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Sed0006533 (gene) of Chayote v1 genome

Gene IDSed0006533
OrganismSechium edule (Chayote v1)
DescriptionActin-related protein 2/3 complex subunit 4
Genome locationLG04:35229386..35235084
RNA-Seq ExpressionSed0006533
SyntenySed0006533
Gene Ontology termsGO:0030833 - regulation of actin filament polymerization (biological process)
GO:0034314 - Arp2/3 complex-mediated actin nucleation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005885 - Arp2/3 protein complex (cellular component)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR008384 - Actin-related protein 2/3 complex subunit 4
IPR034666 - Arp2/3 complex subunit 2/4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8527916.1 hypothetical protein F0562_035215 [Nyssa sinensis]6.2e-3296.05Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        MANTLRLYLTC RNTLEAAMCLQNFPCQEVERHNKPEVELKTS+ELLLNPVLICRNE+EKCLIETSINSLRISLKV
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

KAF4349616.1 hypothetical protein F8388_003800 [Cannabis sativa]2.8e-3297.37Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        MANTLRLYLTC RNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNE+EKCLIETSINSLRISLKV
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

XP_008456149.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo]8.1e-3296.05Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        MA TLRLYLTC RNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNP+LICRNESEKCLIETSINSLRISLKV
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

XP_020166925.1 actin-related protein 2/3 complex subunit 4 [Aegilops tauschii subsp. strangulata]6.2e-3294.74Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        MANTLRLYLTC RNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNE+EKCL+ETSINS+RISLKV
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

XP_030507540.1 actin-related protein 2/3 complex subunit 4 [Cannabis sativa]2.8e-3297.37Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        MANTLRLYLTC RNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNE+EKCLIETSINSLRISLKV
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

TrEMBL top hitse value%identityAlignment
A0A453MHU6 Uncharacterized protein2.3e-3293.51Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKVM
        MANTLRLYLTC RNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNE+EKCL+ETSINS+RISLKV+
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKVM

A0A453MI52 Uncharacterized protein3.0e-3294.74Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        MANTLRLYLTC RNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNE+EKCL+ETSINS+RISLKV
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

A0A453MI55 Uncharacterized protein2.3e-3293.51Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKVM
        MANTLRLYLTC RNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNE+EKCL+ETSINS+RISLKV+
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKVM

A0A7J6DUD8 Actin-related protein 2/3 complex subunit 41.3e-3297.37Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        MANTLRLYLTC RNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNE+EKCLIETSINSLRISLKV
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

N1QVT5 Actin-related protein 2/3 complex subunit 43.0e-3294.74Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        MANTLRLYLTC RNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNE+EKCL+ETSINS+RISLKV
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

SwissProt top hitse value%identityAlignment
F4JUL9 Actin-related protein 2/3 complex subunit 43.4e-3392.11Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        MAN+LRLYL C +NTLEAAMCLQNFPCQEVERHNKPEVELKTS ELLLNPVLICRNE+EKCLIETSINSLRISLKV
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

O96625 Actin-related protein 2/3 complex subunit 43.9e-2171.01Show/hide
Query:  YLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        YL C RNTL A+MCLQNF  Q VERHNKPEVE+KTS EL+LNPV+I RN++E+ LIETSINS+RIS+ +
Subjt:  YLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

P59998 Actin-related protein 2/3 complex subunit 43.7e-1964.47Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        M  TLR YL+  R TL+AA+CL+NF  Q VERHNKPEVE+++S ELLL PV I RNE EK LIE SINS+R+S+ V
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

Q148J6 Actin-related protein 2/3 complex subunit 43.7e-1964.47Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        M  TLR YL+  R TL+AA+CL+NF  Q VERHNKPEVE+++S ELLL PV I RNE EK LIE SINS+R+S+ V
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

Q641G7 Actin-related protein 2/3 complex subunit 42.8e-1964.47Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        M  TLR YL   R TL+AA+CL+NF  Q VERHNKPEVE+++S ELLL PV+I RNE EK LIE SINS+R+S+ V
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

