CuGenDBv2

Gene ID	Sed0006618
Organism	Sechium edule (Chayote v1)
Description	Sigma factor binding protein 1
Genome location	LG04:39059084..39059882
RNA-Seq Expression	Sed0006618
Synteny	Sed0006618
Gene Ontology terms	GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domains	IPR008889 - VQ IPR039335 - Sigma factor binding protein 1/2

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6573793.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

8.4e-35

64.1

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Query:  MDYTGRKKQSKSRSKKS-AGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSS---AAFLDHQLLADDGDLMTDRDRR
        MD T  KKQSK RS+KS A DFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELIAAAA++DR NL SS   +AFLD+QLL DD   +TD D R
Subjt:  MDYTGRKKQSKSRSKKS-AGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSS---AAFLDHQLLADDGDLMTDRDRR

Query:  FAAGKLGSAAAPTA----EDLVLQSFDHGSFAELFHGFLHES-----ELPGFSSLL
          AGK+ +AA  ++    EDLV+++FD  SFAE+F  FLH+S     E+PGFS+LL
Subjt:  FAAGKLGSAAAPTA----EDLVLQSFDHGSFAELFHGFLHES-----ELPGFSSLL

XP_022139181.1 uncharacterized protein LOC111010149 [Momordica charantia]

1.7e-35

63.4

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Query:  MDYTGRKKQSKSRSKKSAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLH--SSAAFLDHQLLADDGDLMTDRD--RR
        MD  GRK+    RSKKSA DFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FMELIAAAAAADR +L   SSAAFLDHQLL D  D   DRD   R
Subjt:  MDYTGRKKQSKSRSKKSAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLH--SSAAFLDHQLLADDGDLMTDRD--RR

Query:  FAAGKLGS---AAAPTAEDLVLQSFDHGSFAELFHGFLHES----ELPGFSSL
          +G + S   ++    +DL+LQ+FD  +FA++FHGFLH+S    ++PG + L
Subjt:  FAAGKLGS---AAAPTAEDLVLQSFDHGSFAELFHGFLHES----ELPGFSSL

XP_022945563.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]

8.4e-35

64.1

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Query:  MDYTGRKKQSKSRSKKS-AGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSS---AAFLDHQLLADDGDLMTDRDRR
        MD T  KKQSK RS+KS A DFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELIAAAA++DR NL SS   +AFLD+QLL DD   +TD D R
Subjt:  MDYTGRKKQSKSRSKKS-AGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSS---AAFLDHQLLADDGDLMTDRDRR

Query:  FAAGKLGSAAAPTA----EDLVLQSFDHGSFAELFHGFLHES-----ELPGFSSLL
          AGK+ +AA  ++    EDLV+++FD  SFAE+F  FLH+S     E+PGFS+LL
Subjt:  FAAGKLGSAAAPTA----EDLVLQSFDHGSFAELFHGFLHES-----ELPGFSSLL

XP_022966872.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita maxima]

4.9e-35

64.74

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Query:  MDYTGRKKQSKSRSKKS-AGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSS---AAFLDHQLLADDGDLMTDRDRR
        MD T  K+QSK RS+KS A DFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELIAAAA++DR NL SS   +AFLD+QLL DD   +TD D R
Subjt:  MDYTGRKKQSKSRSKKS-AGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSS---AAFLDHQLLADDGDLMTDRDRR

Query:  FAAGKLGSAAAPTA----EDLVLQSFDHGSFAELFHGFLHES-----ELPGFSSLL
          AGK+ +AA  ++    EDLV+Q+FD  SFAE+F  FLHES     E+PGFS+LL
Subjt:  FAAGKLGSAAAPTA----EDLVLQSFDHGSFAELFHGFLHES-----ELPGFSSLL

XP_023542375.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.7e-35

65.38

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Query:  MDYTGRKKQSKSRSKKS-AGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSS---AAFLDHQLLADDGDLMTDRDRR
        MD T  KKQSK RS+KS A DFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELIAAAA++DR NL SS   +AFLD+QLL DD   +TD D R
Subjt:  MDYTGRKKQSKSRSKKS-AGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSS---AAFLDHQLLADDGDLMTDRDRR

Query:  FAAGKLGSAAAPTA----EDLVLQSFDHGSFAELFHGFLHES-----ELPGFSSLL
          AGK+ +AA  ++    EDLV+Q+FD  SFAE+F  FLHES     E+PGFS+LL
Subjt:  FAAGKLGSAAAPTA----EDLVLQSFDHGSFAELFHGFLHES-----ELPGFSSLL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CBX0 uncharacterized protein LOC111010149

8.2e-36

63.4

Show/hide

Query:  MDYTGRKKQSKSRSKKSAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLH--SSAAFLDHQLLADDGDLMTDRD--RR
        MD  GRK+    RSKKSA DFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FMELIAAAAAADR +L   SSAAFLDHQLL D  D   DRD   R
Subjt:  MDYTGRKKQSKSRSKKSAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLH--SSAAFLDHQLLADDGDLMTDRD--RR

Query:  FAAGKLGS---AAAPTAEDLVLQSFDHGSFAELFHGFLHES----ELPGFSSL
          +G + S   ++    +DL+LQ+FD  +FA++FHGFLH+S    ++PG + L
Subjt:  FAAGKLGS---AAAPTAEDLVLQSFDHGSFAELFHGFLHES----ELPGFSSL

A0A6J1G190 sigma factor binding protein 1, chloroplastic-like

4.1e-35

64.1

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Query:  MDYTGRKKQSKSRSKKS-AGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSS---AAFLDHQLLADDGDLMTDRDRR
        MD T  KKQSK RS+KS A DFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELIAAAA++DR NL SS   +AFLD+QLL DD   +TD D R
Subjt:  MDYTGRKKQSKSRSKKS-AGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSS---AAFLDHQLLADDGDLMTDRDRR

Query:  FAAGKLGSAAAPTA----EDLVLQSFDHGSFAELFHGFLHES-----ELPGFSSLL
          AGK+ +AA  ++    EDLV+++FD  SFAE+F  FLH+S     E+PGFS+LL
Subjt:  FAAGKLGSAAAPTA----EDLVLQSFDHGSFAELFHGFLHES-----ELPGFSSLL

A0A6J1GZT9 sigma factor binding protein 1, chloroplastic-like

2.4e-27

62.22

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Query:  MDYTGRKKQSKSRSKKSAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSSAAFLDHQLLADDGDLMTDRDRRFAAG
        MD  G+K     R+KKSA  FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE+FMELI    AADR     S+AFLD+Q+L DD   + DRD R  AG
Subjt:  MDYTGRKKQSKSRSKKSAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSSAAFLDHQLLADDGDLMTDRDRRFAAG

Query:  KLGSAA-----APTAEDLVLQSFDHGSFAELFHGF
        K+ +AA     AP  +D VLQ+FD  SF E+ HGF
Subjt:  KLGSAA-----APTAEDLVLQSFDHGSFAELFHGF

A0A6J1HP65 sigma factor binding protein 1, chloroplastic-like

2.4e-35

64.74

Show/hide

Query:  MDYTGRKKQSKSRSKKS-AGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSS---AAFLDHQLLADDGDLMTDRDRR
        MD T  K+QSK RS+KS A DFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELIAAAA++DR NL SS   +AFLD+QLL DD   +TD D R
Subjt:  MDYTGRKKQSKSRSKKS-AGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSS---AAFLDHQLLADDGDLMTDRDRR

Query:  FAAGKLGSAAAPTA----EDLVLQSFDHGSFAELFHGFLHES-----ELPGFSSLL
          AGK+ +AA  ++    EDLV+Q+FD  SFAE+F  FLHES     E+PGFS+LL
Subjt:  FAAGKLGSAAAPTA----EDLVLQSFDHGSFAELFHGFLHES-----ELPGFSSLL

A0A6J1JD32 uncharacterized protein LOC111483942

1.2e-26

62.96

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Query:  MDYTGRKKQSKSRSKKSAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSSAAFLDHQLLADDGDLMTDRDRRFAAG
        MD  G KKQ K R+KKSA +FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE+F+ELI    A DR     S+AFLD+Q+L DD   + +RD R  AG
Subjt:  MDYTGRKKQSKSRSKKSAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSSAAFLDHQLLADDGDLMTDRDRRFAAG

Query:  KLGSAA-----APTAEDLVLQSFDHGSFAELFHGF
        K+ +AA     AP A+DLVLQ+FD  SF E+  GF
Subjt:  KLGSAA-----APTAEDLVLQSFDHGSFAELFHGF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G41180.1 VQ motif-containing protein

1.6e-04

53.49

Show/hide

Query:  QSKSRSKKSAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        + K +S  +    KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  QSKSRSKKSAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

AT3G56710.1 sigma factor binding protein 1

9.7e-05

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Query:  RKKQSKSRSKKSAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        +  + K ++  +    KV YIS+PM+V+T ASKFR LVQ+LTGQD+
Subjt:  RKKQSKSRSKKSAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

Sequences

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CDS sequence

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ATGGATTATACCGGCCGCAAGAAACAGTCCAAATCTCGAAGCAAGAAATCGGCCGGCGATTTCAAGGTGGTGTACATTTCCAGTCCGATGAAGGTGAAAACCAGCGCCTC
CAAGTTCCGATCTCTCGTCCAGAAACTCACCGGCCAGGATTCCGACGCCGAGAACTTCATGGAACTCATCGCCGCCGCCGCCGCCGCTGATCGGACGAATCTTCACTCGT
CGGCGGCGTTCCTCGACCACCAACTCCTCGCCGACGACGGCGATTTAATGACTGATCGCGATCGTCGTTTTGCGGCTGGAAAACTCGGATCGGCGGCGGCTCCGACGGCG
GAGGATTTGGTTTTGCAGAGCTTTGATCACGGCAGTTTTGCGGAATTGTTCCATGGTTTTTTGCATGAATCTGAGCTGCCAGGTTTCAGTTCGTTACTGTAG

mRNA sequence

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CTCAATTGTTTCATTTTCATTAGACCTTTTTTTTTCTCCCAAATTTTCCAACTCACCACTTTCCCGGAAACCGCCCCCTTGTTTGTTTCCCGAGAAAATCTCCCCCCTTC
ATCCGTACTCCGTTTCTATAAATCCCACCGCCAAACACTCCCAATTTTCCACTCCAAAATCATTTTAAACACTGCAATTAATTAGTTTCAACACAGAGAAATCCAAATAA
GTATAAATCCGATGGATTATACCGGCCGCAAGAAACAGTCCAAATCTCGAAGCAAGAAATCGGCCGGCGATTTCAAGGTGGTGTACATTTCCAGTCCGATGAAGGTGAAA
ACCAGCGCCTCCAAGTTCCGATCTCTCGTCCAGAAACTCACCGGCCAGGATTCCGACGCCGAGAACTTCATGGAACTCATCGCCGCCGCCGCCGCCGCTGATCGGACGAA
TCTTCACTCGTCGGCGGCGTTCCTCGACCACCAACTCCTCGCCGACGACGGCGATTTAATGACTGATCGCGATCGTCGTTTTGCGGCTGGAAAACTCGGATCGGCGGCGG
CTCCGACGGCGGAGGATTTGGTTTTGCAGAGCTTTGATCACGGCAGTTTTGCGGAATTGTTCCATGGTTTTTTGCATGAATCTGAGCTGCCAGGTTTCAGTTCGTTACTG
TAGGTTCGGGCGTACGCTATAGTTTCTCCATTTTTTTTTACTCAATAAGGTGACGTGGATTTGTATAGGTGGATGATTATGAATTGTTGTCGACAGTTTTTTGTCCATGA
TTATATTATTTTTAATATTATATACGTGA

Protein sequence

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MDYTGRKKQSKSRSKKSAGDFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAENFMELIAAAAAADRTNLHSSAAFLDHQLLADDGDLMTDRDRRFAAGKLGSAAAPTA
EDLVLQSFDHGSFAELFHGFLHESELPGFSSLL

Sed0006618 (gene) of Chayote v1 genome