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Sed0006497 (gene) of Chayote v1 genome

Gene IDSed0006497
OrganismSechium edule (Chayote v1)
DescriptionSHSP domain-containing protein
Genome locationLG10:34519346..34520498
RNA-Seq ExpressionSed0006497
SyntenySed0006497
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR002068 - Alpha crystallin/Hsp20 domain
IPR008978 - HSP20-like chaperone
IPR045045 - Small heat shock protein RTM2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607636.1 hypothetical protein SDJN03_00978, partial [Cucurbita argyrosperma subsp. sororia]9.9e-4371.64Show/hide
Query:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK
        + GF RD+IV+TINGSGT IEI+WGQPVQ+MEITRWTYKKETET RFKKIFRIPDGV LDEIKATYND++SILKILMPKL+ GILGVGI+ VKE +E G+
Subjt:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK

Query:  AAFESQDCEAEEIPKM-------NGNKKTKMKED
        A FESQD EAE IP            K+TK+ ED
Subjt:  AAFESQDCEAEEIPKM-------NGNKKTKMKED

XP_022143634.1 uncharacterized protein LOC111013495 [Momordica charantia]2.2e-4272.18Show/hide
Query:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK
        + GF+R++I ITING+GT IEI WGQPVQRMEITRW YKKETET RFKKIFRIPDGV LDEIKATYND+ESILKI+MPKL +GILGVGIE VKEQ +VG+
Subjt:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK

Query:  AAFESQDCEAEEIPKM----NGNKKTKMKEDDA
         A ESQD EAEEIP++       ++TK  ED A
Subjt:  AAFESQDCEAEEIPKM----NGNKKTKMKEDDA

XP_022926215.1 neurofilament medium polypeptide-like [Cucurbita moschata]7.6e-4372.39Show/hide
Query:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK
        + GF RD+IVITINGSGT IEI+WGQPVQ+MEITRWTYKKETET RFKKIFRIPDGV LDEIKATYND++SILKILMPKL+ GILGVGI+ VKE +E G+
Subjt:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK

Query:  AAFESQDCEAEEIPKM-------NGNKKTKMKED
        A FESQD EAE IP            K+TK+ ED
Subjt:  AAFESQDCEAEEIPKM-------NGNKKTKMKED

XP_022981685.1 uncharacterized protein LOC111480753 [Cucurbita maxima]2.0e-4374.63Show/hide
Query:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK
        + GF RD+IVITINGSGT+IEI+WGQPVQ+MEITR TYKKETET RFKKIFRIPDGV LDEIKATYND++SILKILMPKL  GILGVGIEGVKEQ E G 
Subjt:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK

Query:  AAFESQDCEAEEIPKM-------NGNKKTKMKED
        A FESQD EAE IP            KKTK+ ED
Subjt:  AAFESQDCEAEEIPKM-------NGNKKTKMKED

XP_023521223.1 neurofilament medium polypeptide-like [Cucurbita pepo subsp. pepo]6.8e-4473.88Show/hide
Query:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK
        + GF RD+IVITINGSGT IEI+WGQPVQ+MEITRWTYKKETET RFKKIFRIPDGV LDEIKATYND++SILKILMPKL+ GILGVGI+ VKEQ E GK
Subjt:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK

Query:  AAFESQDCEAEEIPKM-------NGNKKTKMKED
        A FESQD EAE IP            K+TK+ ED
Subjt:  AAFESQDCEAEEIPKM-------NGNKKTKMKED

TrEMBL top hitse value%identityAlignment
A0A200QYB7 Alpha crystallin/Hsp20 domain1.1e-2053.06Show/hide
Query:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWT-YKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEE
        + G+ R+ I I I+  GT+I ++  + +Q M + RWT YKKE E  RFKK+FRIPDGV LD+IKA +N++++IL I MPKLK GI G+GIE VKE+++
Subjt:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWT-YKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEE

A0A6J1CPW6 uncharacterized protein LOC1110134951.1e-4272.18Show/hide
Query:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK
        + GF+R++I ITING+GT IEI WGQPVQRMEITRW YKKETET RFKKIFRIPDGV LDEIKATYND+ESILKI+MPKL +GILGVGIE VKEQ +VG+
Subjt:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK

Query:  AAFESQDCEAEEIPKM----NGNKKTKMKEDDA
         A ESQD EAEEIP++       ++TK  ED A
Subjt:  AAFESQDCEAEEIPKM----NGNKKTKMKEDDA

A0A6J1EKH3 neurofilament medium polypeptide-like3.7e-4372.39Show/hide
Query:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK
        + GF RD+IVITINGSGT IEI+WGQPVQ+MEITRWTYKKETET RFKKIFRIPDGV LDEIKATYND++SILKILMPKL+ GILGVGI+ VKE +E G+
Subjt:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK

Query:  AAFESQDCEAEEIPKM-------NGNKKTKMKED
        A FESQD EAE IP            K+TK+ ED
Subjt:  AAFESQDCEAEEIPKM-------NGNKKTKMKED

