; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0006550 (gene) of Chayote v1 genome

Gene IDSed0006550
OrganismSechium edule (Chayote v1)
Descriptionexosome complex exonuclease RRP46 homolog
Genome locationLG03:9473100..9476011
RNA-Seq ExpressionSed0006550
SyntenySed0006550
Gene Ontology termsGO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0006259 - DNA metabolic process (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0004540 - ribonuclease activity (molecular function)
GO:0004536 - deoxyribonuclease activity (molecular function)
GO:0004527 - exonuclease activity (molecular function)
GO:0042802 - identical protein binding (molecular function)
GO:0003727 - single-stranded RNA binding (molecular function)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150286.1 exosome complex exonuclease RRP46 homolog [Cucumis sativus]3.7e-12392.59Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERE EMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPT++EE+KMKA VHLVFPN+PVSV+PEGSTQ  GEP+EHGIITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
        QGAM VDDYI CLERGRAAT K+SAFLRRSLQPQLP +SSKAG
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

XP_022951618.1 exosome complex exonuclease RRP46 homolog [Cucurbita moschata]5.1e-12594.24Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERE EMILKRTLQSICILT+NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPT+LEEQKMKA VHLVFPNSPVSVIPEGSTQVAGEP+E+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
        QGAM VDDYI CLERGRAATAK+SAFLRRSLQPQLPTDSSK G
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

XP_023002484.1 exosome complex exonuclease RRP46 homolog [Cucurbita maxima]1.5e-12493.83Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERE EMILKRTLQSICILT+NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPT+LEEQKMKA VHLVFPNSPVSVIPEGSTQV GEP+E+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
        QGAM VDDYI CLERGRAATAK+SAFLRRSLQPQLPTDSSK G
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

XP_023538111.1 exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo]5.7e-12493.42Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        ME+DRDDGRT NQLRPLACSCNVLNRA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERE EMILKRTLQSICILT+NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPT+LEEQKMKA VHLVFPNSPVSVIPEGSTQVAGEP+E+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
        QGAM VDDYI CLERGRAATAK+SAFLRRSLQPQLPTDSSK G
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

XP_038885208.1 exosome complex exonuclease RRP46 homolog [Benincasa hispida]1.3e-12393.83Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERE EMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPT+LEEQKMKA VHLVFPNSPVSV+PEGS QV  EP+EHGIITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
        QG+M VDDYI CLERG AA+AK+SAFLRRSLQPQLPTDSSKAG
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

TrEMBL top hitse value%identityAlignment
A0A0A0LLJ9 Uncharacterized protein1.8e-12392.59Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERE EMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPT++EE+KMKA VHLVFPN+PVSV+PEGSTQ  GEP+EHGIITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
        QGAM VDDYI CLERGRAAT K+SAFLRRSLQPQLP +SSKAG
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

A0A1S3BB90 exosome complex exonuclease RRP46 homolog8.8e-12392.18Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERE EMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPT++EE+KMKA VHLVFPN+PVSV+PEGSTQ  GEP+EHG+ITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
        QGAM VDDYI CLERGRAAT K+SAFLRRSLQPQL  DSSKAG
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

A0A5A7VGL5 Exosome complex exonuclease RRP46-like protein8.8e-12392.18Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERE EMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPT++EE+KMKA VHLVFPN+PVSV+PEGSTQ  GEP+EHG+ITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
        QGAM VDDYI CLERGRAAT K+SAFLRRSLQPQL  DSSKAG
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

A0A6J1GI69 exosome complex exonuclease RRP46 homolog2.5e-12594.24Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERE EMILKRTLQSICILT+NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPT+LEEQKMKA VHLVFPNSPVSVIPEGSTQVAGEP+E+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
        QGAM VDDYI CLERGRAATAK+SAFLRRSLQPQLPTDSSK G
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

