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Sed0006485 (gene) of Chayote v1 genome

Gene IDSed0006485
OrganismSechium edule (Chayote v1)
Descriptionnuclear pore complex protein NUP205
Genome locationLG06:13795220..13802776
RNA-Seq ExpressionSed0006485
SyntenySed0006485
Gene Ontology termsGO:0005643 - nuclear pore (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ97812.1 nuclear pore complex protein NUP205 [Cucumis melo var. makuwa]3.5e-0977.55Show/hide
Query:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
        MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Subjt:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
XP_011648678.1 nuclear pore complex protein NUP205 [Cucumis sativus]3.5e-0977.55Show/hide
Query:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
        MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Subjt:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
XP_022143113.1 nuclear pore complex protein NUP205 [Momordica charantia]5.3e-1070Show/hide
Query:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQVK-DVLGNPSSS
        MVGLVQLLLKSN ASSLVEDYAS LELRS++SH IEN+ DDP VLI+Q+  D +  P+ S
Subjt:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQVK-DVLGNPSSS
XP_022938219.1 nuclear pore complex protein NUP205 isoform X2 [Cucurbita moschata]3.5e-0977.55Show/hide
Query:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
        MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Subjt:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
XP_023537592.1 nuclear pore complex protein NUP205 isoform X2 [Cucurbita pepo subsp. pepo]3.5e-0977.55Show/hide
Query:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
        MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Subjt:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
TrEMBL top hitse value%identityAlignment
A0A0A0LI17 Uncharacterized protein1.7e-0977.55Show/hide
Query:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
        MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Subjt:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
A0A5A7V0A5 Nuclear pore complex protein NUP2051.7e-0977.55Show/hide
Query:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
        MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Subjt:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
A0A5D3BDG6 Nuclear pore complex protein NUP2051.7e-0977.55Show/hide
Query:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
        MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Subjt:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
A0A6J1CPX3 nuclear pore complex protein NUP2052.6e-1070Show/hide
Query:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQVK-DVLGNPSSS
        MVGLVQLLLKSN ASSLVEDYAS LELRS++SH IEN+ DDP VLI+Q+  D +  P+ S
Subjt:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQVK-DVLGNPSSS
A0A6J1FDF5 nuclear pore complex protein NUP205 isoform X21.7e-0977.55Show/hide
Query:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
        MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Subjt:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV
SwissProt top hitse value%identityAlignment
F4KBW6 Nuclear pore complex protein NUP2055.4e-0545Show/hide
Query:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQ-VKDVLGNPSSS
        +VGLV +L+K + A+SL+EDYA+ LE R ++   +EN+ DD  VLI+Q + D +  P+ S
Subjt:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQ-VKDVLGNPSSS
Q6K6N7 Probable protein phosphatase 2C 145.4e-0546.15Show/hide
Query:  LLLQLDHWSWRGKFSSSNIDDCTVVCLFLDSNLMVSETSLKPRKRLTQQSEL
        LL++  H +WR +F +S IDDC VVCLFLD++  +SETS    + +T   E+
Subjt:  LLLQLDHWSWRGKFSSSNIDDCTVVCLFLDSNLMVSETSLKPRKRLTQQSEL
Arabidopsis top hitse value%identityAlignment
AT1G79630.1 Protein phosphatase 2C family protein2.7e-0442.22Show/hide
Query:  SWRGKFSSSNIDDCTVVCLFLDSNLMVSETSLKPRKRLTQQSELE
        SWR K+ +S  DDCTVVCLFL  + +  E S   +K   ++  +E
Subjt:  SWRGKFSSSNIDDCTVVCLFLDSNLMVSETSLKPRKRLTQQSELE
AT1G79630.2 Protein phosphatase 2C family protein2.7e-0442.22Show/hide
Query:  SWRGKFSSSNIDDCTVVCLFLDSNLMVSETSLKPRKRLTQQSELE
        SWR K+ +S  DDCTVVCLFL  + +  E S   +K   ++  +E
Subjt:  SWRGKFSSSNIDDCTVVCLFLDSNLMVSETSLKPRKRLTQQSELE
AT1G79630.3 Protein phosphatase 2C family protein2.7e-0442.22Show/hide
Query:  SWRGKFSSSNIDDCTVVCLFLDSNLMVSETSLKPRKRLTQQSELE
        SWR K+ +S  DDCTVVCLFL  + +  E S   +K   ++  +E
Subjt:  SWRGKFSSSNIDDCTVVCLFLDSNLMVSETSLKPRKRLTQQSELE
AT5G36250.1 Protein phosphatase 2C family protein3.6e-0469.57Show/hide
Query:  SWRGKFSSSNIDDCTVVCLFLDS
        +WR KF +S +DDC VVCLFLDS
Subjt:  SWRGKFSSSNIDDCTVVCLFLDS
AT5G51200.1 Protein of unknown function (DUF3414)3.8e-0645Show/hide
Query:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQ-VKDVLGNPSSS
        +VGLV +L+K + A+SL+EDYA+ LE R ++   +EN+ DD  VLI+Q + D +  P+ S
Subjt:  MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQ-VKDVLGNPSSS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGGCTAGTGCAGTTACTACTAAAATCTAATATTGCAAGCTCTTTAGTCGAGGATTATGCATCCTACCTTGAGTTAAGATCTAAAGATAGTCATGCAATAGAAAA
CAATAGAGATGATCCTAGTGTTCTTATAGTGCAGGTAAAGGATGTACTTGGAAATCCTTCATCTTCTCAAAAGGGTGGGATCTATTGCTATTTAGCTAGTGATCACCTGA
TTGACCTTTACTTCCTTTCATTGTGGGATCTGCCCGTGCTCCTTCTGCAGCTCGATCATTGGTCGTGGAGAGGCAAGTTTTCTTCTTCCAACATTGATGATTGCACTGTT
GTGTGCCTCTTCCTCGACTCGAACTTGATGGTGTCGGAGACAAGCTTAAAGCCAAGGAAGAGGTTAACTCAGCAATCCGAGCTGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGGCTAGTGCAGTTACTACTAAAATCTAATATTGCAAGCTCTTTAGTCGAGGATTATGCATCCTACCTTGAGTTAAGATCTAAAGATAGTCATGCAATAGAAAA
CAATAGAGATGATCCTAGTGTTCTTATAGTGCAGGTAAAGGATGTACTTGGAAATCCTTCATCTTCTCAAAAGGGTGGGATCTATTGCTATTTAGCTAGTGATCACCTGA
TTGACCTTTACTTCCTTTCATTGTGGGATCTGCCCGTGCTCCTTCTGCAGCTCGATCATTGGTCGTGGAGAGGCAAGTTTTCTTCTTCCAACATTGATGATTGCACTGTT
GTGTGCCTCTTCCTCGACTCGAACTTGATGGTGTCGGAGACAAGCTTAAAGCCAAGGAAGAGGTTAACTCAGCAATCCGAGCTGGAGTGA
Protein sequenceShow/hide protein sequence
MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQVKDVLGNPSSSQKGGIYCYLASDHLIDLYFLSLWDLPVLLLQLDHWSWRGKFSSSNIDDCTV
VCLFLDSNLMVSETSLKPRKRLTQQSELE