CuGenDBv2

Gene ID	Sed0006370
Organism	Sechium edule (Chayote v1)
Description	EAF domain-containing protein
Genome location	LG03:6982284..6986406
RNA-Seq Expression	Sed0006370
Synteny	Sed0006370
Gene Ontology terms	GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0032783 - ELL-EAF complex (cellular component) GO:0003711 - transcription elongation regulator activity (molecular function)
InterPro domains	IPR019194 - Transcription elongation factor Eaf, N-terminal IPR027093 - EAF family

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6579241.1 Ell-associated factor Eaf, partial [Cucurbita argyrosperma subsp. sororia]

2.9e-131

78.39

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Query:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF
        MAN+NKEEPK+AP+ D WY LSLGPSFN ESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVT+EFQNNQLGKPNVAFVGSSEDYK+NDAVLFFDGETF
Subjt:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD
        RLERLHRAVKQLRHLRQPGES+A A     ST+AS   SLT PEPRLSPP  KV KPMHMGR SFP V VEVE+IDIG+PGNTG K V +SKG ADYSSD
Subjt:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD

Query:  TPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRT-----
         P V APSPGPKN+DEH DIDI DIFGSVSSDD+ NN EE+KV+ GFDI NVPH NDTDDEIADVDDSGDEAEKGPNAAEALRAQV+AEGR G T     
Subjt:  TPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRT-----

Query:  -------------SSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI
                     SSSS+S+SGSGSSS SSSGSSDSEG+DEDS++SI
Subjt:  -------------SSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI

XP_022151706.1 ELL-associated factor 1 [Momordica charantia]

1.1e-127

78.85

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Query:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF
        MAN NKEEPK+AP+++ WY LSLGPSF  ESSNKFCTLRYEFKPASIDKTKPGSLKKTK+NRVTVEFQNNQLG+PNVAFVGSSED K+NDAVLFFDGETF
Subjt:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD
        RLERLHRAV  LRH+RQ  ESA T      S T S+P SLTVPEPRLSPP  KV KPMHMGR+SFP+VPVEVERIDIG+PGNTG  SV +SK +ADY+SD
Subjt:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD

Query:  TPVV--PAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRTSSS
         P V  P+PSPG  N+DEH DIDI +IFGSVSS DDGNNVEEEK+++GFDI NVPH NDTDDEIADVDDSGDEA+KGPNAAEALRAQV+AEGR+ +TSSS
Subjt:  TPVV--PAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRTSSS

Query:  STSKSGSGSSSRSSSGSSDSEGSDEDSISSI
        S+S+SGSGSSS SSSGSSDSE SDEDS++SI
Subjt:  STSKSGSGSSSRSSSGSSDSEGSDEDSISSI

XP_022939831.1 ELL-associated factor 1 [Cucurbita moschata]

1.0e-131

78.67

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Query:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF
        MAN+NKEEPK+AP+ D WY LSLGPSFN ESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVT+EFQNNQLGKPNVAFVGSSEDYK+NDAVLFFDGETF
Subjt:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD
        RLERLHRAVKQLRHLRQPGES+A A  A  ST+AS   SLT PEPRLSPP  KV KPMHMGR SFP V VEVE+IDIG+PGNTG K V +SKG ADYSSD
Subjt:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD

Query:  TPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRT-----
         P V APSPGPKN+DEH DIDI DIFGSVSSDD+ NN EE+KV+ GFDI NVPH NDTDDEIADVDDSGDEAEKGPNAAEALRAQV+AEGR G T     
Subjt:  TPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRT-----

Query:  -------------SSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI
                     SSSS+S+SGSGSSS SSSGSSDSEG+DEDS++SI
Subjt:  -------------SSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI

XP_022993461.1 ELL-associated factor 1 [Cucurbita maxima]

7.6e-132

78.67

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Query:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF
        MAN+NKEEPK+AP+ D WY LSLGPSFN ESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVT+EFQNNQLGKPNVAFVGSSEDYK+NDAVLFFDGETF
Subjt:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD
        RLERLHRAVKQLRHLRQPGES+A    A  ST+AS   SLT PEPRLSPP  KV KPMHMGR SFP V VEVE+IDIG+PGNTG KSV +SKG ADYSSD
Subjt:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD

Query:  TPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRT-----
         P V APSPGPKN+DEH DIDI DIFGSVSSDD+ NN EE+KV+ GFDI NVPH NDTDDEIADVDDSGDEAEKGPNAAEALRAQV+AEGR G T     
Subjt:  TPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRT-----

Query:  -------------SSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI
                     SSSS+S+SGSGSSS SSSGSSDSEG+DEDS++SI
Subjt:  -------------SSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI

XP_038893321.1 ELL-associated factor 2-like [Benincasa hispida]

3.8e-131

76.94

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Query:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF
        MAN+NKEEPK+AP+ D WY LSLGPSF  ESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQ GKPNVAFVGSSEDYK+NDAVLFFDGETF
Subjt:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTT-------------ASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKS
        RLERLHRAVKQLRHLRQPGESAA AA A P+TT             AS   SLT PEPRLSPP  KVAKPMHMGR SFP +PVEVERIDIG+PGNTG KS
Subjt:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTT-------------ASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKS

Query:  VTSSKGIADYSSDTPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVD
        V +SKG+ADYSSD P V A SPG KN+DEH DIDI D+FGSV S DDGNN EEE+VE GFDI N+PHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQV+
Subjt:  VTSSKGIADYSSDTPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVD

Query:  AEGRNGRT------------------SSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI
        AEGR G T                  SSSS+S SGSGSSS SSSGSSDSEGSDEDS++SI
Subjt:  AEGRNGRT------------------SSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KM56 EAF domain-containing protein

5.4e-123

76.7

Show/hide

Query:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF
        MAN+  EEPK+AP+ D WY LSLGPSF  ESSNKFCT RYEFKPASIDKTKPG LKKTKENRVTVEFQN+Q GKPN++FVGSSEDYK+NDAVLFFDGETF
Subjt:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAA----------TAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTS
        RLERLHRAV QLRHLRQPGESAA           AA A   TTAS+  SLT PEPRLSPP  KV+KPMHMGR+SFP +PVEVERIDIG+PGN G K+V +
Subjt:  RLERLHRAVKQLRHLRQPGESAA----------TAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTS

Query:  SKGIADYSSDTPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEG
        SKG+ +YSSD P V   SPG KN+DEH DIDI DIFGSVSS DDGNN EEE+VE GFDI N+PHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQV+AEG
Subjt:  SKGIADYSSDTPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEG

Query:  RNGRTSSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI
        R  ++SSSS+S SGSGSSS SSS SSDSE SDEDS++SI
Subjt:  RNGRTSSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI

A0A1S3C0N3 ELL-associated factor 2

1.5e-125

76.61

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Query:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF
        MAN+  EEPK+AP+ D WY LSLGPSF  ESSNKFCT RYEFKPASIDKTKPG LKKTKENRVTVEFQN+Q GKPN++F+GSSEDYKDNDAVLFFDGETF
Subjt:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTT-------------ASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKS
        RLERLHRAV QLRHLRQPGESAA AA A  +TT             AS+  SLT PEPRLSPP  KVAKPMHMGR+SFP +PVEVERIDIG+PGN G K 
Subjt:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTT-------------ASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKS

Query:  VTSSKGIADYSSDTPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVD
        V +SKG+ DYSSD P     SPG KN+DEH DIDI DIFGSVSS DDGNN EEE+VE GFDI N+PHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQV+
Subjt:  VTSSKGIADYSSDTPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVD

Query:  AEGRNGRTSSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI
        AEGR  ++SSSS+S SGSGSSS SSS SSDSEGSDEDS++SI
Subjt:  AEGRNGRTSSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI

A0A6J1DE82 ELL-associated factor 1

5.5e-128

78.85

Show/hide

Query:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF
        MAN NKEEPK+AP+++ WY LSLGPSF  ESSNKFCTLRYEFKPASIDKTKPGSLKKTK+NRVTVEFQNNQLG+PNVAFVGSSED K+NDAVLFFDGETF
Subjt:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD
        RLERLHRAV  LRH+RQ  ESA T      S T S+P SLTVPEPRLSPP  KV KPMHMGR+SFP+VPVEVERIDIG+PGNTG  SV +SK +ADY+SD
Subjt:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD

Query:  TPVV--PAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRTSSS
         P V  P+PSPG  N+DEH DIDI +IFGSVSS DDGNNVEEEK+++GFDI NVPH NDTDDEIADVDDSGDEA+KGPNAAEALRAQV+AEGR+ +TSSS
Subjt:  TPVV--PAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRTSSS

Query:  STSKSGSGSSSRSSSGSSDSEGSDEDSISSI
        S+S+SGSGSSS SSSGSSDSE SDEDS++SI
Subjt:  STSKSGSGSSSRSSSGSSDSEGSDEDSISSI

A0A6J1FGX9 ELL-associated factor 1

4.8e-132

78.67

Show/hide

Query:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF
        MAN+NKEEPK+AP+ D WY LSLGPSFN ESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVT+EFQNNQLGKPNVAFVGSSEDYK+NDAVLFFDGETF
Subjt:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD
        RLERLHRAVKQLRHLRQPGES+A A  A  ST+AS   SLT PEPRLSPP  KV KPMHMGR SFP V VEVE+IDIG+PGNTG K V +SKG ADYSSD
Subjt:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD

Query:  TPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRT-----
         P V APSPGPKN+DEH DIDI DIFGSVSSDD+ NN EE+KV+ GFDI NVPH NDTDDEIADVDDSGDEAEKGPNAAEALRAQV+AEGR G T     
Subjt:  TPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRT-----

Query:  -------------SSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI
                     SSSS+S+SGSGSSS SSSGSSDSEG+DEDS++SI
Subjt:  -------------SSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI

A0A6J1JWD6 ELL-associated factor 1

3.7e-132

78.67

Show/hide

Query:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF
        MAN+NKEEPK+AP+ D WY LSLGPSFN ESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVT+EFQNNQLGKPNVAFVGSSEDYK+NDAVLFFDGETF
Subjt:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD
        RLERLHRAVKQLRHLRQPGES+A    A  ST+AS   SLT PEPRLSPP  KV KPMHMGR SFP V VEVE+IDIG+PGNTG KSV +SKG ADYSSD
Subjt:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD

Query:  TPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRT-----
         P V APSPGPKN+DEH DIDI DIFGSVSSDD+ NN EE+KV+ GFDI NVPH NDTDDEIADVDDSGDEAEKGPNAAEALRAQV+AEGR G T     
Subjt:  TPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRT-----

Query:  -------------SSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI
                     SSSS+S+SGSGSSS SSSGSSDSEG+DEDS++SI
Subjt:  -------------SSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI

SwissProt top hits

e value

%identity

Alignment

B3NA01 Ell-associated factor Eaf

4.7e-07

Show/hide

Query:  KLSLGPSFNPE-SSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQ-LGKPNVAFVGSSEDYKDNDAVLFFDGET--FRLERLHR--AVKQLR
        +L LG +FNP+ +S  F T++Y+FKPAS+D ++  S+     N+VTV   N++  G P+  + G+  +Y   + ++ +D ET    +E+L+    VK+ R
Subjt:  KLSLGPSFNPE-SSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQ-LGKPNVAFVGSSEDYKDNDAVLFFDGET--FRLERLHR--AVKQLR

Query:  H------LRQPGESAATAAGAG----PSTTASLPQSLTVP
        +      ++ PG++A+   G G         S+P  ++ P
Subjt:  H------LRQPGESAATAAGAG----PSTTASLPQSLTVP

B4HQT6 Ell-associated factor Eaf

8.0e-07

31.34

Show/hide

Query:  KLSLGPSFNPE-SSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQ-LGKPNVAFVGSSEDYKDNDAVLFFDGET--FRLERLHR--AVKQLR
        +L LG +FNP+ +S  F T++Y+FKPAS+D ++  S+     N+VTV   N++  G P+  + G+  +Y   + ++ +D ET    +E+L+    VK+ R
Subjt:  KLSLGPSFNPE-SSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQ-LGKPNVAFVGSSEDYKDNDAVLFFDGET--FRLERLHR--AVKQLR

Query:  H------LRQPGESAAT-------AAGAGPSTTA
        +      ++ PG++          A GAGP+ T+
Subjt:  H------LRQPGESAAT-------AAGAGPSTTA

B4LMA2 Ell-associated factor Eaf

1.8e-06

33.85

Show/hide

Query:  DHWYKLSLGPSFNPE-SSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQN-NQLGKPNVAFVGSSEDYKDNDAVLFFDGET--FRLERLHR--AV
        D   +L LG +FNP+ +S  F T++Y+FKPAS+D ++  ++     N+VTV   N    G P   + G+ + Y   + ++ FD ET    LERL+    V
Subjt:  DHWYKLSLGPSFNPE-SSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQN-NQLGKPNVAFVGSSEDYKDNDAVLFFDGET--FRLERLHR--AV

Query:  KQLRHLRQPGESAATAAGAGPSTTASLPQS
        K+ R       S  +A  A  S  A +P S
Subjt:  KQLRHLRQPGESAATAAGAGPSTTASLPQS

B4P1N5 Ell-associated factor Eaf

6.1e-07

31.97

Show/hide

Query:  KLSLGPSFNPE-SSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQ-LGKPNVAFVGSSEDYKDNDAVLFFDGET--FRLERLHR--AVKQLR
        +L LG +FNP+ +S  F T++Y+FKPAS+D ++  S+     N+VTV   N++  G P+  + G+  +Y   + ++ +D ET    +E+L+    VK+ R
Subjt:  KLSLGPSFNPE-SSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQ-LGKPNVAFVGSSEDYKDNDAVLFFDGET--FRLERLHR--AVKQLR

Query:  ------HLRQPGESAATAAGAG
               ++ PG+ A+   G G
Subjt:  ------HLRQPGESAATAAGAG

Q7JRJ1 Ell-associated factor Eaf

6.7e-06

30.15

Show/hide

Query:  KLSLGPSFNPE-SSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQ-LGKPNVAFVGSSEDYKDNDAVLFFDGET--FRLERLHR--AVKQLR
        +L LG +FNP+ +S  F T++Y+FKPAS+D ++  S+     N+VTV   N++  G P+  + G+  +Y   + ++ +D ET    +E+L+    VK+ R
Subjt:  KLSLGPSFNPE-SSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQ-LGKPNVAFVGSSEDYKDNDAVLFFDGET--FRLERLHR--AVKQLR

Query:  H------LRQPGESAATAAGAGPSTTASLPQSLTVP
        +      ++ PG++       G +  A  P ++ VP
Subjt:  H------LRQPGESAATAAGAGPSTTASLPQSLTVP

Arabidopsis top hits

e value

%identity

Alignment

AT1G71080.1 RNA polymerase II transcription elongation factor

1.4e-67

52.12

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Query:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF
        M+N +++EP +AP+ D WY L LG S   +SS+KFCTLRYEFKPASIDK + GS+ K K+NRV+VEFQNNQ GKP V F GSSEDYK++DAVLFFDGE F
Subjt:  MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD
        RLERLHRAV QLRH+R PGESAA +  A P             E RLS P  + AK   + R+  P VPVEVERI+IG P N+   + T +         
Subjt:  RLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSD

Query:  TPVVPAPSP-GPKNE--DEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQ-NDTDDEIADV-DDSGDEAEKGPNAAEALRAQVDAEGRNGRT
           VPA SP   KN+  DEH +ID+V+IFGS + ++D  N E+E  + G  + ++  Q + T++EIADV DDSG E EKG NAAEALRAQV+AE +  +T
Subjt:  TPVVPAPSP-GPKNE--DEHIDIDIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQ-NDTDDEIADV-DDSGDEAEKGPNAAEALRAQVDAEGRNGRT

