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Sed0006476 (gene) of Chayote v1 genome

Gene IDSed0006476
OrganismSechium edule (Chayote v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationLG13:25843550..25844765
RNA-Seq ExpressionSed0006476
SyntenySed0006476
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022857 - transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3446462.1 hypothetical protein FNV43_RR11641 [Rhamnella rubrinervis]5.4e-1251.43Show/hide
Query:  MGIK-WRNSRSQSIRLGKSC--DSNERESKGFGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPS-IVSRS
        MGIK W  S SQSIRLG++    +N+RE    GW+ +W+KI+++K K   SS V L+ SY+ N Y  NFDQG    +E D+LSRSFSARFADP+ I   +
Subjt:  MGIK-WRNSRSQSIRLGKSC--DSNERESKGFGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPS-IVSRS

Query:  LRLLD
          LLD
Subjt:  LRLLD

KAG6591653.1 hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sororia]2.4e-2874.76Show/hide
Query:  MGIKWRNSRSQSIRLGKSCDS-NERESKG-FGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLR
        MGIKWRNSRSQSIRLG+SC S NE+ESK  FGWQILWQK +KEK+++F  SSVELR SYN NAY LNF+Q  +  S+ DDL RSFSARFADPSIVSRS R
Subjt:  MGIKWRNSRSQSIRLGKSCDS-NERESKG-FGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLR

Query:  LLD
        LLD
Subjt:  LLD

KGN60340.2 hypothetical protein Csa_000895 [Cucumis sativus]5.7e-3075.49Show/hide
Query:  MGIKWRNSRSQSIRLGKSC-DSNERESKGFGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLRL
        MG+KWRNSRSQSIRLG+SC  SNE+ESK  GWQILW+K++KEK+KMF  SSVELR SYN NAY LNFD+  +  SE D+LSRSFSARFADPSIVSR+LRL
Subjt:  MGIKWRNSRSQSIRLGKSC-DSNERESKGFGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLRL

Query:  LD
        LD
Subjt:  LD

XP_022936244.1 uncharacterized protein LOC111442916 [Cucurbita moschata]1.8e-2874.76Show/hide
Query:  MGIKWRNSRSQSIRLGKSC-DSNERESKG-FGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLR
        MGIKWRNSRSQSIRLG+SC  SNE+ESK  FGWQILWQK +KEK+++F  SSVELR SYN NAY LNF+Q  +  S+ DDL RSFSARFADPSIVSRS R
Subjt:  MGIKWRNSRSQSIRLGKSC-DSNERESKG-FGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLR

Query:  LLD
        LLD
Subjt:  LLD

XP_023536137.1 uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo]9.1e-2873.79Show/hide
Query:  MGIKWRNSRSQSIRLGKSC-DSNERESKG-FGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLR
        MGIKWRNSRSQSIRLG+SC  SNE+ESK   GWQILWQK +KEK+++F  SSVELR SYN NAY LNF+Q  +  S+ DDL RSFSARFADPSIVSRS R
Subjt:  MGIKWRNSRSQSIRLGKSC-DSNERESKG-FGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLR

Query:  LLD
        LLD
Subjt:  LLD

TrEMBL top hitse value%identityAlignment
A0A0A0LJH9 Uncharacterized protein2.8e-3075.49Show/hide
Query:  MGIKWRNSRSQSIRLGKSC-DSNERESKGFGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLRL
        MG+KWRNSRSQSIRLG+SC  SNE+ESK  GWQILW+K++KEK+KMF  SSVELR SYN NAY LNFD+  +  SE D+LSRSFSARFADPSIVSR+LRL
Subjt:  MGIKWRNSRSQSIRLGKSC-DSNERESKGFGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLRL

Query:  LD
        LD
Subjt:  LD

A0A251RD41 Uncharacterized protein9.9e-1250.94Show/hide
Query:  MGIK-WRNSRSQSIRLGKS-CDSNERESKGFGWQILWQKIRKEKKKMFCSSSV---ELRSYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRS
        MGIK W NSRSQS+RLG+    SN  +    GWQ  W+K + +KKK   SSS    +  SY+   Y  NFD+G   S E D+LSRSFSARFADPS++  +
Subjt:  MGIK-WRNSRSQSIRLGKS-CDSNERESKGFGWQILWQKIRKEKKKMFCSSSV---ELRSYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRS

Query:  LR-LLD
         R LLD
Subjt:  LR-LLD

A0A498J7U7 Uncharacterized protein1.7e-1150.94Show/hide
Query:  MGIK-WRNSRSQSIRLGKSCDSNERESKGF-GWQILWQKIRKEKKKMFCSSSVELR---SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRS
        MGI+ WRNSRSQSIRLG + D     +K   GWQ  W++ + ++KK F SS+V  +   SY+ + Y  NFDQG     E D+L RSFSARFADPS V   
Subjt:  MGIK-WRNSRSQSIRLGKSCDSNERESKGF-GWQILWQKIRKEKKKMFCSSSVELR---SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRS

Query:  LR-LLD
         R LLD
Subjt:  LR-LLD

A0A5N5I1S5 Pentatricopeptide repeat-containing protein7.5e-1253.27Show/hide
Query:  MGIK-WRNSRSQSIRLGKSCD--SNERESKGFGWQILWQKIRKEKKKMFCSSSV---ELRSYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSR
        MGI+ WRNSRSQSIRLG + D  SN  +S+  GWQ  W++ + E+KK+F SS+V      SY+ + Y  NFDQG     E D+L RSFSARFADPS V  
Subjt:  MGIK-WRNSRSQSIRLGKSCD--SNERESKGFGWQILWQKIRKEKKKMFCSSSV---ELRSYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSR

Query:  SLR-LLD
          R LLD
Subjt:  SLR-LLD

A0A6J1F7R9 uncharacterized protein LOC1114429168.9e-2974.76Show/hide
Query:  MGIKWRNSRSQSIRLGKSC-DSNERESKG-FGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLR
        MGIKWRNSRSQSIRLG+SC  SNE+ESK  FGWQILWQK +KEK+++F  SSVELR SYN NAY LNF+Q  +  S+ DDL RSFSARFADPSIVSRS R
Subjt:  MGIKWRNSRSQSIRLGKSC-DSNERESKG-FGWQILWQKIRKEKKKMFCSSSVELR-SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLR

Query:  LLD
        LLD
Subjt:  LLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G25735.1 unknown protein2.6e-0435.87Show/hide
Query:  RLGKSC----DSNERESKGFGWQILWQKIRKEKKKMFCSSSVELRSYNSNAYELNFDQ--GFSCSSELDDLSRSFSARFADPSIVSRSLRLL
        R  KSC        RE     W++L  K++    +   +SS ++ +Y    Y LNFDQ  G+    E ++LSRSFS RFADP+ +  +  LL
Subjt:  RLGKSC----DSNERESKGFGWQILWQKIRKEKKKMFCSSSVELRSYNSNAYELNFDQ--GFSCSSELDDLSRSFSARFADPSIVSRSLRLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATCAAATGGCGAAATTCACGGAGCCAAAGCATCAGGTTGGGTAAGAGCTGCGATTCAAATGAACGAGAAAGCAAAGGCTTTGGATGGCAGATTTTGTGGCAAAA
AATCAGGAAAGAGAAAAAGAAAATGTTCTGTTCTTCTTCTGTTGAATTGCGTTCTTACAATTCAAATGCTTATGAGTTGAATTTTGATCAAGGATTCAGCTGCTCCTCTG
AGCTTGATGATCTCTCCAGATCTTTCTCCGCTCGTTTTGCTGATCCGTCGATCGTTTCGCGGAGCTTGAGATTGTTGGATTGA
mRNA sequenceShow/hide mRNA sequence
AAAAATGATCTAAAATTTATTAAATTGAATTAAGATTAAAAAAGTGGGTAAAAATTAATCCTCGGAATTCAGAAATTCTCTTGGGTCTCTACCCTATTTTTCATAAAATT
TAACTGGAAATATTTCAAAGATGAGGATTAAAATGAGTGGTAGGAGTAGGATAGTAAACCAATCCCTTCCTATTCCTATCTCGCTTAGTGGACATCTCTAATACCATCAA
TTTTGTAAGTTCATCAATTTCTTAAGACGTTGACAATGATGGCTTAAAGTCAAATAATAATCCACTCATCACGTTTATATTTTAATCCTAATTGCTCAACTCCCATCATT
TTTCCATTTGAAATTATGTACTAAATTGGAATTATACTTTACAATTGGCAAAGCCTGTCAGTTCTGACTATTTCCATTTCAAACAAACACAAAGTATAATTATTTATTTA
TTTATTTTCAGAATCTTTCGGCGGCTCTTTACATTGAAACCAAATCAATCTCTATTCCCTTTTAAGCTGCCTTCGCCAAATGGCAAATGATATCTTCTATTTCTTTTTTC
TCTCTCAACGTTTGGTACATTAATTCATTGACCCTTTTGATTTTTTGTTCTAATTTTCATAATTTTGGATTCAAATCAACAAATGGGAATCAAATGGCGAAATTCACGGA
GCCAAAGCATCAGGTTGGGTAAGAGCTGCGATTCAAATGAACGAGAAAGCAAAGGCTTTGGATGGCAGATTTTGTGGCAAAAAATCAGGAAAGAGAAAAAGAAAATGTTC
TGTTCTTCTTCTGTTGAATTGCGTTCTTACAATTCAAATGCTTATGAGTTGAATTTTGATCAAGGATTCAGCTGCTCCTCTGAGCTTGATGATCTCTCCAGATCTTTCTC
CGCTCGTTTTGCTGATCCGTCGATCGTTTCGCGGAGCTTGAGATTGTTGGATTGAAGTTCTTGTAAATTTTCAATGGCGTTTCTTGATGGGGTTTCTGTAATTTTTGTGA
CCCTTTTTCGAGATTTCAATGCCTTGTTTGTGCTTTTTTTTTAGTACACGAAGATTCAAATTTGTAATTTCTTGATCAAAGATATATGTTAATTTATACAGACAATGATC
TGTTTGTGCTTTGGAGTTTTGGTTTAATTCTACAGTACTGTGATTATTATGTGTTTGTTTTGTTGGGACTGTTTTTGTATCAGTTTATATGTTTTTCTTTCAAAGGAAGA
AAAGAA
Protein sequenceShow/hide protein sequence
MGIKWRNSRSQSIRLGKSCDSNERESKGFGWQILWQKIRKEKKKMFCSSSVELRSYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLRLLD