CuGenDBv2

Gene ID	Sed0006426
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L18a
Genome location	LG06:19610948..19620450
RNA-Seq Expression	Sed0006426
Synteny	Sed0006426
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0006457 - protein folding (biological process) GO:0006508 - proteolysis (biological process) GO:0005783 - endoplasmic reticulum (cellular component) GO:0016020 - membrane (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0051082 - unfolded protein binding (molecular function)
InterPro domains	IPR023573 - Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A IPR028877 - 50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AFK33651.1 unknown [Lotus japonicus]

3.5e-53

76.67

Show/hide

Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVL INE     PT                         DTTLNGAVEHMYNEM SRHRVRSPCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        ATVPAKLCKRESTKQFH+SKIKFPLV+KK+RPPTRKLKTTYKASRPNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

RWR89097.1 60S ribosomal protein L18a-like protein [Cinnamomum micranthum f. kanehirae]

2.0e-53

77.33

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Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVL INE     PT                         DTTLNGAVE+MYNEM SRHRVRSPCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        AT+PAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

RWR89101.1 60S ribosomal protein L18a-like protein [Cinnamomum micranthum f. kanehirae]

2.0e-53

77.33

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Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVL INE     PT                         DTTLNGAVE+MYNEM SRHRVRSPCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        AT+PAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

XP_015877073.1 60S ribosomal protein L18a [Ziziphus jujuba]

5.9e-53

77.33

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Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVL INE     PT                         DTTLNGAVEHMY EM SRHRVRSPCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        ATVPAKLCKRESTKQFH+SKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

XP_024928667.1 aspartyl protease family protein 2 [Ziziphus jujuba]

1.6e-53

77.33

Show/hide

Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVL INE     PT                         DTTLNGAVEHMYNEM SRHRVRSPCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        AT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

TrEMBL top hits

e value

%identity

Alignment

A0A3S3MST0 60S ribosomal protein L18a

9.8e-54

77.33

Show/hide

Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVL INE     PT                         DTTLNGAVE+MYNEM SRHRVRSPCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        AT+PAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

A0A3S3NBT8 60S ribosomal protein L18a

9.8e-54

77.33

Show/hide

Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVL INE     PT                         DTTLNGAVE+MYNEM SRHRVRSPCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        AT+PAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

A0A6P3ZGB1 60S ribosomal protein L18a

2.9e-53

77.33

Show/hide

Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVL INE     PT                         DTTLNGAVEHMY EM SRHRVRSPCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        ATVPAKLCKRESTKQFH+SKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

A0A6P6G3D7 aspartyl protease family protein 2

7.5e-54

77.33

Show/hide

Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVL INE     PT                         DTTLNGAVEHMYNEM SRHRVRSPCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        AT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

I3S059 60S ribosomal protein L18a

1.7e-53

76.67

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Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVL INE     PT                         DTTLNGAVEHMYNEM SRHRVRSPCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        ATVPAKLCKRESTKQFH+SKIKFPLV+KK+RPPTRKLKTTYKASRPNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

SwissProt top hits

e value

%identity

Alignment

P51418 60S ribosomal protein L18a-2

3.0e-52

72.67

Show/hide

Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+L INE     PT                         DTTLNGAVE MY EM SRHRVR PCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        ATVPAKLCKRESTKQFH+SKIKFPLVF+KVRPP+RKLKTTYKA++PNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

Q8L7K0 60S ribosomal protein L18a-1

1.4e-49

69.33

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Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+L INE     PT                         DTTLNGAVE MY EM SRHRVR PCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        ATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTRKLKTT+KA++PNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

Q943F3 60S ribosomal protein L18a

1.4e-49

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Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+L INE     PT                         DTTLNGAVE MY EM SRHRVR PCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        ATV  KLCKR++TKQFH S IKFPLV++KVRPPTRKLKTT+KASRPNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

Q9ATF5 60S ribosomal protein L18a

2.8e-50

70.67

Show/hide

Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+L INE     PT                         DTTLNGAVE MY EM SRHRVR PCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        AT+PAKLCKRES+KQFH+SKIKFPLV +K+RPP+RKLKT YKASRPNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

Q9LUD4 60S ribosomal protein L18a-3

3.1e-49

69.33

Show/hide

Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+L INE     PT                         DTTLNG VE MY EM SRHRVR PCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        ATVPAKLCKRE TKQFH+SKIKFPLVF+KVRPP+RKLKTTYKAS+PNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

Arabidopsis top hits

e value

%identity

Alignment

AT1G29965.1 Ribosomal protein L18ae/LX family protein

1.0e-50

69.33

Show/hide

Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+L INE     PT                         DTTLNGAVE MY EM SRHRVR PCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        ATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTRKLKTT+KA++PNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

AT1G29970.2 60S ribosomal protein L18A-1

1.0e-50

69.33

Show/hide

Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+L INE     PT                         DTTLNGAVE MY EM SRHRVR PCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        ATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTRKLKTT+KA++PNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

AT2G34480.1 Ribosomal protein L18ae/LX family protein

2.2e-53

72.67

Show/hide

Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+L INE     PT                         DTTLNGAVE MY EM SRHRVR PCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        ATVPAKLCKRESTKQFH+SKIKFPLVF+KVRPP+RKLKTTYKA++PNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

AT3G14600.1 Ribosomal protein L18ae/LX family protein

2.2e-50

69.33

Show/hide

Query:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT
        MKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+L INE     PT                         DTTLNG VE MY EM SRHRVR PCIQIIKT
Subjt:  MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECL--FPT-------------------------DTTLNGAVEHMYNEMGSRHRVRSPCIQIIKT

Query:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
        ATVPAKLCKRE TKQFH+SKIKFPLVF+KVRPP+RKLKTTYKAS+PNLFM
Subjt:  ATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGCTGTGGGCAACCAACGAGGTCCGTGCCAAATCCAAGTTCTGGTACTTTTTGAGGAAGCTGAAGAAAGTTAAGAAGAGCAATGGTCAAGTTCTTATCATTAACGA
GTGTTTATTCCCAACAGATACGACATTGAATGGGGCTGTCGAGCACATGTATAACGAGATGGGCTCTCGCCATAGGGTGAGGAGCCCATGCATTCAAATCATTAAGACAG
CAACAGTTCCTGCAAAACTCTGCAAGAGGGAAAGTACCAAGCAGTTCCATGACTCAAAGATCAAATTCCCCTTGGTGTTTAAGAAGGTGAGGCCACCCACCAGGAAGCTC
AAGACAACATACAAAGCATCTAGGCCCAACCTGTTCATGTAA

mRNA sequence

Show/hide mRNA sequence

GTATTCGGGCCAATGGTGGAGGCAGAGCAGTTTAGGGTTTTCATTCATTAGCAACACAATTTTAGTTTAGCGCAGAGTTATTTGGCGATCGGTGTCGAGAGAACCAGAGA
GAAGCACCGGCGCCGATCCCTCTCAGATTCTTGAGTTCAAAATGGTCACATTCAAGTTTCATTAGTACCAAGTTGTGGGGAGAGCTCTTCCTTCTGAAGCTGATGAGCAT
CCCAAGATCTATCGGATGAAGCTGTGGGCAACCAACGAGGTCCGTGCCAAATCCAAGTTCTGGTACTTTTTGAGGAAGCTGAAGAAAGTTAAGAAGAGCAATGGTCAAGT
TCTTATCATTAACGAGTGTTTATTCCCAACAGATACGACATTGAATGGGGCTGTCGAGCACATGTATAACGAGATGGGCTCTCGCCATAGGGTGAGGAGCCCATGCATTC
AAATCATTAAGACAGCAACAGTTCCTGCAAAACTCTGCAAGAGGGAAAGTACCAAGCAGTTCCATGACTCAAAGATCAAATTCCCCTTGGTGTTTAAGAAGGTGAGGCCA
CCCACCAGGAAGCTCAAGACAACATACAAAGCATCTAGGCCCAACCTGTTCATGTAATTCTGCTCATTTTGAAATCTCTTTTTCTATGGAAACATTTGATTATTGATTTG
GGTAAATTATAAAAACTACCACAAGTAGATGAAGTTTCTGTAAAACCATTGGTTCTTGTTCTAGCTACAATTATTCCCTCTGTTTTGGAGGCTGTGAGATGAGTTTGACA
ATTTTGGTCTGATTAGTTTAAAGCAAA

Protein sequence

Show/hide protein sequence

MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLIINECLFPTDTTLNGAVEHMYNEMGSRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKL
KTTYKASRPNLFM

Sed0006426 (gene) of Chayote v1 genome