; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0006679 (gene) of Chayote v1 genome

Gene IDSed0006679
OrganismSechium edule (Chayote v1)
DescriptionRNA-directed RNA polymerase
Genome locationLG12:5775608..5776010
RNA-Seq ExpressionSed0006679
SyntenySed0006679
Gene Ontology termsGO:0001172 - transcription, RNA-templated (biological process)
GO:0003968 - RNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5587814.1 hypothetical protein H5410_048248 [Solanum commersonii]9.2e-2387.1Show/hide
Query:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLW RLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP++
Subjt:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ

KAG6597448.1 hypothetical protein SDJN03_10628, partial [Cucurbita argyrosperma subsp. sororia]2.9e-2496.43Show/hide
Query:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
        MGWLQSLFSPLKKLW RLHSSP+KRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
Subjt:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP

KGN56989.1 hypothetical protein Csa_010650 [Cucumis sativus]7.2e-2898.36Show/hide
Query:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
        MGWLQSLFSPLKKLW RLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
Subjt:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ

PHT38775.1 hypothetical protein CQW23_22348 [Capsicum baccatum]1.1e-2388.71Show/hide
Query:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLW RLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP++
Subjt:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ

PKI42574.1 hypothetical protein CRG98_037041 [Punica granatum]9.2e-2387.1Show/hide
Query:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESH-TPLPPKQ
        MGWL+SL SP+KKLWLRLH++PKKRRGIYILYEDVKSCPCEDVHVLWSILVESH  PLP KQ
Subjt:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESH-TPLPPKQ

TrEMBL top hitse value%identityAlignment
A0A0A0L7K5 Uncharacterized protein3.5e-2898.36Show/hide
Query:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
        MGWLQSLFSPLKKLW RLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
Subjt:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ

A0A0V0GKY9 Putative ovule protein4.4e-2387.1Show/hide
Query:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLW RLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP++
Subjt:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ

A0A2G2W0L8 Uncharacterized protein5.2e-2488.71Show/hide
Query:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLW RLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP++
Subjt:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ

A0A2G2ZVG2 Uncharacterized protein5.2e-2488.71Show/hide
Query:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLW RLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP++
Subjt:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ

M1CYA3 Uncharacterized protein4.4e-2387.1Show/hide
Query:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLW RLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP++
Subjt:  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGCTTCGCCTCCATTCTTCGCCGAAGAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATC
CTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGCTTCGCCTCCATTCTTCGCCGAAGAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATC
CTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGA
Protein sequenceShow/hide protein sequence
MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