Query:  SSSSTS----------------KSGSGSSSRSSSGSSD--SEGS-DEDSISSI
        SSSS+S                 SGSGS  +SSSGSS   S GS DED ++S+
Subjt:  SSSSTS----------------KSGSGSSSRSSSGSSD--SEGS-DEDSISSI

AT5G38050.1 RNA polymerase II transcription elongation factor

6.0e-42

40.71

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Query:  NSNKEEPKSAPEADHWYKLSLGPSF---NPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDY--KDNDAVLFFDG
        +++ EEPK APE + WY ++LGP+    N   S KFCTLRYEFKPASID TKPG L K+K+N+VT+EFQNNQL KP V F G SEDY  +D DA+LFFDG
Subjt:  NSNKEEPKSAPEADHWYKLSLGPSF---NPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDY--KDNDAVLFFDG

Query:  ETFRLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADY
        E FRLE+LHR+VK+L+ LR P ESA+ +                    ++ PP  K               PV++  IDI +P               D+
Subjt:  ETFRLERLHRAVKQLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADY

Query:  SSDTPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEI-GFDIN-NVPHQND-TDDEIADVDDSGDEAEKGPNAAEALRAQVDAE-----
          D                           ++  D++   +  ++ +  G DI+ N+PH  +  DDEIA VD + DE+ KG NAAEALRAQV+AE     
Subjt:  SSDTPVVPAPSPGPKNEDEHIDIDIVDIFGSVSSDDDGNNVEEEKVEI-GFDIN-NVPHQND-TDDEIADVDDSGDEAEKGPNAAEALRAQVDAE-----

Query:  --------GRNGRTSSSSTSKSGSGSSSRSSSGSSDSEG
                GR   +S S    SGSGSSS S S  S SEG
Subjt:  --------GRNGRTSSSSTSKSGSGSSSRSSSGSSDSEG

Sequences

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CDS sequence

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ATGGCTAACAGCAACAAAGAAGAGCCGAAGAGCGCACCTGAGGCCGATCACTGGTACAAGCTATCTCTCGGCCCGTCCTTCAACCCCGAATCCTCCAACAAATTCTGCAC
TCTCCGATATGAGTTCAAGCCGGCGTCGATCGACAAGACCAAGCCGGGATCCCTGAAGAAGACCAAGGAAAATAGGGTTACGGTTGAATTTCAGAACAACCAATTGGGGA
AACCTAATGTCGCGTTTGTCGGCAGCAGTGAGGATTATAAGGATAATGATGCTGTCTTGTTTTTTGACGGCGAGACCTTCCGGTTGGAGCGCCTCCACCGGGCGGTCAAG
CAGCTCCGCCACCTTCGACAACCTGGGGAATCCGCTGCCACCGCCGCCGGTGCCGGTCCCTCCACCACCGCTTCTCTTCCTCAGTCTTTGACGGTGCCGGAGCCGAGGTT
GTCTCCTCCGCCGCCTAAAGTGGCCAAACCTATGCATATGGGTCGAAACAGTTTCCCGATTGTGCCGGTAGAGGTGGAAAGAATAGATATTGGAGATCCAGGAAATACAG
GTCCGAAATCTGTTACTTCTAGTAAAGGGATTGCTGATTACTCATCAGATACACCAGTTGTCCCTGCTCCCTCTCCGGGCCCAAAGAATGAGGATGAACATATAGATATA
GATATTGTTGACATTTTCGGGTCTGTTTCATCGGATGATGATGGAAATAATGTCGAGGAAGAAAAGGTTGAAATTGGATTTGATATAAACAACGTACCACATCAGAATGA
TACCGATGATGAAATCGCTGATGTGGATGATAGTGGTGACGAGGCTGAGAAGGGACCGAATGCTGCAGAAGCCCTCAGGGCTCAGGTTGATGCAGAGGGCAGGAACGGCC
GGACTTCGAGTTCTAGTACCAGCAAGTCGGGCAGTGGTAGCAGCAGCAGAAGTAGCAGTGGCAGCAGCGACAGCGAAGGTAGCGATGAGGATTCCATTTCTTCAATCTGA

mRNA sequence

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ATGGAGTGTTATTTTTGTAGTGGAGTTCGATTCGATCCGGCCCTTAGCGTTGTGAAGCGCAATGGCTAACAGCAACAAAGAAGAGCCGAAGAGCGCACCTGAGGCCGATC
ACTGGTACAAGCTATCTCTCGGCCCGTCCTTCAACCCCGAATCCTCCAACAAATTCTGCACTCTCCGATATGAGTTCAAGCCGGCGTCGATCGACAAGACCAAGCCGGGA
TCCCTGAAGAAGACCAAGGAAAATAGGGTTACGGTTGAATTTCAGAACAACCAATTGGGGAAACCTAATGTCGCGTTTGTCGGCAGCAGTGAGGATTATAAGGATAATGA
TGCTGTCTTGTTTTTTGACGGCGAGACCTTCCGGTTGGAGCGCCTCCACCGGGCGGTCAAGCAGCTCCGCCACCTTCGACAACCTGGGGAATCCGCTGCCACCGCCGCCG
GTGCCGGTCCCTCCACCACCGCTTCTCTTCCTCAGTCTTTGACGGTGCCGGAGCCGAGGTTGTCTCCTCCGCCGCCTAAAGTGGCCAAACCTATGCATATGGGTCGAAAC
AGTTTCCCGATTGTGCCGGTAGAGGTGGAAAGAATAGATATTGGAGATCCAGGAAATACAGGTCCGAAATCTGTTACTTCTAGTAAAGGGATTGCTGATTACTCATCAGA
TACACCAGTTGTCCCTGCTCCCTCTCCGGGCCCAAAGAATGAGGATGAACATATAGATATAGATATTGTTGACATTTTCGGGTCTGTTTCATCGGATGATGATGGAAATA
ATGTCGAGGAAGAAAAGGTTGAAATTGGATTTGATATAAACAACGTACCACATCAGAATGATACCGATGATGAAATCGCTGATGTGGATGATAGTGGTGACGAGGCTGAG
AAGGGACCGAATGCTGCAGAAGCCCTCAGGGCTCAGGTTGATGCAGAGGGCAGGAACGGCCGGACTTCGAGTTCTAGTACCAGCAAGTCGGGCAGTGGTAGCAGCAGCAG
AAGTAGCAGTGGCAGCAGCGACAGCGAAGGTAGCGATGAGGATTCCATTTCTTCAATCTGATTGAAATGAAGCCGATGAGTTTTTTGAGCCTTGAGAATCTATCTTAAGA
CGATTGAAGTATGCAAAAACTTGCTCGACCATTGCCTTGTGATTCATACTTCATTTTTTATTGGTAGTTTGTTTTATTTATGCTATGGAAAAACTCTTAGAATAATGTTA
TTGTAAAATAAATTTTCAAATATAGTGATTTTGGTCTATGTGGTCTATTTTACCAGATTCATATTAAATTTCATTTTTAATCCTTATTTCAA

Protein sequence

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MANSNKEEPKSAPEADHWYKLSLGPSFNPESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQLGKPNVAFVGSSEDYKDNDAVLFFDGETFRLERLHRAVK
QLRHLRQPGESAATAAGAGPSTTASLPQSLTVPEPRLSPPPPKVAKPMHMGRNSFPIVPVEVERIDIGDPGNTGPKSVTSSKGIADYSSDTPVVPAPSPGPKNEDEHIDI
DIVDIFGSVSSDDDGNNVEEEKVEIGFDINNVPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVDAEGRNGRTSSSSTSKSGSGSSSRSSSGSSDSEGSDEDSISSI

Sed0006370 (gene) of Chayote v1 genome