A0A6J1KQK5 exosome complex exonuclease RRP46 homolog7.2e-12593.83Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERE EMILKRTLQSICILT+NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPT+LEEQKMKA VHLVFPNSPVSVIPEGSTQV GEP+E+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
        QGAM VDDYI CLERGRAATAK+SAFLRRSLQPQLPTDSSK G
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

SwissProt top hitse value%identityAlignment
Q84T68 Exosome complex exonuclease RRP46 homolog3.6e-8164.71Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        ME  R DGR PNQLRP +C+ N L+RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT++PNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTS+I+QV+ +DG+LLPCAINA CAALV AGIPLKHLAVAI C + E G VILD  + EEQ++K+  HLVFPNS  S   +   Q   E  E G+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTD
         G M  +DY  C+ERG AA+++IS F+R +LQ Q P D
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTD

Q9CRA8 Exosome complex component RRP469.6e-3436.53Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDG
        LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ +  ++P T+ ++++QV+ D G
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDG

Query:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCL
        +LL C +NA+C ALVDAG+P++ L   ++C L   G ++LDPT  +E++ +A++                   A +  E  ++ S T+G     +  QCL
Subjt:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCL

Query:  ERGRAATAKISAFLRRSLQ
           +AA+  I  F R SLQ
Subjt:  ERGRAATAKISAFLRRSLQ

Q9LX74 Exosome complex exonuclease RRP46 homolog1.2e-10374.9Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP +LEE+KM A  +LVFPN+ +SV+PEGS+   GEPVEHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
         G M VDDY  C+E GRAATA +SAF R++ Q      SSKAG
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

Q9NQT4 Exosome complex component RRP468.7e-3537.44Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDG
        LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ + T++P T+ ++++QV+ D G
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDG

Query:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCL
        +LL C +NA+C ALVDAG+P++ L   ++C L   G ++LDPT  +E++ +AV+                   A + VE  ++ S T+G     +  QCL
Subjt:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCL

Query:  ERGRAATAKISAFLRRSLQ
           +AA+  +  F R SLQ
Subjt:  ERGRAATAKISAFLRRSLQ

Q9SP08 Exosome complex component RRP41 homolog1.7e-1431.76Show/hide
Query:  RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLER----------ESEMILKRTLQSICIL
        R DGR  N++R +     V+++A GSA +  G+TKV+AAVYGP+    K++  +     V+ +    Q    +R          E  +++++T+++  + 
Subjt:  RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLER----------ESEMILKRTLQSICIL

Query:  TMNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAIS
         + P++   I +QV+  DG      INA+  AL DAGIP++ LAV+ S
Subjt:  TMNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAIS

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein8.2e-10574.9Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP +LEE+KM A  +LVFPN+ +SV+PEGS+   GEPVEHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
         G M VDDY  C+E GRAATA +SAF R++ Q      SSKAG
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein8.2e-10574.9Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP +LEE+KM A  +LVFPN+ +SV+PEGS+   GEPVEHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
         G M VDDY  C+E GRAATA +SAF R++ Q      SSKAG
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

AT3G46210.3 Ribosomal protein S5 domain 2-like superfamily protein8.2e-10574.9Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP +LEE+KM A  +LVFPN+ +SV+PEGS+   GEPVEHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
         G M VDDY  C+E GRAATA +SAF R++ Q      SSKAG
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

AT3G46210.4 Ribosomal protein S5 domain 2-like superfamily protein8.2e-10574.9Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP +LEE+KM A  +LVFPN+ +SV+PEGS+   GEPVEHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
         G M VDDY  C+E GRAATA +SAF R++ Q      SSKAG
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

AT3G46210.5 Ribosomal protein S5 domain 2-like superfamily protein8.2e-10574.9Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP +LEE+KM A  +LVFPN+ +SV+PEGS+   GEPVEHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVT

Query:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG
         G M VDDY  C+E GRAATA +SAF R++ Q      SSKAG
Subjt:  QGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATCGACAGAGACGACGGCCGCACCCCCAACCAGTTGAGACCACTTGCCTGTTCTTGCAATGTTCTCAACCGTGCTCATGGCTCCGCCAGTTGGTCGCAAGGCGA
TACCAAAGTTCTTGCTGCGGTGTATGGACCTAAAGCGGGAACAAAGAAGAACGAAAATCCTGAGAAGGCTTCGATTGAGGTTATATGGAAACCCAAGACTGGGCAGATTG
GAAAACTGGAAAGGGAGTCTGAGATGATATTGAAGAGGACATTACAGAGTATTTGCATATTAACTATGAATCCCAATACCACCACATCTATTATTGTTCAGGTTATTCAC
GATGATGGAGCTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTCCTGTTGTTTGTCTGA
GAGTGGATATGTTATTTTGGATCCAACCAGGCTAGAGGAGCAGAAAATGAAGGCAGTTGTACATTTGGTCTTTCCAAACTCACCTGTTTCGGTAATTCCGGAAGGATCTA
CACAAGTTGCGGGTGAACCTGTAGAGCATGGGATAATAACATCTGTAACTCAAGGTGCAATGGAAGTGGATGATTATATTCAATGCCTGGAACGAGGGCGTGCTGCAACT
GCCAAAATTTCTGCTTTTTTGAGAAGAAGCTTGCAGCCCCAACTCCCAACGGATTCGTCAAAAGCGGGATGA
mRNA sequenceShow/hide mRNA sequence
ACAGTTTTGCCCTAGGGTCTTCTTCTCCTTCTCCAAGTATAATAAGACCCGGCGGCGGCGGCGCCGCCTTTAAAACCTCTCCGGCTCTCACTGTTCTCTTCTACGCTCAA
TCGCGAGGTAGAAACTGAGTTTCAATTCATTCAAAAACTGCAAATCGAACCGTTACATCTTCAATTTCTTTCTAATCTTTCGAAACCACCGAAGAACGATCATGGAGATC
GACAGAGACGACGGCCGCACCCCCAACCAGTTGAGACCACTTGCCTGTTCTTGCAATGTTCTCAACCGTGCTCATGGCTCCGCCAGTTGGTCGCAAGGCGATACCAAAGT
TCTTGCTGCGGTGTATGGACCTAAAGCGGGAACAAAGAAGAACGAAAATCCTGAGAAGGCTTCGATTGAGGTTATATGGAAACCCAAGACTGGGCAGATTGGAAAACTGG
AAAGGGAGTCTGAGATGATATTGAAGAGGACATTACAGAGTATTTGCATATTAACTATGAATCCCAATACCACCACATCTATTATTGTTCAGGTTATTCACGATGATGGA
GCTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTCCTGTTGTTTGTCTGAGAGTGGATA
TGTTATTTTGGATCCAACCAGGCTAGAGGAGCAGAAAATGAAGGCAGTTGTACATTTGGTCTTTCCAAACTCACCTGTTTCGGTAATTCCGGAAGGATCTACACAAGTTG
CGGGTGAACCTGTAGAGCATGGGATAATAACATCTGTAACTCAAGGTGCAATGGAAGTGGATGATTATATTCAATGCCTGGAACGAGGGCGTGCTGCAACTGCCAAAATT
TCTGCTTTTTTGAGAAGAAGCTTGCAGCCCCAACTCCCAACGGATTCGTCAAAAGCGGGATGATCGGTTGCAATTTCTTTCCTATGTATTGTTCTCAACTACTTAATCTG
GCTGGGAAGGTATCAATCTCTATTGTATGATTTATTTTTGTGTAATCCCAAATTCATGGTAGATGTGCATTTCAGGAACCAGAGCTGTAACAGAGCATTGATTTAAATGA
TGATAAATCTTTCATAGTGGATTTGACTGATGC
Protein sequenceShow/hide protein sequence
MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIH
DDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAAT
AKISAFLRRSLQPQLPTDSSKAG