Arabidopsis top hitse value%identityAlignment
AT4G14147.1 protein binding2.4e-3492.11Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        MAN+LRLYL C +NTLEAAMCLQNFPCQEVERHNKPEVELKTS ELLLNPVLICRNE+EKCLIETSINSLRISLKV
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV

AT4G14147.2 protein binding2.4e-3492.11Show/hide
Query:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV
        MAN+LRLYL C +NTLEAAMCLQNFPCQEVERHNKPEVELKTS ELLLNPVLICRNE+EKCLIETSINSLRISLKV
Subjt:  MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAATACTTTACGCTTGTATTTGACGTGCACACGGAACACTCTTGAAGCCGCGATGTGTCTTCAGAACTTTCCTTGCCAAGAAGTTGAAAGACATAACAAGCCGGA
GGTCGAACTAAAGACCAGCTCGGAACTTCTTCTCAATCCTGTCTTAATATGTCGAAATGAGTCAGAGAAGTGTTTGATTGAGACGTCTATAAATTCACTTCGCATCAGTC
TCAAGGTGATGGGTTGA
mRNA sequenceShow/hide mRNA sequence
CCACCCTTTTCTTCTCAATAACAATTTCATATTCTCTCAATCTATTAACATCAAATAATAGGGATTTAGATATAAATTTTGAAACCATCAAATCAAATTCTAAATTTTTC
TAACCTAAATAGACTGAACTTTAACTTTTAAAATGCTTTTCTACTGCGTCGGATATTTGGAACTCTGGGCTGAGCACACCAATAATCCCGTACTCGCAACCTCACTGCAC
AATTCAATCAATATATATTTTTTTTTTCCATCCAAATTTTCACTTCAGCGCGAGGATTTTGATCTCCAGAAACTACTCTCTTGAATTCAGAAATGGCAAATACTTTACGC
TTGTATTTGACGTGCACACGGAACACTCTTGAAGCCGCGATGTGTCTTCAGAACTTTCCTTGCCAAGAAGTTGAAAGACATAACAAGCCGGAGGTCGAACTAAAGACCAG
CTCGGAACTTCTTCTCAATCCTGTCTTAATATGTCGAAATGAGTCAGAGAAGTGTTTGATTGAGACGTCTATAAATTCACTTCGCATCAGTCTCAAGGTGATGGGTTGAA
GACAAATTTGGATGTATTTTGTTTCCATGTTTTGCCGTTGCTGATTAGGTGACAAAGAGATAGGTGTACTCAAGTCATGTGGGTCCTTTTAACTGCTTTAAAAAGTGCTC
CTTTGAATTGAAGCTAGTTGCCTAGTTCTTAGGGATTTTCTCATGGATTGAGTTAAATTCTTAACTTTGGAGTCGGTATTTGGATTAGCTACAAGAACCACTAGGCTATG
CATATGCATGTGTAAAAGGTCGTTTTGTATTATTGGTTTTTGGTCATCTTTTTTAACACAGAGTCAGGTTTTCCCAGAAGATTTAACTTCAACTTCAACTTTCATTGGGA
TTATAATTTATTTGAGCCTTGAGGTCTAGGCTATCTGGGTTTTGTAGTTTTATTTTTTGAGCAGTTTTCCATTCTCCATATGTTTACTGTGTATCCTTGGATTCTCTTCG
TGTAAACATTTGATTTTAATTTTTTAAAACTTTAACAGGGTAGTTGTTGTCTTGTAGAAGGTGTTATATTTATGGTTACAATTACAGCACAAATCAAAACTCAACCTTGT
AGAAATATGTACGGCCATTAGTTACTCTCCATCTAGACGAGGCCTAGGCCATTAGTTGTACCTGAAGAAAAAACTAGTGAGTGTATGAGATTATCATCACAAATTAATAT
CACCTGAAA
Protein sequenceShow/hide protein sequence
MANTLRLYLTCTRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNESEKCLIETSINSLRISLKVMG