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Sed0006786 (gene) of Chayote v1 genome

Gene IDSed0006786
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG02:45619101..45619463
RNA-Seq ExpressionSed0006786
SyntenySed0006786
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3622233.1 hypothetical protein FXO38_31400 [Capsicum annuum]2.9e-2862.93Show/hide
Query:  MSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVH
        +   KF++EKFDG +NFG+WQVQVKDVL+QSGLHKALK  P+    EK + D   +E    SSK S+KS +SD+EWEE+D++AAS IRL LAKNVLANV 
Subjt:  MSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVH

Query:  GISTAKELWEKLEAMY
        G+ST KELWEKLE +Y
Subjt:  GISTAKELWEKLEAMY

KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]4.9e-2861.74Show/hide
Query:  SSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHG
        +S++++VEKFDG +NFGLWQVQVKDVL+QSGLHKALKG P+     + S D   T+ +        +S MSD++WE++DLRAAS IRL LAKNVLAN+HG
Subjt:  SSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHG

Query:  ISTAKELWEKLEAMY
        ISTAK+LWEKLE +Y
Subjt:  ISTAKELWEKLEAMY

KAF7802225.1 cytochrome p450 [Senna tora]2.1e-3165Show/hide
Query:  MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVL
        M+ F S+VKFDVEKFDG +NFGLWQVQVKDVL+QSGLHKAL+G  S  D EKS                  +S+MSD +WEE+DLRAAS IRL+LAKNVL
Subjt:  MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVL

Query:  ANVHGISTAKELWEKLEAMY
        ANV GISTAKELW+KLE +Y
Subjt:  ANVHGISTAKELWEKLEAMY

KAF7810708.1 cytochrome p450 [Senna tora]5.8e-2962.5Show/hide
Query:  MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVL
        M+ F S++KFDVEKFDG +NFG WQVQVKDVL+QSGL KAL+G  S  D EKS                  +S+MSD +WEE+DLRAAS IRL LAKNVL
Subjt:  MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVL

Query:  ANVHGISTAKELWEKLEAMY
        ANV GISTAKELW+KLE +Y
Subjt:  ANVHGISTAKELWEKLEAMY

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]1.5e-4077.5Show/hide
Query:  MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVL
        M+ FMS VK DVEKFDG++NFGLWQVQVKDVL+QS LHKALKG PS G  EK S DGG  ESSGGSS+GSKKS+MS ++WEEMDLRAAS IR +LAKN+L
Subjt:  MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVL

Query:  ANVHGISTAKELWEKLEAMY
        ANVH ISTAKELWEKLEA+Y
Subjt:  ANVHGISTAKELWEKLEAMY

TrEMBL top hitse value%identityAlignment
A0A2G3AMB5 Uncharacterized protein4.9e-2663.39Show/hide
Query:  KFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGIST
        KF++EKFDG +NF LWQVQVKDVL+QSGL+KALK  P+        GD  S +S   SSK S+K  +SD+EWEE+D++AAS IRL LAKNVLANV G+ST
Subjt:  KFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGIST

Query:  AKELWEKLEAMY
         KELWEKLE +Y
Subjt:  AKELWEKLEAMY

A0A6A2YS90 Transcription initiation factor IIA subunit 21.1e-2561.61Show/hide
Query:  KFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGIST
        +FD+EKFDG +NFGLWQVQVKD+L+QSGL+KALKG P+      S  +G   +    SS    KS MS++EWEE+D+RAAS IRL LAKNVLANV   S+
Subjt:  KFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGIST

Query:  AKELWEKLEAMY
         KELWEKLE MY
Subjt:  AKELWEKLEAMY

A0A6A3BK59 CCHC-type domain-containing protein4.9e-2661.4Show/hide
Query:  SVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGI
        S +FD+EKFDG +NFGLWQVQVKD+L+QSGL+KALKG P+      S  +G   +    SS    KS MS++EWEE+D+RAAS IRL LAKNVLANV   
Subjt:  SVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGI

Query:  STAKELWEKLEAMY
        S+ KELWEKLE MY
Subjt:  STAKELWEKLEAMY

A0A6A3CWI3 CCHC-type domain-containing protein4.9e-2661.4Show/hide
Query:  SVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGI
        S +FD+EKFDG +NFGLWQVQVKD+L+QSGL+KALKG P+      S  +G   +    SS    KS MS++EWEE+D+RAAS IRL LAKNVLANV   
Subjt:  SVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGI

Query:  STAKELWEKLEAMY
        S+ KELWEKLE MY
Subjt:  STAKELWEKLEAMY

A0A6J1CG82 uncharacterized protein LOC1110105217.1e-4177.5Show/hide
Query:  MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVL
        M+ FMS VK DVEKFDG++NFGLWQVQVKDVL+QS LHKALKG PS G  EK S DGG  ESSGGSS+GSKKS+MS ++WEEMDLRAAS IR +LAKN+L
Subjt:  MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVL

Query:  ANVHGISTAKELWEKLEAMY
        ANVH ISTAKELWEKLEA+Y
Subjt:  ANVHGISTAKELWEKLEAMY

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-1133.62Show/hide
Query:  MSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVH
        MS VK++V KF+G   F  WQ +++D+L+Q GLHK L                             K   M  ++W ++D RAAS IRL+L+ +V+ N+ 
Subjt:  MSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVH

Query:  GISTAKELWEKLEAMY
           TA+ +W +LE++Y
Subjt:  GISTAKELWEKLEAMY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGATTGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTAGTACAATCTGGATT
ACACAAAGCTTTGAAGGGAATACCAAGTGGTGGTGATTATGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTCTAAGAAGTCCA
ACATGAGTGATGACGAATGGGAGGAAATGGATTTGAGAGCTGCAAGTGTCATCAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAACAGCCAAA
GAGCTTTGGGAGAAGCTTGAAGCGATGTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGATTGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTAGTACAATCTGGATT
ACACAAAGCTTTGAAGGGAATACCAAGTGGTGGTGATTATGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTCTAAGAAGTCCA
ACATGAGTGATGACGAATGGGAGGAAATGGATTTGAGAGCTGCAAGTGTCATCAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAACAGCCAAA
GAGCTTTGGGAGAAGCTTGAAGCGATGTATTAG
Protein sequenceShow/hide protein sequence
MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGISTAK
ELWEKLEAMY