A0A6J1J0B1 uncharacterized protein LOC1114807539.6e-4474.63Show/hide
Query:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK
        + GF RD+IVITINGSGT+IEI+WGQPVQ+MEITR TYKKETET RFKKIFRIPDGV LDEIKATYND++SILKILMPKL  GILGVGIEGVKEQ E G 
Subjt:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGK

Query:  AAFESQDCEAEEIPKM-------NGNKKTKMKED
        A FESQD EAE IP            KKTK+ ED
Subjt:  AAFESQDCEAEEIPKM-------NGNKKTKMKED

A0A6J5Y091 SHSP domain-containing protein9.7e-2043.75Show/hide
Query:  TYIRPIAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRW-TYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKE
        TY+RP  G+ R  I I IN  GT+I I+  +PVQ   + RW  YKKE E   F+K+FRIPDGV LD IKA + ++ES L I+MPK + GI  VGIE VK+
Subjt:  TYIRPIAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRW-TYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKE

Query:  Q-EEVGKAAFESQDCEAEEIPKMNGNK-KTKMKEDDAVYEDFEE
           + G    +     AEE+P+ +G+  K +++  +A  +  EE
Subjt:  Q-EEVGKAAFESQDCEAEEIPKMNGNK-KTKMKEDDAVYEDFEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G76770.1 HSP20-like chaperones superfamily protein2.4e-1839.55Show/hide
Query:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWT-YKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVG
        + GF +D I I IN  G  I+I+  + V+ M + +W  +KKETE   FKK+FRIPD V LD+IKA +N+++  L + MPK   GI G+ IE   E+EE+ 
Subjt:  IAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWT-YKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVG

Query:  KAAFESQDCEAEEIPKMNGNKKTKMKEDDAVYED
        +   E +  E  E P+    ++TK +E++   E+
Subjt:  KAAFESQDCEAEEIPKMNGNKKTKMKEDDAVYED

AT1G76780.1 HSP20-like chaperones superfamily protein8.1e-1137.38Show/hide
Query:  MEITRW-TYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGKAAFESQDCEAEEIPKMNGNKKTKMKEDDA
        M + RW  ++KE E   FKK+FRIPD V LD+IKA ++D ++ L I MPK   GI G  IE  +E+EE  +   +  + E +E  +    K   +++   
Subjt:  MEITRW-TYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVGIEGVKEQEEVGKAAFESQDCEAEEIPKMNGNKKTKMKEDDA

Query:  VYEDFEE
        + E  EE
Subjt:  VYEDFEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAACTGTAGCTTCCCGCCAAGGCAACTGTGACCAAGCGTCTCCTTCAACCTATATACGTCCTATTGCAGGGTTTACAAGAGATGAGATTGTAATAACGATTAATGG
TAGCGGTACCGAGATCGAGATTGCTTGGGGACAACCTGTTCAAAGAATGGAGATTACACGATGGACGTACAAGAAAGAAACAGAGACATGGAGGTTCAAGAAGATCTTTC
GAATTCCAGATGGTGTGGCTTTGGACGAAATCAAGGCAACGTACAACGACAAAGAATCGATTTTGAAGATTCTGATGCCCAAATTGAAGAATGGAATCCTAGGAGTAGGA
ATTGAAGGAGTGAAGGAACAGGAGGAAGTTGGCAAAGCAGCATTTGAATCTCAGGATTGTGAAGCTGAGGAGATTCCTAAAATGAATGGCAACAAGAAGACCAAAATGAA
AGAAGATGATGCTGTATATGAAGACTTTGAAGAATTAACGCTTAACATGAAGCATTTCCTAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAACTGTAGCTTCCCGCCAAGGCAACTGTGACCAAGCGTCTCCTTCAACCTATATACGTCCTATTGCAGGGTTTACAAGAGATGAGATTGTAATAACGATTAATGG
TAGCGGTACCGAGATCGAGATTGCTTGGGGACAACCTGTTCAAAGAATGGAGATTACACGATGGACGTACAAGAAAGAAACAGAGACATGGAGGTTCAAGAAGATCTTTC
GAATTCCAGATGGTGTGGCTTTGGACGAAATCAAGGCAACGTACAACGACAAAGAATCGATTTTGAAGATTCTGATGCCCAAATTGAAGAATGGAATCCTAGGAGTAGGA
ATTGAAGGAGTGAAGGAACAGGAGGAAGTTGGCAAAGCAGCATTTGAATCTCAGGATTGTGAAGCTGAGGAGATTCCTAAAATGAATGGCAACAAGAAGACCAAAATGAA
AGAAGATGATGCTGTATATGAAGACTTTGAAGAATTAACGCTTAACATGAAGCATTTCCTAAGATAG
Protein sequenceShow/hide protein sequence
MGTVASRQGNCDQASPSTYIRPIAGFTRDEIVITINGSGTEIEIAWGQPVQRMEITRWTYKKETETWRFKKIFRIPDGVALDEIKATYNDKESILKILMPKLKNGILGVG
IEGVKEQEEVGKAAFESQDCEAEEIPKMNGNKKTKMKEDDAVYEDFEELTLNMKHFLR