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Sed0006359 (gene) of Chayote v1 genome

Gene IDSed0006359
OrganismSechium edule (Chayote v1)
DescriptionGag/pol protein
Genome locationLG02:37248143..37248586
RNA-Seq ExpressionSed0006359
SyntenySed0006359
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-3761.81Show/hide
Query:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ
        AR YILAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V EHVL MM +FN+ EMNG VIDEA QV  IL+ L  SFLQ
Subjt:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ

Query:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ
        F+SNAVMNKIA+  T LLNELQTFES+MK+KG++G+ANV T  +
Subjt:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ

KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-3761.81Show/hide
Query:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ
        AR YILAS+S +LA K E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V EHVL MM +FNM EMNG VIDEA QV  IL+ LS SFLQ
Subjt:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ

Query:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ
        F+SNAVMNKIA+  T +LNELQTFES+MK+KG++G+ANV T  +
Subjt:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ

KAA0046844.1 gag/pol protein [Cucumis melo var. makuwa]8.4e-3861.81Show/hide
Query:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ
        AR Y+LAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G LV EHVL MM YFN+ EMNG VIDEA QV  IL+ L  SFLQ
Subjt:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ

Query:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ
        F+SN VMNKIA+  T LLNELQTFES+MK+KG++G+ANV T  +
Subjt:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-3761.81Show/hide
Query:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ
        AR YILAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V EHVL MM +FN+ EMNG VIDEA QV  IL+ L  SFLQ
Subjt:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ

Query:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ
        F+SNAVMNKIA+  T LLNELQTFES+MK+KG++G+ANV T  +
Subjt:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-3761.81Show/hide
Query:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ
        AR YILAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V EHVL MM +FN+ EMNG VIDEA QV  IL+ L  SFLQ
Subjt:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ

Query:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ
        F+SNAVMNKIA+  T LLNELQTFES+MK+KG++G+ANV T  +
Subjt:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein9.0e-3861.81Show/hide
Query:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ
        AR YILAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V EHVL MM +FN+ EMNG VIDEA QV  IL+ L  SFLQ
Subjt:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ

Query:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ
        F+SNAVMNKIA+  T LLNELQTFES+MK+KG++G+ANV T  +
Subjt:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ

A0A5A7TYF5 Gag/pol protein6.9e-3861.81Show/hide
Query:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ
        AR YILAS+S +LA K E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V EHVL MM +FNM EMNG VIDEA QV  IL+ LS SFLQ
Subjt:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ

Query:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ
        F+SNAVMNKIA+  T +LNELQTFES+MK+KG++G+ANV T  +
Subjt:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ

A0A5A7V4M1 Gag/pol protein9.0e-3861.81Show/hide
Query:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ
        AR YILAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V EHVL MM +FN+ EMNG VIDEA QV  IL+ L  SFLQ
Subjt:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ

Query:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ
        F+SNAVMNKIA+  T LLNELQTFES+MK+KG++G+ANV T  +
Subjt:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ

A0A5D3C269 Gag/pol protein4.0e-3861.81Show/hide
Query:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ
        AR Y+LAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G LV EHVL MM YFN+ EMNG VIDEA QV  IL+ L  SFLQ
Subjt:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ

Query:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ
        F+SN VMNKIA+  T LLNELQTFES+MK+KG++G+ANV T  +
Subjt:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ

A0A5D3CPJ6 Gag/pol protein9.0e-3861.81Show/hide
Query:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ
        AR YILAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V EHVL MM +FN+ EMNG VIDEA QV  IL+ L  SFLQ
Subjt:  ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQ

Query:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ
        F+SNAVMNKIA+  T LLNELQTFES+MK+KG++G+ANV T  +
Subjt:  FKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGGTCTATATCTTGGCGAGTGTCTCGAACATTCTAGCCAAGAAACTAGAGAATATGGTAATTACTTTAGAGATAATGAGAGCCCTTCATAAGATGTTTGGGAA
ACCATCGTCTCAAGTAAAACATGATGCTCTCTGGGAAATTCATGGTGCTAAGATGAAGTCAGGAATGTTAGTGATGGAGCATGTGCTCCAGATGATGACATACTTCAACA
TGGGTGAAATGAATGGCGTTGTTATAGACGAAGCTATTCAGGTGAGAATTATTCTTAAGATGCTATCGAGTAGCTTCTTACAATTTAAAAGCAACGCTGTTATGAACAAG
ATTGCTTTTAACCCCACTATTCTTCTTAATGAACTTCAAACTTTTGAGTCTATGATGAAAGTCAAGGGAAAAGAAGGGAAGGCAAATGTTGTCACCAAGAATCAGAATTC
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGGGTCTATATCTTGGCGAGTGTCTCGAACATTCTAGCCAAGAAACTAGAGAATATGGTAATTACTTTAGAGATAATGAGAGCCCTTCATAAGATGTTTGGGAA
ACCATCGTCTCAAGTAAAACATGATGCTCTCTGGGAAATTCATGGTGCTAAGATGAAGTCAGGAATGTTAGTGATGGAGCATGTGCTCCAGATGATGACATACTTCAACA
TGGGTGAAATGAATGGCGTTGTTATAGACGAAGCTATTCAGGTGAGAATTATTCTTAAGATGCTATCGAGTAGCTTCTTACAATTTAAAAGCAACGCTGTTATGAACAAG
ATTGCTTTTAACCCCACTATTCTTCTTAATGAACTTCAAACTTTTGAGTCTATGATGAAAGTCAAGGGAAAAGAAGGGAAGGCAAATGTTGTCACCAAGAATCAGAATTC
TTGA
Protein sequenceShow/hide protein sequence
MARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQFKSNAVMNK
IAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQNS