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Sed0006821 (gene) of Chayote v1 genome

Gene IDSed0006821
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG05:42290959..42291192
RNA-Seq ExpressionSed0006821
SyntenySed0006821
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
A0A444ZJA9 RNase H domain-containing protein7.6e-0436.23Show/hide
Query:  GNLFTEQRWPIVEETRVLARRLKSVKFSWCRRRANKLAHSLAKLAAHGETSNWWMKECPPCVLDMYRSE
        GN F E   PI+++ + + +RL +  FSW  R  NKLAH+LA L    + +N W    P  + ++ R+E
Subjt:  GNLFTEQRWPIVEETRVLARRLKSVKFSWCRRRANKLAHSLAKLAAHGETSNWWMKECPPCVLDMYRSE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATTTGTTTACAGAACAGAGGTGGCCAATTGTGGAGGAAACTAGAGTTCTTGCTCGTCGGTTGAAGTCGGTCAAATTTTCCTGGTGTCGACGTCGAGCTAATAA
ATTAGCACATTCCCTTGCAAAATTGGCCGCCCATGGAGAGACCTCGAACTGGTGGATGAAGGAGTGTCCTCCTTGTGTGTTGGATATGTATCGCTCTGAATTGAGATTGC
TTACGAAATGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAATTTGTTTACAGAACAGAGGTGGCCAATTGTGGAGGAAACTAGAGTTCTTGCTCGTCGGTTGAAGTCGGTCAAATTTTCCTGGTGTCGACGTCGAGCTAATAA
ATTAGCACATTCCCTTGCAAAATTGGCCGCCCATGGAGAGACCTCGAACTGGTGGATGAAGGAGTGTCCTCCTTGTGTGTTGGATATGTATCGCTCTGAATTGAGATTGC
TTACGAAATGTTAA
Protein sequenceShow/hide protein sequence
MGNLFTEQRWPIVEETRVLARRLKSVKFSWCRRRANKLAHSLAKLAAHGETSNWWMKECPPCVLDMYRSELRLLTKC