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Sed0006602 (gene) of Chayote v1 genome

Gene IDSed0006602
OrganismSechium edule (Chayote v1)
Descriptionchaperonin-like RBCX protein 1, chloroplastic
Genome locationLG14:22144120..22146953
RNA-Seq ExpressionSed0006602
SyntenySed0006602
Gene Ontology termsGO:0006270 - DNA replication initiation (biological process)
GO:0009409 - response to cold (biological process)
GO:0009414 - response to water deprivation (biological process)
GO:0009651 - response to salt stress (biological process)
GO:0015977 - carbon fixation (biological process)
GO:0015979 - photosynthesis (biological process)
GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process)
GO:0033314 - mitotic DNA replication checkpoint (biological process)
GO:0061077 - chaperone-mediated protein folding (biological process)
GO:0005664 - nuclear origin of replication recognition complex (cellular component)
GO:0009534 - chloroplast thylakoid (cellular component)
GO:0044183 - protein folding chaperone (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0003688 - DNA replication origin binding (molecular function)
InterPro domainsIPR038052 - Chaperonin-like RbcX superfamily
IPR003435 - Chaperonin-like RbcX


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134778.1 chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]5.0e-7481.5Show/hide
Query:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH
        MESS RI+S   FPSLF LPNLNR N FPV P KP+  + +RLHC+KMYVPGFGEASPESKAA++LHNFFTYVAVR+V AQLESYN EA++ELMEF+D+H
Subjt:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH

Query:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK
        SL+DGDKFLASLMRES RHK LALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNT++MREY+TETSPSDTEK
Subjt:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK

XP_008440039.1 PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo]1.3e-7481.5Show/hide
Query:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH
        MESS RI+S   FPS+F LPNLNR N FPV P KP+ S+S+RLHC+KMYVPGFGEASPESKAA++LHNFFTYVAVR+V AQLESYN EA++ELMEF+D+H
Subjt:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH

Query:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK
        SL+DGDKFLASLMRES RHK LALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNT++MREY+TETSPSDTEK
Subjt:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK

XP_022132911.1 chaperonin-like RBCX protein 1, chloroplastic [Momordica charantia]1.5e-7381.14Show/hide
Query:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSR--SLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVD
        MESS R++S   FPSLFPLPNLNR+  FP+WP KPK S+   L+L C+KMYVPGFGEASPE+KAAK+LHNFFTYVAVR+VIAQLESYN EA VELMEF+D
Subjt:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSR--SLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVD

Query:  KHSLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK
        +HSL+DGDKFLASLMRES RHK LALRILEVRSAYCKNDFEWDNLKRLA KM SESNT+LMREYVTETSPS+TEK
Subjt:  KHSLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK

XP_023003335.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]5.0e-7482.08Show/hide
Query:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH
        MES  RI+S  HFPSLFPLPNLNR+N  PVWPKKP+ S+SLRLHC+KMYVPGFGEASPE+KAAK+LHNFFTYVAVR+V AQLESYN EA  ELMEF+D+H
Subjt:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH

Query:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK
        SL+DGDKFL++LMRES RHK LALRILEVRSAYCKNDFEWDNLKRLA KMV ESNT+LMREYVTETSP D EK
Subjt:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK

XP_038881664.1 chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]6.7e-7984.97Show/hide
Query:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH
        ME S RI+S   FPSLFPLPNLNR+N FPVWPKKPK ++S+RLHC+KMYVPGFGEASPESKAA++LHNFFTYVAVR+V AQLESYN EA+ ELMEF+D+H
Subjt:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH

Query:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK
        SL+DGDKFLASLMRES RHK LALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNT+LMREYVTETSPSDTEK
Subjt:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK

TrEMBL top hitse value%identityAlignment
A0A0A0KMZ4 Uncharacterized protein2.4e-7481.5Show/hide
Query:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH
        MESS RI+S   FPSLF LPNLNR N FPV P KP+  + +RLHC+KMYVPGFGEASPESKAA++LHNFFTYVAVR+V AQLESYN EA++ELMEF+D+H
Subjt:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH

Query:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK
        SL+DGDKFLASLMRES RHK LALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNT++MREY+TETSPSDTEK
Subjt:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK

A0A1S3B054 uncharacterized protein LOC1034846356.4e-7581.5Show/hide
Query:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH
        MESS RI+S   FPS+F LPNLNR N FPV P KP+ S+S+RLHC+KMYVPGFGEASPESKAA++LHNFFTYVAVR+V AQLESYN EA++ELMEF+D+H
Subjt:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH

Query:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK
        SL+DGDKFLASLMRES RHK LALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNT++MREY+TETSPSDTEK
Subjt:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK

A0A5D3CNU4 Chaperonin-like RBCX protein 16.4e-7581.5Show/hide
Query:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH
        MESS RI+S   FPS+F LPNLNR N FPV P KP+ S+S+RLHC+KMYVPGFGEASPESKAA++LHNFFTYVAVR+V AQLESYN EA++ELMEF+D+H
Subjt:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH

Query:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK
        SL+DGDKFLASLMRES RHK LALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNT++MREY+TETSPSDTEK
Subjt:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK

A0A6J1BTL5 chaperonin-like RBCX protein 1, chloroplastic7.0e-7481.14Show/hide
Query:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSR--SLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVD
        MESS R++S   FPSLFPLPNLNR+  FP+WP KPK S+   L+L C+KMYVPGFGEASPE+KAAK+LHNFFTYVAVR+VIAQLESYN EA VELMEF+D
Subjt:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSR--SLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVD

Query:  KHSLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK
        +HSL+DGDKFLASLMRES RHK LALRILEVRSAYCKNDFEWDNLKRLA KM SESNT+LMREYVTETSPS+TEK
Subjt:  KHSLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic2.4e-7482.08Show/hide
Query:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH
        MES  RI+S  HFPSLFPLPNLNR+N  PVWPKKP+ S+SLRLHC+KMYVPGFGEASPE+KAAK+LHNFFTYVAVR+V AQLESYN EA  ELMEF+D+H
Subjt:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH

Query:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK
        SL+DGDKFL++LMRES RHK LALRILEVRSAYCKNDFEWDNLKRLA KMV ESNT+LMREYVTETSP D EK
Subjt:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK

SwissProt top hitse value%identityAlignment
Q44177 RuBisCO chaperone RbcX5.7e-0429.73Show/hide
Query:  LHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKHSLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESN---TKLMREY
        L ++ TY AVR++  QL   N    + L EF  +H + + D +L ++M E   +K L LRIL VR    +   E+  L  +    + +SN    + + E 
Subjt:  LHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKHSLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESN---TKLMREY

Query:  VTETSPSDTEK
        +T+   S T++
Subjt:  VTETSPSDTEK

Q8DIS6 RuBisCO chaperone RbcX3.3e-0438.57Show/hide
Query:  KAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKHSLDDGDKFLASLMRESPRHKGLALRILEVR
        +  K L ++ TY AVR VI QL   +    + L +F  + S+ DG+++L +L RE P    L  RIL VR
Subjt:  KAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKHSLDDGDKFLASLMRESPRHKGLALRILEVR

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic1.1e-5262.21Show/hide
Query:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH
        MESS+ ++   +   L P        ++P+     K  ++ R+  NKMYVPGFGEASPE+KAAKHLH+FFTYVAVR+V AQLESYN EA++EL EF+D +
Subjt:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH

Query:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTE
        S+ DGDKF A+LMR S RH  LALRILEVRSAYCKNDFEWDN+KRLAFK V +SNT+LMREYV ETS  +T+
Subjt:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTE

Arabidopsis top hitse value%identityAlignment
AT4G04330.1 Chaperonin-like RbcX protein8.0e-5462.21Show/hide
Query:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH
        MESS+ ++   +   L P        ++P+     K  ++ R+  NKMYVPGFGEASPE+KAAKHLH+FFTYVAVR+V AQLESYN EA++EL EF+D +
Subjt:  MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKH

Query:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTE
        S+ DGDKF A+LMR S RH  LALRILEVRSAYCKNDFEWDN+KRLAFK V +SNT+LMREYV ETS  +T+
Subjt:  SLDDGDKFLASLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTE

AT5G19855.1 Chaperonin-like RbcX protein1.5e-0434.55Show/hide
Query:  KHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKHSLDDGDKFLASLMRESPRHKGLALRILEVR-SAYCKNDFEWDNLKRLAFKMVSESNTKLMREY
        K + N+FTY AVR V+ QL   N   +      +  +   DG +FL +L +ES   + LA R++  R   Y K   + D+ K   ++ +S+ N  LMRE 
Subjt:  KHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKHSLDDGDKFLASLMRESPRHKGLALRILEVR-SAYCKNDFEWDNLKRLAFKMVSESNTKLMREY

Query:  VTETS--PSD
        + ET   PSD
Subjt:  VTETS--PSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCATCCACAAGAATTATTTCCCTTCCTCATTTCCCTTCTCTTTTCCCACTTCCCAATTTAAACAGAACCAATAATTTTCCAGTTTGGCCAAAAAAGCCCAAAGT
TTCAAGGTCCTTGCGCTTGCACTGCAATAAGATGTATGTCCCTGGGTTTGGAGAAGCGTCACCAGAATCAAAGGCAGCCAAACACCTGCACAATTTCTTCACGTATGTTG
CTGTCAGGGTCGTGATTGCACAGCTTGAGAGTTATAATACAGAGGCGTTTGTAGAGTTGATGGAGTTTGTTGATAAGCATTCACTGGATGATGGAGACAAGTTTCTGGCC
AGTTTGATGCGGGAATCGCCGAGGCATAAGGGTCTTGCATTGCGCATTCTAGAGGTTCGATCTGCATACTGCAAAAACGATTTCGAGTGGGACAACCTCAAGCGATTAGC
CTTCAAAATGGTTAGTGAATCCAACACAAAGCTGATGAGAGAATACGTGACGGAGACTAGTCCATCGGATACCGAGAAGTGA
mRNA sequenceShow/hide mRNA sequence
AGATATTTGAAAAACTTGTGGGGATGCAAAAGATATTTTCAATTCCAACTCAAAAGACTTGGACCTGTTTCTTCTGGTTTTCCTTCCAAACCAGTTTGACAAAGCTCAAC
ATTATCAATGGAATCATCCACAAGAATTATTTCCCTTCCTCATTTCCCTTCTCTTTTCCCACTTCCCAATTTAAACAGAACCAATAATTTTCCAGTTTGGCCAAAAAAGC
CCAAAGTTTCAAGGTCCTTGCGCTTGCACTGCAATAAGATGTATGTCCCTGGGTTTGGAGAAGCGTCACCAGAATCAAAGGCAGCCAAACACCTGCACAATTTCTTCACG
TATGTTGCTGTCAGGGTCGTGATTGCACAGCTTGAGAGTTATAATACAGAGGCGTTTGTAGAGTTGATGGAGTTTGTTGATAAGCATTCACTGGATGATGGAGACAAGTT
TCTGGCCAGTTTGATGCGGGAATCGCCGAGGCATAAGGGTCTTGCATTGCGCATTCTAGAGGTTCGATCTGCATACTGCAAAAACGATTTCGAGTGGGACAACCTCAAGC
GATTAGCCTTCAAAATGGTTAGTGAATCCAACACAAAGCTGATGAGAGAATACGTGACGGAGACTAGTCCATCGGATACCGAGAAGTGACAAAATTCTTCACCCTCTCCT
TTTTGCTATTTATACAGGAGAGGATACATAAATGCAATGTTTATAGTATGATGAGAAAGTAAAACATTATGCAACCCGTTTGTCAAAGCTTTTACACCAAACAAGATTTG
GCAAATCCAATGATGGAAATATATACTGAGACATTCATTCTGAATTCTTTTTGCAAGCTATACAATATTTATCACAATCTAGATTACTAGAATGTTGCAGCTTCTAATTC
TAAATCAGCTCCAGTCTGAAAACAGATGAAAGAAATCAGATGAACTCAAGATGTGTAAGAACAAAAAGATGGGATGAATGAGAATACAATAGGTT
Protein sequenceShow/hide protein sequence
MESSTRIISLPHFPSLFPLPNLNRTNNFPVWPKKPKVSRSLRLHCNKMYVPGFGEASPESKAAKHLHNFFTYVAVRVVIAQLESYNTEAFVELMEFVDKHSLDDGDKFLA
SLMRESPRHKGLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTKLMREYVTETSPSDTEK