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Sed0006649 (gene) of Chayote v1 genome

Gene IDSed0006649
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase
Genome locationLG08:1946621..1949751
RNA-Seq ExpressionSed0006649
SyntenySed0006649
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035532.1 uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa]1.4e-2255.86Show/hide
Query:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEE--KAARPNVLERGDNSSSSVAHMEERM
        MS++   GK+Q DRLVE+EEQ+L+L EVPD+IR+LESR+EEI  KT  IDAV GRV+G P+QELM RV++LE      R    ERGD+S+ SVAH+EER+
Subjt:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEE--KAARPNVLERGDNSSSSVAHMEERM

Query:  KAVNSAALPIL
        + ++S+   +L
Subjt:  KAVNSAALPIL

KAA0045293.1 uncharacterized protein E6C27_scaffold316G00510 [Cucumis melo var. makuwa]1.4e-2255.96Show/hide
Query:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKA
        MS+    GK+Q DRL E+EEQ+L+L EVPD+IRFLESR+E+I  KT  IDAV GRV+GL +QEL+ RV++LEE   R    ERGD+S+ SVAH+EER++ 
Subjt:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKA

Query:  VNSAALPIL
        ++S+   +L
Subjt:  VNSAALPIL

KAA0046219.1 uncharacterized protein E6C27_scaffold284G00070 [Cucumis melo var. makuwa]4.7e-2357.8Show/hide
Query:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKA
        +SAN   GK+Q DRLVE+EEQ+L+L +VPD+IRFLESR+EEI  KT  IDAV GRV+GLP+QEL+ RV++LE    R    ERGD+S+ SVAH+EER++ 
Subjt:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKA

Query:  VNSAALPIL
        ++S+   +L
Subjt:  VNSAALPIL

TYK18977.1 uncharacterized protein E5676_scaffold418G00720 [Cucumis melo var. makuwa]1.0e-2258.82Show/hide
Query:  GKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALP
        GK+Q DRLVE+EEQ+L+L +VPD+IRFLESR+EEI  KT  IDAV GRV+GLP+QEL+ RV++LE    R    ERGD+S+ SVAH+EER++ ++S+   
Subjt:  GKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALP

Query:  IL
        +L
Subjt:  IL

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]2.0e-2656.9Show/hide
Query:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKA
        MS  KQ GKS  DRLVEIEE+LLFLRE+PDN+R++ESR++EI TK   ID V  R+DGL ++ELMLRVE+LE+K  R + LERG++SSSS+AHMEER++ 
Subjt:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKA

Query:  VNSAALPILGVARRTT
        ++ +   I+ +    T
Subjt:  VNSAALPILGVARRTT

TrEMBL top hitse value%identityAlignment
A0A5A7SW95 Retrotrans_gag domain-containing protein6.6e-2355.86Show/hide
Query:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEE--KAARPNVLERGDNSSSSVAHMEERM
        MS++   GK+Q DRLVE+EEQ+L+L EVPD+IR+LESR+EEI  KT  IDAV GRV+G P+QELM RV++LE      R    ERGD+S+ SVAH+EER+
Subjt:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEE--KAARPNVLERGDNSSSSVAHMEERM

Query:  KAVNSAALPIL
        + ++S+   +L
Subjt:  KAVNSAALPIL

A0A5A7TP22 Uncharacterized protein6.6e-2355.96Show/hide
Query:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKA
        MS+    GK+Q DRL E+EEQ+L+L EVPD+IRFLESR+E+I  KT  IDAV GRV+GL +QEL+ RV++LEE   R    ERGD+S+ SVAH+EER++ 
Subjt:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKA

Query:  VNSAALPIL
        ++S+   +L
Subjt:  VNSAALPIL

A0A5A7TY91 Retrotrans_gag domain-containing protein2.3e-2357.8Show/hide
Query:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKA
        +SAN   GK+Q DRLVE+EEQ+L+L +VPD+IRFLESR+EEI  KT  IDAV GRV+GLP+QEL+ RV++LE    R    ERGD+S+ SVAH+EER++ 
Subjt:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKA

Query:  VNSAALPIL
        ++S+   +L
Subjt:  VNSAALPIL

A0A5D3D5Z0 Retrotrans_gag domain-containing protein5.0e-2358.82Show/hide
Query:  GKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALP
        GK+Q DRLVE+EEQ+L+L +VPD+IRFLESR+EEI  KT  IDAV GRV+GLP+QEL+ RV++LE    R    ERGD+S+ SVAH+EER++ ++S+   
Subjt:  GKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALP

Query:  IL
        +L
Subjt:  IL

A0A6J1DLQ6 uncharacterized protein LOC1110223209.8e-2756.9Show/hide
Query:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKA
        MS  KQ GKS  DRLVEIEE+LLFLRE+PDN+R++ESR++EI TK   ID V  R+DGL ++ELMLRVE+LE+K  R + LERG++SSSS+AHMEER++ 
Subjt:  MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKA

Query:  VNSAALPILGVARRTT
        ++ +   I+ +    T
Subjt:  VNSAALPILGVARRTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCAAACAAGCAACCTGGTAAGTCGCAAACCGACCGATTGGTCGAAATAGAAGAGCAACTGCTCTTCTTGAGAGAAGTTCCTGACAACATCCGGTTCTTGGAATC
TCGAATGGAAGAGATCGAGACCAAGACCGGCCAAATTGACGCTGTAGTTGGCCGCGTGGACGGGTTGCCCGTCCAAGAGTTGATGCTGAGGGTTGAGTCCCTAGAAGAGA
AAGCTGCACGACCCAATGTCCTGGAACGGGGGGACAATTCGTCGAGCTCTGTGGCCCATATGGAAGAGCGAATGAAAGCGGTTAATTCGGCAGCGCTACCCATCCTAGGG
GTAGCGAGACGAACAACACTAAAGCTGGGAGAATGGAAAAGACAGGCAAACTTTGTGATTGGATTCGAACTCATGACCTCCTGCTCTGATACCATGTTGAATTATGTTAA
ACCACCAATTAATCCAAAAGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCAAACAAGCAACCTGGTAAGTCGCAAACCGACCGATTGGTCGAAATAGAAGAGCAACTGCTCTTCTTGAGAGAAGTTCCTGACAACATCCGGTTCTTGGAATC
TCGAATGGAAGAGATCGAGACCAAGACCGGCCAAATTGACGCTGTAGTTGGCCGCGTGGACGGGTTGCCCGTCCAAGAGTTGATGCTGAGGGTTGAGTCCCTAGAAGAGA
AAGCTGCACGACCCAATGTCCTGGAACGGGGGGACAATTCGTCGAGCTCTGTGGCCCATATGGAAGAGCGAATGAAAGCGGTTAATTCGGCAGCGCTACCCATCCTAGGG
GTAGCGAGACGAACAACACTAAAGCTGGGAGAATGGAAAAGACAGGCAAACTTTGTGATTGGATTCGAACTCATGACCTCCTGCTCTGATACCATGTTGAATTATGTTAA
ACCACCAATTAATCCAAAAGCCTAA
Protein sequenceShow/hide protein sequence
MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALPILG
VARRTTLKLGEWKRQANFVIGFELMTSCSDTMLNYVKPPINPKA