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Sed0006626 (gene) of Chayote v1 genome

Gene IDSed0006626
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG14:3841457..3842990
RNA-Seq ExpressionSed0006626
SyntenySed0006626
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]6.8e-3280.95Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELI     +KR+
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]6.8e-3280.95Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELI     +KR+
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]6.8e-3280.95Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELI     +KR+
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]6.8e-3280.95Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELI     +KR+
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL

XP_031742390.1 uncharacterized protein LOC116401672 [Cucumis sativus]6.8e-3280.95Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELI     +KR+
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL

TrEMBL top hitse value%identityAlignment
A0A5A7STD3 Ty3-gypsy retrotransposon protein6.2e-3177.38Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLP+CKRPE+ GKV+DPNYCKYH+V+SHP+EKCFVLKELI     +K++
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL

A0A5A7ULK6 Retrotransposon gag protein7.4e-3279.76Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELI     +K++
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL

A0A5A7V6U6 Ty3-gypsy retrotransposon protein8.1e-3175.29Show/hide
Query:  EQRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL
        +++R+ TL+ERQEKVYPFPDSD+ADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELI     KK++
Subjt:  EQRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL

A0A5A7V7Z6 Ty3-gypsy retrotransposon protein7.4e-3279.76Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL
        +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELI     +K++
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL

A0A5D3DWV0 Ty3-gypsy retrotransposon protein8.1e-3178.57Show/hide
Query:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL
        +RRRLTL+ERQEKVYPFP SDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV+SHP+EKCFVLKELI     +K++
Subjt:  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAAAGGAAGAAACACTACCTCGAAGGTGCTTGCTCCAAGGAACTACACTGGACCTATCACGCTTATGGAGCAACGACGTCGCCTAACACTTCAGGAAAGACAAGA
AAAAGTCTATCCATTTCCGGACTCCGATATAGCTGACATGTTAGAGCAACTGCTGGAAGCAAAACTCATCCAGTTGCCCGAATGCAAGCGTCCCGAGGAGTTAGGCAAGG
TAAATGATCCTAACTACTGTAAATACCATCGCGTTGTCAGCCATCCTATCGAGAAATGCTTCGTCTTGAAAGAGTTGATTCGAGGTTGGCTAGAGAAAAAAAGATTGAGC
CGGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCAAAGGAAGAAACACTACCTCGAAGGTGCTTGCTCCAAGGAACTACACTGGACCTATCACGCTTATGGAGCAACGACGTCGCCTAACACTTCAGGAAAGACAAGA
AAAAGTCTATCCATTTCCGGACTCCGATATAGCTGACATGTTAGAGCAACTGCTGGAAGCAAAACTCATCCAGTTGCCCGAATGCAAGCGTCCCGAGGAGTTAGGCAAGG
TAAATGATCCTAACTACTGTAAATACCATCGCGTTGTCAGCCATCCTATCGAGAAATGCTTCGTCTTGAAAGAGTTGATTCGAGGTTGGCTAGAGAAAAAAAGATTGAGC
CGGACTTAG
Protein sequenceShow/hide protein sequence
MIKGRNTTSKVLAPRNYTGPITLMEQRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELIRGWLEKKRLS
RT