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Sed0006371 (gene) of Chayote v1 genome

Gene IDSed0006371
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG11:4774689..4775215
RNA-Seq ExpressionSed0006371
SyntenySed0006371
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651649.1 hypothetical protein Csa_021260, partial [Cucumis sativus]2.4e-2871.15Show/hide
Query:  MRSNHSFRSRRTATSIRNLKQTRKRRSKLIHLPENTPSAAVPAA--RAAPSAAARRRLRDLQKLVPGHGHETDLNHLFQRTADHIFALQLKLNILKDLTS
        MRS HSFRSRR AT+I  LK +R+RR KL+HLP++T S+ V A   R  PSAA  +RLR+LQ+LVPGH HET+LNHLFQRTAD+I ALQLKLNILKDLTS
Subjt:  MRSNHSFRSRRTATSIRNLKQTRKRRSKLIHLPENTPSAAVPAA--RAAPSAAARRRLRDLQKLVPGHGHETDLNHLFQRTADHIFALQLKLNILKDLTS

Query:  FYGL
        FYGL
Subjt:  FYGL
KAG6598843.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]2.4e-2870.48Show/hide
Query:  MRSNHSFRSRRTATSIRNLKQTRKRRSKLIHLPENTPSAAVPAARA---APSAAARRRLRDLQKLVPGHGHETDLNHLFQRTADHIFALQLKLNILKDLT
        MRS HSFR RR ATS  NLK TR+RR KL+HLP+NT S++  +A A    PS A  +RLR+LQ+LVPGH H+TDLNHLFQRTAD+I ALQLKLNILKDLT
Subjt:  MRSNHSFRSRRTATSIRNLKQTRKRRSKLIHLPENTPSAAVPAARA---APSAAARRRLRDLQKLVPGHGHETDLNHLFQRTADHIFALQLKLNILKDLT

Query:  SFYGL
        SFYGL
Subjt:  SFYGL
OMP08066.1 hypothetical protein COLO4_06805 [Corchorus olitorius]4.2e-0435.29Show/hide
Query:  MRSNHSFRSRRTATSIRNLKQTRKRRSKLIHLPENTPSAAVPAARAAPSAAARRRLRDLQKLVPGHGHETDLNHLFQRTADHIFALQLKLNILKDLTSFY
        MRS  S R RR     R  ++ R R+  L +LP N  S +      +   +  R+L +LQ+++P   +E +++ LFQ TAD+IF L+ K+++L++L++FY
Subjt:  MRSNHSFRSRRTATSIRNLKQTRKRRSKLIHLPENTPSAAVPAARAAPSAAARRRLRDLQKLVPGHGHETDLNHLFQRTADHIFALQLKLNILKDLTSFY

Query:  GL
        G+
Subjt:  GL
TrEMBL top hitse value%identityAlignment
A0A0A0LJ57 Uncharacterized protein1.2e-2871.15Show/hide
Query:  MRSNHSFRSRRTATSIRNLKQTRKRRSKLIHLPENTPSAAVPAA--RAAPSAAARRRLRDLQKLVPGHGHETDLNHLFQRTADHIFALQLKLNILKDLTS
        MRS HSFRSRR AT+I  LK +R+RR KL+HLP++T S+ V A   R  PSAA  +RLR+LQ+LVPGH HET+LNHLFQRTAD+I ALQLKLNILKDLTS
Subjt:  MRSNHSFRSRRTATSIRNLKQTRKRRSKLIHLPENTPSAAVPAA--RAAPSAAARRRLRDLQKLVPGHGHETDLNHLFQRTADHIFALQLKLNILKDLTS

Query:  FYGL
        FYGL
Subjt:  FYGL
A0A1R3KLV4 Uncharacterized protein2.0e-0435.29Show/hide
Query:  MRSNHSFRSRRTATSIRNLKQTRKRRSKLIHLPENTPSAAVPAARAAPSAAARRRLRDLQKLVPGHGHETDLNHLFQRTADHIFALQLKLNILKDLTSFY
        MRS  S R RR     R  ++ R R+  L +LP N  S +      +   +  R+L +LQ+++P   +E +++ LFQ TAD+IF L+ K+++L++L++FY
Subjt:  MRSNHSFRSRRTATSIRNLKQTRKRRSKLIHLPENTPSAAVPAARAAPSAAARRRLRDLQKLVPGHGHETDLNHLFQRTADHIFALQLKLNILKDLTSFY

Query:  GL
        G+
Subjt:  GL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTCCAACCACTCATTCCGATCAAGAAGAACAGCCACCTCCATTCGAAACCTCAAACAAACGAGAAAGAGAAGGTCAAAGCTTATTCACCTCCCCGAAAACACCCC
CTCCGCTGCCGTCCCTGCTGCCCGAGCAGCCCCCTCCGCTGCCGCTCGTAGGAGGCTGAGAGATCTGCAGAAGCTGGTCCCCGGCCACGGCCATGAAACTGATCTCAACC
ACTTGTTTCAAAGAACTGCAGATCACATCTTTGCTTTGCAACTTAAGCTCAACATCCTCAAAGATCTCACTTCTTTCTATGGCCTTTGA
mRNA sequenceShow/hide mRNA sequence
CCCTTCACAAAACAACCCATCTCTCTCTCTCTCTCTCTCTTTATTTCACCATATTTTGGAAGCAAACAAACAAGAAAATGAGGTCCAACCACTCATTCCGATCAAGAAGA
ACAGCCACCTCCATTCGAAACCTCAAACAAACGAGAAAGAGAAGGTCAAAGCTTATTCACCTCCCCGAAAACACCCCCTCCGCTGCCGTCCCTGCTGCCCGAGCAGCCCC
CTCCGCTGCCGCTCGTAGGAGGCTGAGAGATCTGCAGAAGCTGGTCCCCGGCCACGGCCATGAAACTGATCTCAACCACTTGTTTCAAAGAACTGCAGATCACATCTTTG
CTTTGCAACTTAAGCTCAACATCCTCAAAGATCTCACTTCTTTCTATGGCCTTTGAGTCATTTCCATAATATTGTTATTATTATTGTTGTTATTATTTCGTTTAGGTATA
TGCTTTTTTATTTATATATAGTTTAAAGTATTTCTGTCCTTTGATTCCTTGTAATTTCAATACTTCTAATAAATTTTAAAATTAGTT
Protein sequenceShow/hide protein sequence
MRSNHSFRSRRTATSIRNLKQTRKRRSKLIHLPENTPSAAVPAARAAPSAAARRRLRDLQKLVPGHGHETDLNHLFQRTADHIFALQLKLNILKDLTSFYGL