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Sed0006668 (gene) of Chayote v1 genome

Gene IDSed0006668
OrganismSechium edule (Chayote v1)
Descriptionclassical arabinogalactan protein 9-like
Genome locationLG10:36397365..36398986
RNA-Seq ExpressionSed0006668
SyntenySed0006668
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR044981 - Lysine-rich arabinogalactan protein AGP9/17/18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571935.1 hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sororia]2.8e-4673.02Show/hide
Query:  MNCQALLSFTLIFIALAGAAAQ------------------SPPATPPPAT-----TPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA
        M+ QAL   TLI IA A A AQ                   PPATPPP +     TPPPA+PPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA
Subjt:  MNCQALLSFTLIFIALAGAAAQ------------------SPPATPPPAT-----TPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA

Query:  TPPPAS-----PPPASPPPASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEM
        TPPPAS     PPPASPPPA+PPPA+PPPATPPPAPLASPP AVPAPAPSKKK KAAP  +P+SSPP+PSA+ PGPAG +SPTPSQ+DNSGVEK WRKE 
Subjt:  TPPPAS-----PPPASPPPASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEM

Query:  MVGSMLIGMGYVFMM
        MVGSMLIGMGYV MM
Subjt:  MVGSMLIGMGYVFMM

KAG7011623.1 hypothetical protein SDJN02_26529, partial [Cucurbita argyrosperma subsp. argyrosperma]9.0e-4581.61Show/hide
Query:  AAAQSPPATPPPATTPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPAS-----PPPASPPPASPPPASPPPATPPPAPLASPP
        ++A  PP + PP  TPPPA+PPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPAS     PPPASPPPA+PPPA+PPPATPPPAPLASPP
Subjt:  AAAQSPPATPPPATTPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPAS-----PPPASPPPASPPPASPPPATPPPAPLASPP

Query:  VAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMM
         AVPAPAPSKKK KAAP  +P+SSPP+PSA+ PGPAG +SPTPSQ+DNSGVEK WRKE MVGSMLIGMGYV MM
Subjt:  VAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMM

XP_008455018.1 PREDICTED: classical arabinogalactan protein 9 [Cucumis melo]4.2e-4277Show/hide
Query:  LLSFTLIFIALAGAAAQ----------SPPAT--PPPATTPPP-ASPPPAS--PPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPP
        LL FT I IA A A AQ          SPP T  PPPA+TPPP +SPPPA+  PP ATPPPASPPPA+PPPASPPPATPPPASPPPA+PPPASPPPASPP
Subjt:  LLSFTLIFIALAGAAAQ----------SPPAT--PPPATTPPP-ASPPPAS--PPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPP

Query:  PASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTK-AAPVSSPLSSPPLPSADAPGPAGSD-SPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMML
        PASPPPASPPPA PPPAPLASPP AVPAPAPSKKK K AAP  +P+SSPP PS +APGPAG D SPTPSQ+DNSGVEKVWRKE MVGS++IGMGYVF+ML
Subjt:  PASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTK-AAPVSSPLSSPPLPSADAPGPAGSD-SPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMML

XP_022952421.1 classical arabinogalactan protein 9-like [Cucurbita moschata]1.1e-4773.56Show/hide
Query:  MNCQALLSFTLIFIALAGAAAQ-----------------SPPATPPPATTP----PPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATP
        M+ QAL  FTLIF+A A A AQ                  PPATPPP + P    PPA+PPPASPPPATPPPASPPPATPPPASPPPA+PPPA+PPPA+P
Subjt:  MNCQALLSFTLIFIALAGAAAQ-----------------SPPATPPPATTP----PPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATP

Query:  PPASPPPASPPPASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEMMVGSMLI
        PPA+PPPASPPPA+PPPA+PPPATPPPAPLASPP AVPAPAPSKKK KAAP  +P+SSPP+PSA+ PGPAG +SPTPSQ+DNSGVEK WRKE MVGSMLI
Subjt:  PPASPPPASPPPASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEMMVGSMLI

Query:  GMGYVFMM
        GMGYV MM
Subjt:  GMGYVFMM

XP_023553858.1 classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]9.3e-5076.1Show/hide
Query:  MNCQALLSFTLIFIALAGAAAQ------------------SPPATPPPATTPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPA
        M+ QAL  FTLI IA A A AQ                   PPATPPP ++PPPA+PPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPA
Subjt:  MNCQALLSFTLIFIALAGAAAQ------------------SPPATPPPATTPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPA

Query:  SPPPASPPPASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEMMVGSMLIGMG
        SPPPA+PPPASPPPA+PPPATPPP PLASPP AVPAPAPSKKK KAAP  +P+SSPP+PSA+ PGPAG +SPTPSQ+DNSGVEK WRKE MVGSMLIGMG
Subjt:  SPPPASPPPASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEMMVGSMLIGMG

Query:  YVFMM
        YV MM
Subjt:  YVFMM

TrEMBL top hitse value%identityAlignment
A0A0A0K6D8 Uncharacterized protein1.3e-4177.95Show/hide
Query:  MNCQALLSFTLIFIALAGAAAQSPPATPPPATTPPP--ASPPPAS--PPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPASPPP
        M+ +ALL FTLI IA   A AQS P++PP AT  PP  ++PPP S  PP ATPPPASPPPA+PPPASPPPATPPPASPPPA+PPPASPPPASPPPA+PPP
Subjt:  MNCQALLSFTLIFIALAGAAAQSPPATPPPATTPPP--ASPPPAS--PPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPASPPP

Query:  AS-PPPATPPPAPLASPPVAVPAPAPSKKKTK-AAPVSSPLSSPPLPSADAPGPAGSD-SPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMML
        AS PPPATPPPAPLASPP AVPAPAPSKKK K AAP  SP+SSPP PS +APGPAG D SPTPSQ+DNSGVEKVWRKE MVGS++IGMGYVF+ML
Subjt:  AS-PPPATPPPAPLASPPVAVPAPAPSKKKTK-AAPVSSPLSSPPLPSADAPGPAGSD-SPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMML

A0A1S3BZW9 classical arabinogalactan protein 92.0e-4277Show/hide
Query:  LLSFTLIFIALAGAAAQ----------SPPAT--PPPATTPPP-ASPPPAS--PPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPP
        LL FT I IA A A AQ          SPP T  PPPA+TPPP +SPPPA+  PP ATPPPASPPPA+PPPASPPPATPPPASPPPA+PPPASPPPASPP
Subjt:  LLSFTLIFIALAGAAAQ----------SPPAT--PPPATTPPP-ASPPPAS--PPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPP

Query:  PASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTK-AAPVSSPLSSPPLPSADAPGPAGSD-SPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMML
        PASPPPASPPPA PPPAPLASPP AVPAPAPSKKK K AAP  +P+SSPP PS +APGPAG D SPTPSQ+DNSGVEKVWRKE MVGS++IGMGYVF+ML
Subjt:  PASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTK-AAPVSSPLSSPPLPSADAPGPAGSD-SPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMML

A0A5A7SJX5 Classical arabinogalactan protein 92.0e-4277Show/hide
Query:  LLSFTLIFIALAGAAAQ----------SPPAT--PPPATTPPP-ASPPPAS--PPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPP
        LL FT I IA A A AQ          SPP T  PPPA+TPPP +SPPPA+  PP ATPPPASPPPA+PPPASPPPATPPPASPPPA+PPPASPPPASPP
Subjt:  LLSFTLIFIALAGAAAQ----------SPPAT--PPPATTPPP-ASPPPAS--PPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPP

Query:  PASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTK-AAPVSSPLSSPPLPSADAPGPAGSD-SPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMML
        PASPPPASPPPA PPPAPLASPP AVPAPAPSKKK K AAP  +P+SSPP PS +APGPAG D SPTPSQ+DNSGVEKVWRKE MVGS++IGMGYVF+ML
Subjt:  PASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTK-AAPVSSPLSSPPLPSADAPGPAGSD-SPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMML

A0A6J1GK65 classical arabinogalactan protein 9-like5.5e-4873.56Show/hide
Query:  MNCQALLSFTLIFIALAGAAAQ-----------------SPPATPPPATTP----PPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATP
        M+ QAL  FTLIF+A A A AQ                  PPATPPP + P    PPA+PPPASPPPATPPPASPPPATPPPASPPPA+PPPA+PPPA+P
Subjt:  MNCQALLSFTLIFIALAGAAAQ-----------------SPPATPPPATTP----PPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATP

Query:  PPASPPPASPPPASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEMMVGSMLI
        PPA+PPPASPPPA+PPPA+PPPATPPPAPLASPP AVPAPAPSKKK KAAP  +P+SSPP+PSA+ PGPAG +SPTPSQ+DNSGVEK WRKE MVGSMLI
Subjt:  PPASPPPASPPPASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEMMVGSMLI

Query:  GMGYVFMM
        GMGYV MM
Subjt:  GMGYVFMM

A0A6J1I8J9 classical arabinogalactan protein 9-like1.3e-3361.4Show/hide
Query:  MNCQALLSFTLIFIALAGAAAQSPPATPPPATTPPP-----------------------------------------ASPPPASPPPATPPPASPPPATP
        M+ QAL  FTLI IA A A AQ PP++PP AT  PP                                                   ATPPPASPPPATP
Subjt:  MNCQALLSFTLIFIALAGAAAQSPPATPPPATTPPP-----------------------------------------ASPPPASPPPATPPPASPPPATP

Query:  PPASPPPATPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQS
        PPASPPPATPPPASPPPAT     PPPASPPPA+PPPA+PPPATPPPAPLASPP AVPAPAPSKKK KAAP S+P+SSPP+PSA+ PGPAG +SPTPSQ+
Subjt:  PPASPPPATPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQS

Query:  DNSGVEKVWRKEMMVGSMLIGMGYVFMM
        DNSGVEK WRKE ++GSMLIGMGYV MM
Subjt:  DNSGVEKVWRKEMMVGSMLIGMGYVFMM

SwissProt top hitse value%identityAlignment
Q9C5S0 Classical arabinogalactan protein 92.6e-1054.12Show/hide
Query:  LIFIALAGAAAQSP-------PATPPPATTPPPASPPPASPPPATPPPASPPPAT--PPPASPPP--ATPPPASPPPATPPPASPPPASPPPASPPPASP
        +  + +AG   Q+P       PA P P T PP A+PPP S PP  P   SPPP T  PPPA+PPP  ++PPPASPPPATPPP + PP  PP ASPPPA+P
Subjt:  LIFIALAGAAAQSP-------PATPPPATTPPPASPPPASPPPATPPPASPPPAT--PPPASPPP--ATPPPASPPPATPPPASPPPASPPPASPPPASP

Query:  PP-ATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPA-GSDSPTPSQ---SDNSGVEKVWRKEMMVGSMLIGMGYVFMML
        PP ATPPPAPLASPP  VPAPAP+ K    +P  SP SSPPLPS+DAPGP+  S SP PS    +D +G  K      MV S++ G   V+ M+
Subjt:  PP-ATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPA-GSDSPTPSQ---SDNSGVEKVWRKEMMVGSMLIGMGYVFMML

Arabidopsis top hitse value%identityAlignment
AT2G14890.1 arabinogalactan protein 91.8e-1154.12Show/hide
Query:  LIFIALAGAAAQSP-------PATPPPATTPPPASPPPASPPPATPPPASPPPAT--PPPASPPP--ATPPPASPPPATPPPASPPPASPPPASPPPASP
        +  + +AG   Q+P       PA P P T PP A+PPP S PP  P   SPPP T  PPPA+PPP  ++PPPASPPPATPPP + PP  PP ASPPPA+P
Subjt:  LIFIALAGAAAQSP-------PATPPPATTPPPASPPPASPPPATPPPASPPPAT--PPPASPPP--ATPPPASPPPATPPPASPPPASPPPASPPPASP

Query:  PP-ATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPA-GSDSPTPSQ---SDNSGVEKVWRKEMMVGSMLIGMGYVFMML
        PP ATPPPAPLASPP  VPAPAP+ K    +P  SP SSPPLPS+DAPGP+  S SP PS    +D +G  K      MV S++ G   V+ M+
Subjt:  PP-ATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPA-GSDSPTPSQ---SDNSGVEKVWRKEMMVGSMLIGMGYVFMML

AT2G14890.2 arabinogalactan protein 92.4e-1159.51Show/hide
Query:  LIFIALAGAAAQSP-------PATPPPATTPPPASPPPASPPPATPPPASPPPAT--PPPASPPP--ATPPPASPPPATPPPASPPPASPPPASPPPASP
        +  + +AG   Q+P       PA P P T PP A+PPP S PP  P   SPPP T  PPPA+PPP  ++PPPASPPPATPPP + PP  PP ASPPPA+P
Subjt:  LIFIALAGAAAQSP-------PATPPPATTPPPASPPPASPPPATPPPASPPPAT--PPPASPPP--ATPPPASPPPATPPPASPPPASPPPASPPPASP

Query:  PP-ATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPA-GSDSPTPSQSD
        PP ATPPPAPLASPP  VPAPAP+ K    +P  SP SSPPLPS+DAPGP+  S SP PS +D
Subjt:  PP-ATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPA-GSDSPTPSQSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTGTCAAGCTTTGTTGTCTTTCACTTTGATCTTTATTGCCCTCGCCGGCGCCGCCGCTCAGTCCCCGCCCGCCACCCCTCCTCCGGCCACCACTCCCCCTCCGGC
ATCCCCGCCGCCGGCATCACCACCTCCGGCCACACCACCACCGGCGTCTCCGCCACCAGCCACCCCGCCTCCGGCTTCTCCTCCACCGGCCACCCCGCCTCCTGCTTCCC
CTCCTCCGGCGACCCCACCGCCGGCATCCCCTCCTCCGGCGTCTCCGCCACCGGCTTCTCCACCGCCGGCCAGTCCTCCACCCGCAACCCCACCTCCTGCGCCACTGGCA
TCTCCACCGGTGGCGGTTCCGGCGCCTGCACCGAGTAAGAAGAAGACGAAGGCGGCTCCGGTTTCATCGCCATTGTCGAGCCCGCCGTTGCCGTCAGCGGACGCGCCAGG
ACCGGCCGGTTCTGATTCTCCCACCCCATCTCAGAGCGACAATAGCGGAGTCGAAAAAGTGTGGCGAAAGGAGATGATGGTTGGTAGCATGTTGATTGGAATGGGATATG
TGTTTATGATGCTTTAG
mRNA sequenceShow/hide mRNA sequence
CCTCAATCAAATTTGTCTAATTTTCTCTTATTTCACAAAAACAACAAATAATTATGAATTGTCAAGCTTTGTTGTCTTTCACTTTGATCTTTATTGCCCTCGCCGGCGCC
GCCGCTCAGTCCCCGCCCGCCACCCCTCCTCCGGCCACCACTCCCCCTCCGGCATCCCCGCCGCCGGCATCACCACCTCCGGCCACACCACCACCGGCGTCTCCGCCACC
AGCCACCCCGCCTCCGGCTTCTCCTCCACCGGCCACCCCGCCTCCTGCTTCCCCTCCTCCGGCGACCCCACCGCCGGCATCCCCTCCTCCGGCGTCTCCGCCACCGGCTT
CTCCACCGCCGGCCAGTCCTCCACCCGCAACCCCACCTCCTGCGCCACTGGCATCTCCACCGGTGGCGGTTCCGGCGCCTGCACCGAGTAAGAAGAAGACGAAGGCGGCT
CCGGTTTCATCGCCATTGTCGAGCCCGCCGTTGCCGTCAGCGGACGCGCCAGGACCGGCCGGTTCTGATTCTCCCACCCCATCTCAGAGCGACAATAGCGGAGTCGAAAA
AGTGTGGCGAAAGGAGATGATGGTTGGTAGCATGTTGATTGGAATGGGATATGTGTTTATGATGCTTTAGAAGGAAGGGATGAACATATTTAATGTGTCTCTTTACCTTT
TGCAGTGCCCCCTATTTTTGTTGTCTGTTATTTTTGTTGCTTTATATTTCATTTGAATCATTTTGATTATTATTAGCCCCCTCATGTCTTGTTTGGGGCTTTTTGATTTA
TTATCTTAGCCTTTGAACTCTCTGATCTCTCTTTATATATAAATATATTAATTCATTTGCTTGGATTCTTTTGAGATAAAAA
Protein sequenceShow/hide protein sequence
MNCQALLSFTLIFIALAGAAAQSPPATPPPATTPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPAPLA
SPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMML