CuGenDBv2

Gene ID	Sed0006388
Organism	Sechium edule (Chayote v1)
Description	E3 ubiquitin-protein ligase RNF34
Genome location	LG04:31313910..31315653
RNA-Seq Expression	Sed0006388
Synteny	Sed0006388
Gene Ontology terms	GO:0000492 - box C/D snoRNP assembly (biological process)
InterPro domains	IPR027921 - NOP protein chaperone 1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596894.1 hypothetical protein SDJN03_10074, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-26

49.72

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Query:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM
        MRH+SKDLL     D+  S   SSL++C                         LGRVKDF GVLSEAN+KL L AKD AEKYDIEAL+G+ESEVIELDLM
Subjt:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM

Query:  LGSGDLHTPEVVAAAESAIIGNQPAI---------------------------TRDNEKSENQNTNFCNVSSVKTQKIK
        LG  DLHTPE VAAAESAIIGNQP I                             DNEKS+NQN++  N  SVK ++ K
Subjt:  LGSGDLHTPEVVAAAESAIIGNQPAI---------------------------TRDNEKSENQNTNFCNVSSVKTQKIK

KAG7030170.1 hypothetical protein SDJN02_08517 [Cucurbita argyrosperma subsp. argyrosperma]

8.0e-29

56.86

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Query:  MRHSSKDLLNYLHFDVKESSSLVLCLWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLMLGSGDLHTPEVVAAAESAIIGNQPAI
        MRH+SKDLL     D+  SS     L LGRVKDF GVLSEAN+KL L AKD AEKYDIEAL+G+ESEVIELDLMLG  DLHTPE VAAAESAIIGNQP I
Subjt:  MRHSSKDLLNYLHFDVKESSSLVLCLWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLMLGSGDLHTPEVVAAAESAIIGNQPAI

Query:  ---------------------------TRDNEKSENQNTNFCNVSSVKTQKIK
                                     DNEKS+NQN++  N  SVK ++ K
Subjt:  ---------------------------TRDNEKSENQNTNFCNVSSVKTQKIK

XP_022936657.1 uncharacterized protein LOC111443185 isoform X1 [Cucurbita moschata]

2.0e-27

50.28

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Query:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM
        MRH+SKDLL     D+  S   SSL++C                         LGRVKDF GVLSEAN+KL L AKD AEKYDIEAL+G+ESEVIELDLM
Subjt:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM

Query:  LGSGDLHTPEVVAAAESAIIGNQPAIT---------------------------RDNEKSENQNTNFCNVSSVKTQKIK
        LG  DLHTPE VAAAESAIIGNQP I                             DNEKS+NQNT+  N  SVK +++K
Subjt:  LGSGDLHTPEVVAAAESAIIGNQPAIT---------------------------RDNEKSENQNTNFCNVSSVKTQKIK

XP_023005549.1 uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]

7.5e-27

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Query:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM
        MRH+SKDLL     D+  S   SSL++C                         LGRVKDF GVLSEAN+KL L AKD AEKYDIEAL+GNESEVIELDLM
Subjt:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM

Query:  LGSGDLHTPEVVAAAESAIIGNQPAI----------------------------TRDNEKSENQNTNFCNVSSVKTQKIK
        LG  DLHTPE VAAAESAIIGNQP I                              DNEKS+ QNT+  N  SVK ++ K
Subjt:  LGSGDLHTPEVVAAAESAIIGNQPAI----------------------------TRDNEKSENQNTNFCNVSSVKTQKIK

XP_038903017.1 uncharacterized protein LOC120089721 [Benincasa hispida]

3.4e-27

50.86

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Query:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM
        MRH SKDLL     D+  S   SSL++C                       L LGRVKDF GV+SEAN+KL + AKD+AEKYDIEALDGNES+VIELDLM
Subjt:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM

Query:  LGSGDLHTPEVVAAAESAIIGNQPAI-------------------------TRDNEKSENQNTNFCNVSSVKTQK
        LG  DLHTPE VAAAESAIIGNQP I                           DNEKS++QNT+  N SSVK ++
Subjt:  LGSGDLHTPEVVAAAESAIIGNQPAI-------------------------TRDNEKSENQNTNFCNVSSVKTQK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L448 Uncharacterized protein

1.2e-25

47.7

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Query:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM
        MRH SKDLL     D+  S   SSL++C                       L LGRVKDF GV+SEAN+KL + +K++AEKYDIEALDGNESEVI+LDLM
Subjt:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM

Query:  LGSGDLHTPEVVAAAESAIIGNQPAI------------------------TRDNEKSENQNTNFCNVSSVKTQK
        LG  DLHTPE V AAESAIIGN P I                          DNEKS++Q T+  N  SVK ++
Subjt:  LGSGDLHTPEVVAAAESAIIGNQPAI------------------------TRDNEKSENQNTNFCNVSSVKTQK

A0A1S3BJW4 uncharacterized protein LOC103490838

1.1e-26

47.7

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Query:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM
        MRH+SKDLL+    D+  S   SSL++C                       L LGRV+DF GV+SEAN+KL + +K++A+KYDIEALDGNESEVI+LDLM
Subjt:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM

Query:  LGSGDLHTPEVVAAAESAIIGNQPAI------------------------TRDNEKSENQNTNFCNVSSVKTQK
        LG  DLHTPE VAAAESAIIGN P I                          DNEKS++QNT+  N  SVK ++
Subjt:  LGSGDLHTPEVVAAAESAIIGNQPAI------------------------TRDNEKSENQNTNFCNVSSVKTQK

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF34

1.1e-26

47.7

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Query:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM
        MRH+SKDLL+    D+  S   SSL++C                       L LGRV+DF GV+SEAN+KL + +K++A+KYDIEALDGNESEVI+LDLM
Subjt:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM

Query:  LGSGDLHTPEVVAAAESAIIGNQPAI------------------------TRDNEKSENQNTNFCNVSSVKTQK
        LG  DLHTPE VAAAESAIIGN P I                          DNEKS++QNT+  N  SVK ++
Subjt:  LGSGDLHTPEVVAAAESAIIGNQPAI------------------------TRDNEKSENQNTNFCNVSSVKTQK

A0A6J1F913 uncharacterized protein LOC111443185 isoform X1

9.5e-28

50.28

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Query:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM
        MRH+SKDLL     D+  S   SSL++C                         LGRVKDF GVLSEAN+KL L AKD AEKYDIEAL+G+ESEVIELDLM
Subjt:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM

Query:  LGSGDLHTPEVVAAAESAIIGNQPAIT---------------------------RDNEKSENQNTNFCNVSSVKTQKIK
        LG  DLHTPE VAAAESAIIGNQP I                             DNEKS+NQNT+  N  SVK +++K
Subjt:  LGSGDLHTPEVVAAAESAIIGNQPAIT---------------------------RDNEKSENQNTNFCNVSSVKTQKIK

A0A6J1KZJ8 uncharacterized protein LOC111498503 isoform X1

3.6e-27

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Query:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM
        MRH+SKDLL     D+  S   SSL++C                         LGRVKDF GVLSEAN+KL L AKD AEKYDIEAL+GNESEVIELDLM
Subjt:  MRHSSKDLLNYLHFDVKES---SSLVLC-----------------------LWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLM

Query:  LGSGDLHTPEVVAAAESAIIGNQPAI----------------------------TRDNEKSENQNTNFCNVSSVKTQKIK
        LG  DLHTPE VAAAESAIIGNQP I                              DNEKS+ QNT+  N  SVK ++ K
Subjt:  LGSGDLHTPEVVAAAESAIIGNQPAI----------------------------TRDNEKSENQNTNFCNVSSVKTQKIK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71430.1 unknown protein

8.3e-16

51.19

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Query:  LGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLMLGSGDLHTPEVVAAAESAIIGNQPAITRDNEKSENQN
        LG++K F GV++EAN+    K++ + E Y+IEAL GNESE+IE+DLMLG  DL+TPE V+AAE+AI G  PA    +  S++++
Subjt:  LGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLMLGSGDLHTPEVVAAAESAIIGNQPAITRDNEKSENQN

Sequences

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CDS sequence

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ATGCGGCATTCTAGCAAGGATCTTTTGAATTACTTGCATTTTGATGTCAAGGAATCATCTTCCCTAGTTTTGTGTCTTTGGCTAGGAAGAGTCAAAGACTTCTTTGGAGT
ATTATCAGAAGCTAATCAAAAGCTGCCACTGAAGGCAAAGGACAGTGCTGAAAAATATGATATCGAAGCCCTCGATGGCAATGAATCAGAAGTCATTGAATTGGACCTGA
TGTTGGGAAGTGGCGACCTTCATACTCCTGAAGTTGTGGCTGCTGCTGAATCTGCAATAATTGGTAATCAACCTGCGATTACAAGGGACAACGAAAAGAGCGAAAACCAG
AATACCAACTTCTGTAACGTATCCTCAGTTAAAACTCAAAAGATAAAAGTCTAG

mRNA sequence

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Protein sequence

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MRHSSKDLLNYLHFDVKESSSLVLCLWLGRVKDFFGVLSEANQKLPLKAKDSAEKYDIEALDGNESEVIELDLMLGSGDLHTPEVVAAAESAIIGNQPAITRDNEKSENQ
NTNFCNVSSVKTQKIKV

Sed0006388 (gene) of Chayote v1 genome