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Sed0006589 (gene) of Chayote v1 genome

Gene IDSed0006589
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG01:9769899..9770819
RNA-Seq ExpressionSed0006589
SyntenySed0006589
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8817564.1 hypothetical protein D1007_04663 [Hordeum vulgare]3.5e-1431.18Show/hide
Query:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDCKSVEERGAGSLVYGGWLRAEASNPGVR
        +GE ++V++ +++R +G  LR+KVRIDI+K L RG+ ++ G   ++ W    YE LP FC+ CG IGH  K+C     RG     YG WLRA      V 
Subjt:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDCKSVEERGAGSLVYGGWLRAEASNPGVR

Query:  STSNQENERATRNKEDYKREKERTERRWEDHEKGRNEETMGLRATFGRGRGRVGMGPRSGWGKNLRDEYEGWGISEQKIFREREED
        S +                      RRW +   G++  + G+        GR G   +S W K+  +  +G G S  +   ++ ED
Subjt:  STSNQENERATRNKEDYKREKERTERRWEDHEKGRNEETMGLRATFGRGRGRVGMGPRSGWGKNLRDEYEGWGISEQKIFREREED

TXG54199.1 hypothetical protein EZV62_019455 [Acer yangbiense]1.6e-1447Show/hide
Query:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDC---KSVEERGAGSLV-YGGWLRAEASN
        IGE +++   E+  C GR LR+KVRIDISK LKR + +K+G   E     L YE++P FCF CGR+GHG K+C   K++++   GS++ YG WL+A  S+
Subjt:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDC---KSVEERGAGSLV-YGGWLRAEASN

TXG63385.1 hypothetical protein EZV62_010379 [Acer yangbiense]2.3e-1344.79Show/hide
Query:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDCKSVEERGA----GSLVYGGWLRA
        IGE +++   E+  CRG+ +R+KVRIDISK+LKR + +K+    E     L YE+LP FCF CG+IGH  ++C+  E R A        YG WL+A
Subjt:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDCKSVEERGA----GSLVYGGWLRA

XP_023909376.1 uncharacterized protein At4g02000-like [Quercus suber]1.8e-1345.26Show/hide
Query:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDC----KSVEERGAGSLVYGGWLR
        IG  LDVD+ EN    G+ LR++V+ID +K L RG  V +    E RW +  Y++LP FC+ CGR+ HG KDC      +   G G L YG WLR
Subjt:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDC----KSVEERGAGSLVYGGWLR

XP_030940140.1 uncharacterized protein LOC115965077 [Quercus lobata]1.3e-1341.35Show/hide
Query:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDCKSVEERGAG------SLVYGGWLRAEA
        +GE +DVD+ E+    G+ LR++V +D++K L RG  + +    E RW    YE+LP FC+ CG + HG KDCK  EE G+G      +L YG W+R E 
Subjt:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDCKSVEERGAG------SLVYGGWLRAEA

Query:  SNPG
           G
Subjt:  SNPG

TrEMBL top hitse value%identityAlignment
A0A2N9IPQ7 Uncharacterized protein3.2e-1340.52Show/hide
Query:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDC----KSVEERGAGSLVYGGWLRA-EAS
        IGE + VD+DE     G++LR++V+ID+ + L RG  VK+G   +  W Y  YEKLP FC+GCGRI HG   C    KS+  R +    +G WLRA E  
Subjt:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDC----KSVEERGAGSLVYGGWLRA-EAS

Query:  NPGVRSTSNQENERAT
         P  +  S     +++
Subjt:  NPGVRSTSNQENERAT

A0A5C7HBH6 CCHC-type domain-containing protein7.7e-1547Show/hide
Query:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDC---KSVEERGAGSLV-YGGWLRAEASN
        IGE +++   E+  C GR LR+KVRIDISK LKR + +K+G   E     L YE++P FCF CGR+GHG K+C   K++++   GS++ YG WL+A  S+
Subjt:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDC---KSVEERGAGSLV-YGGWLRAEASN

A0A5C7I2R5 CCHC-type domain-containing protein1.1e-1344.79Show/hide
Query:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDCKSVEERGA----GSLVYGGWLRA
        IGE +++   E+  CRG+ +R+KVRIDISK+LKR + +K+    E     L YE+LP FCF CG+IGH  ++C+  E R A        YG WL+A
Subjt:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDCKSVEERGA----GSLVYGGWLRA

A0A7N2MS75 CCHC-type domain-containing protein6.5e-1441.35Show/hide
Query:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDCKSVEERGAG------SLVYGGWLRAEA
        +GE +DVD+ E+    G+ LR++V +D++K L RG  + +    E RW    YE+LP FC+ CG + HG KDCK  EE G+G      +L YG W+R E 
Subjt:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDCKSVEERGAG------SLVYGGWLRAEA

Query:  SNPG
           G
Subjt:  SNPG

A0A7N2QWW0 CCHC-type domain-containing protein8.5e-1441.35Show/hide
Query:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDCKSVEERGAG------SLVYGGWLRAEA
        +GE +DVD+ E+    G+ LR++V +D++K L RG  + +    E RW    YE+LP FC+ CG + HG KDCK  EE G+G      +L YG W+R E 
Subjt:  IGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDCKSVEERGAG------SLVYGGWLRAEA

Query:  SNPG
           G
Subjt:  SNPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGGGAGTTTTTAGATGTTGACATTGATGAGAATAACAGATGTAGGGGCCGCACACTTCGAATTAAGGTGAGAATCGACATATCGAAATCTTTGAAGAGAGGGGT
GTATGTGAAGGTGGGTTCCATGGCAGAGGATCGCTGGTTCTATCTAGCGTATGAAAAGCTACCAGCGTTTTGTTTTGGCTGTGGTAGAATCGGTCATGGTACTAAAGATT
GCAAATCAGTGGAAGAAAGAGGGGCGGGTTCTCTAGTTTACGGTGGTTGGTTGAGAGCTGAGGCTAGCAATCCAGGAGTTCGAAGCACATCGAATCAGGAAAATGAAAGA
GCAACTCGGAACAAGGAGGATTATAAGAGGGAGAAAGAAAGAACTGAGAGGCGATGGGAGGACCACGAGAAAGGAAGGAATGAAGAAACGATGGGCTTGAGAGCCACATT
TGGGAGAGGGAGGGGGCGAGTTGGAATGGGTCCAAGGAGTGGTTGGGGGAAAAATTTGAGGGATGAATATGAGGGGTGGGGAATCTCAGAGCAGAAAATCTTCAGAGAAA
GGGAAGAAGATGGATTAAACTCGGAAGCTCGGAGTGTCGCTCATCCAGAAGGTGGTCATGAGCAGTCGTTGATCTCTAAAACAGGAAATGGAGGAGCTCAGCCGGATTTA
GGTGATCGGAAGGGGAAATCGATGGCTAAAGAGGAAGAGGCCGAATCACAACGGTCAATTGCTAGGAAGGCGGCTCAGTCGAGGTTGCAGAATCGTACAATGGGGACTGA
TAAGGGTCTGAACTCTGACTTTGCAGCAGGTTTTCGGGATGATAGCTCTGGAAAAGGAAAGAAGCAGGTGGTGTACTCAGGCCTAGGAGAGATATTGGGCTATGTTGAGC
CAGAGGGTGTTACTTGGGCCAGAGGTGTTGGATCAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGGGGAGTTTTTAGATGTTGACATTGATGAGAATAACAGATGTAGGGGCCGCACACTTCGAATTAAGGTGAGAATCGACATATCGAAATCTTTGAAGAGAGGGGT
GTATGTGAAGGTGGGTTCCATGGCAGAGGATCGCTGGTTCTATCTAGCGTATGAAAAGCTACCAGCGTTTTGTTTTGGCTGTGGTAGAATCGGTCATGGTACTAAAGATT
GCAAATCAGTGGAAGAAAGAGGGGCGGGTTCTCTAGTTTACGGTGGTTGGTTGAGAGCTGAGGCTAGCAATCCAGGAGTTCGAAGCACATCGAATCAGGAAAATGAAAGA
GCAACTCGGAACAAGGAGGATTATAAGAGGGAGAAAGAAAGAACTGAGAGGCGATGGGAGGACCACGAGAAAGGAAGGAATGAAGAAACGATGGGCTTGAGAGCCACATT
TGGGAGAGGGAGGGGGCGAGTTGGAATGGGTCCAAGGAGTGGTTGGGGGAAAAATTTGAGGGATGAATATGAGGGGTGGGGAATCTCAGAGCAGAAAATCTTCAGAGAAA
GGGAAGAAGATGGATTAAACTCGGAAGCTCGGAGTGTCGCTCATCCAGAAGGTGGTCATGAGCAGTCGTTGATCTCTAAAACAGGAAATGGAGGAGCTCAGCCGGATTTA
GGTGATCGGAAGGGGAAATCGATGGCTAAAGAGGAAGAGGCCGAATCACAACGGTCAATTGCTAGGAAGGCGGCTCAGTCGAGGTTGCAGAATCGTACAATGGGGACTGA
TAAGGGTCTGAACTCTGACTTTGCAGCAGGTTTTCGGGATGATAGCTCTGGAAAAGGAAAGAAGCAGGTGGTGTACTCAGGCCTAGGAGAGATATTGGGCTATGTTGAGC
CAGAGGGTGTTACTTGGGCCAGAGGTGTTGGATCAATTTAA
Protein sequenceShow/hide protein sequence
MIGEFLDVDIDENNRCRGRTLRIKVRIDISKSLKRGVYVKVGSMAEDRWFYLAYEKLPAFCFGCGRIGHGTKDCKSVEERGAGSLVYGGWLRAEASNPGVRSTSNQENER
ATRNKEDYKREKERTERRWEDHEKGRNEETMGLRATFGRGRGRVGMGPRSGWGKNLRDEYEGWGISEQKIFREREEDGLNSEARSVAHPEGGHEQSLISKTGNGGAQPDL
GDRKGKSMAKEEEAESQRSIARKAAQSRLQNRTMGTDKGLNSDFAAGFRDDSSGKGKKQVVYSGLGEILGYVEPEGVTWARGVGSI