAAACTACCTTTTTATTGAATTCATGACAGTTTACAGGTCTGTTCTTACACTTTTGCC
AATGACCATGAGCATAGTTTCCTGAGGATGAAATATTAGATTGCTAGTATGATTTAGTTAATTTTGGATTAGTTAGTTTGTAATATATATGAATTAGTATTTTAGTGTTA
GGTTGTTATTTGTAGTTTTAATATTGCATAACTTGTATTGAGACTTTG
Protein sequenceShow/hide protein sequence
MRNWVAGSTVVPSNPISPTFTSPNRSSSSTARRFSKNAQDSCYVAEPYSPGFKWRLLIAYDGTPYAGWQYQQSPPTIQCLIEKALTQATKVERKDLRLVGASRTDTGVHA
WGQVAHFVTPFSFDSLETVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNDTILDPFQRFYAYQCLYKLNSAVMREAASYFIGKHDFSAFANAAQNDRVG
NPVKVIFRFDVIEMGPLIQLEVEGSGFLYRQVRNMVGLLIQIGKEAISPDVVPQILASRDRKELAKYAPFIPPHGLCLVSIKYNEDHLKLPSGSPGTSSGRYHTVSKCKL
PFY