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Sed0006665 (gene) of Chayote v1 genome

Gene IDSed0006665
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG06:3134828..3135239
RNA-Seq ExpressionSed0006665
SyntenySed0006665
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571728.1 hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sororia]2.6e-2460.16Show/hide
Query:  MAESVSTIDNPRFHTFLLSDSEIDAAIQLIHLSED---------DFTASSDDKSV----SVSSAAGFDADGSHTSRRRAA----TSALIEEIFEEIGVGA
        MA+S+S+  N RF T + SDSEID AIQL+HLSED           T+ SDDKSV    S ++AAG + DGSH+S RR A    T++LIE+IFEEIG  +
Subjt:  MAESVSTIDNPRFHTFLLSDSEIDAAIQLIHLSED---------DFTASSDDKSV----SVSSAAGFDADGSHTSRRRAA----TSALIEEIFEEIGVGA

Query:  NRRRRKRRSRSVYEIYKLTKPMI
        NRRRRKRRSRSVYEIYKLTKP I
Subjt:  NRRRRKRRSRSVYEIYKLTKPMI
KAG6588821.1 hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2158.97Show/hide
Query:  MAESVSTIDNPRFHTFLLSDSEIDAAIQLIHLSED---------DFTASSDDKSVSVSSAAGFD--ADGSHTSRRRAATSALIEEIFEEIGVGANRRRRK
        MAESVST  N RF T + SDSEID AIQLIHLSED           T+ SDDKS++ +S +  D   D    + RR   +  IE+I+EEIG GANRRRRK
Subjt:  MAESVSTIDNPRFHTFLLSDSEIDAAIQLIHLSED---------DFTASSDDKSVSVSSAAGFD--ADGSHTSRRRAATSALIEEIFEEIGVGANRRRRK

Query:  RRSRSVYEIYKLTKPMI
        RRSRSVYEIYKLTKP+I
Subjt:  RRSRSVYEIYKLTKPMI
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAATCAGTTTCCACCATCGACAATCCAAGATTCCACACCTTCCTCCTCTCCGACTCTGAAATCGACGCCGCAATTCAGCTTATTCATCTCAGCGAAGACGATTT
CACCGCTTCCAGCGACGACAAATCCGTCTCCGTCTCCTCCGCCGCCGGATTCGACGCCGACGGAAGCCACACTAGCCGCCGCAGAGCCGCCACAAGCGCTCTCATTGAAG
AAATCTTCGAAGAAATCGGAGTCGGCGCGAATCGGAGGCGGAGGAAGCGCCGGTCGCGTTCCGTTTACGAGATTTACAAATTGACGAAGCCGATGATCTGTGGAGGTGGA
ATCGCGAAGCGGAAATGGAATAGGTTTGCTGATCTCTGA
mRNA sequenceShow/hide mRNA sequence
CTACTACTTACCCTTCGTCTCTCGCTTTCAACGGACCTCTCCAATGGCGGAATCAGTTTCCACCATCGACAATCCAAGATTCCACACCTTCCTCCTCTCCGACTCTGAAA
TCGACGCCGCAATTCAGCTTATTCATCTCAGCGAAGACGATTTCACCGCTTCCAGCGACGACAAATCCGTCTCCGTCTCCTCCGCCGCCGGATTCGACGCCGACGGAAGC
CACACTAGCCGCCGCAGAGCCGCCACAAGCGCTCTCATTGAAGAAATCTTCGAAGAAATCGGAGTCGGCGCGAATCGGAGGCGGAGGAAGCGCCGGTCGCGTTCCGTTTA
CGAGATTTACAAATTGACGAAGCCGATGATCTGTGGAGGTGGAATCGCGAAGCGGAAATGGAATAGGTTTGCTGATCTCTGA
Protein sequenceShow/hide protein sequence
MAESVSTIDNPRFHTFLLSDSEIDAAIQLIHLSEDDFTASSDDKSVSVSSAAGFDADGSHTSRRRAATSALIEEIFEEIGVGANRRRRKRRSRSVYEIYKLTKPMICGGG
IAKRKWNRFADL