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Sed0006826 (gene) of Chayote v1 genome

Gene IDSed0006826
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG09:39740470..39741627
RNA-Seq ExpressionSed0006826
SyntenySed0006826
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG48912.1 hypothetical protein EZV62_024787 [Acer yangbiense]2.0e-1235.8Show/hide
Query:  QFAQMMENLDLAEQEAQGVFELEDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESV-----GEANAKGLGNMIGEFIGWDYEGD
        + A++ E L LA ++   V E+ D D  + E E+   +  K+ S   V+  A K LI ++W+   +V +  V         AK +   I   I   +E  
Subjt:  QFAQMMENLDLAEQEAQGVFELEDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESV-----GEANAKGLGNMIGEFIGWDYEGD

Query:  QRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCS
        +   GKFL+VKV IDI  PL+R L+LK         V L YE+LPEFC  CGR+GH +  CS
Subjt:  QRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCS

TXG54824.1 hypothetical protein EZV62_020080 [Acer yangbiense]4.1e-1332.71Show/hide
Query:  MDAFQFAQMMENLDLAEQEAQGVFELEDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESVGEANAKGLGNMIGEFIGWDYEGDQ
        M A +   + ENL +AE++   V E  + +I +   ++ C +  K+ +   V+  A + LI +IW              +  G    IGE +  +   D 
Subjt:  MDAFQFAQMMENLDLAEQEAQGVFELEDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESVGEANAKGLGNMIGEFIGWDYEGDQ

Query:  RN-RGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCSFVVIG----EGIPFPFGEELREPTS---HFRGEKPLIQ
        R   GKF+RVKV IDI   LRR L+LK G       V L YE+LPEFC  CGRVGH  ++C  V       E  P  +G  L+  T    ++R      +
Subjt:  RN-RGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCSFVVIG----EGIPFPFGEELREPTS---HFRGEKPLIQ

Query:  RQGRRGRGRERGRE
            RGR  E  RE
Subjt:  RQGRRGRGRERGRE

TXG64073.1 hypothetical protein EZV62_011067 [Acer yangbiense]5.3e-1337.5Show/hide
Query:  QFAQMMENLDLAEQEAQGVFEL-EDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESVGE---ANAKGLGNMIGEFIGWDYEGDQ
        + A++ ENL LA+++   + E+ E+       N   C+V  K+ S   V++ A K LI ++WN    V +ES+G      AK L   +GE I    E  +
Subjt:  QFAQMMENLDLAEQEAQGVFEL-EDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESVGE---ANAKGLGNMIGEFIGWDYEGDQ

Query:  RNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKC
           GKF+RVKVLI+I  PL+R L+LK         V L YE+LP+FC  CG +GH+   C
Subjt:  RNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKC

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]4.8e-1431.12Show/hide
Query:  LGNMIGEFIGWDYEGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCSFVVIGEGIPFPFGEELR--EPT
        +G  +GEF+  D E D+   G+FLRVKV I+I  PLRR + +  G  A E+W  ++YE LP+FC  CGR+GH    C    +  G   PFG ELR   P 
Subjt:  LGNMIGEFIGWDYEGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCSFVVIGEGIPFPFGEELR--EPT

Query:  SHFRGEKPLIQRQGRRGRGRE-------------RGREEDVRAEN-PWLGEDLVE-------EEAVAAPAR-----------EERQLPMDLERRMAGNGY
          F GE    Q   R G GR              RG     R++   W  +D+ E       EE V +P++           + ++   D    M+ +  
Subjt:  SHFRGEKPLIQRQGRRGRGRE-------------RGREEDVRAEN-PWLGEDLVE-------EEAVAAPAR-----------EERQLPMDLERRMAGNGY

Query:  SGAA--SGVRDLKGQIQSEGCA------EFGGKSGTELEDDNIR---------RKNREKLGGYKGHVAEDDKVVAIEKGKGKVVME
          AA  SG R+ KGQ   E  A      E   KS  +LE  N R         RK + ++ G K    +    V + K  G   M+
Subjt:  SGAA--SGVRDLKGQIQSEGCA------EFGGKSGTELEDDNIR---------RKNREKLGGYKGHVAEDDKVVAIEKGKGKVVME

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]1.7e-1443.09Show/hide
Query:  LGNMIGEFIGWDYEGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCSFVVIGEGIPFPFGEELR--EPT
        +G  +GEF+  D E D    G+FLRVKV I+I  PLRR + +  G  A E+W  ++YE LP+FC  CGR+GH    C   +  E    PFG ELR   P 
Subjt:  LGNMIGEFIGWDYEGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCSFVVIGEGIPFPFGEELR--EPT

Query:  SHFRGEKPLIQRQGRRGRGRERG
          F GE    Q   R G GR  G
Subjt:  SHFRGEKPLIQRQGRRGRGRERG

TrEMBL top hitse value%identityAlignment
A0A5C7GX56 CCHC-type domain-containing protein9.8e-1335.8Show/hide
Query:  QFAQMMENLDLAEQEAQGVFELEDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESV-----GEANAKGLGNMIGEFIGWDYEGD
        + A++ E L LA ++   V E+ D D  + E E+   +  K+ S   V+  A K LI ++W+   +V +  V         AK +   I   I   +E  
Subjt:  QFAQMMENLDLAEQEAQGVFELEDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESV-----GEANAKGLGNMIGEFIGWDYEGD

Query:  QRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCS
        +   GKFL+VKV IDI  PL+R L+LK         V L YE+LPEFC  CGR+GH +  CS
Subjt:  QRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCS

A0A5C7HCW1 CCHC-type domain-containing protein2.0e-1332.71Show/hide
Query:  MDAFQFAQMMENLDLAEQEAQGVFELEDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESVGEANAKGLGNMIGEFIGWDYEGDQ
        M A +   + ENL +AE++   V E  + +I +   ++ C +  K+ +   V+  A + LI +IW              +  G    IGE +  +   D 
Subjt:  MDAFQFAQMMENLDLAEQEAQGVFELEDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESVGEANAKGLGNMIGEFIGWDYEGDQ

Query:  RN-RGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCSFVVIG----EGIPFPFGEELREPTS---HFRGEKPLIQ
        R   GKF+RVKV IDI   LRR L+LK G       V L YE+LPEFC  CGRVGH  ++C  V       E  P  +G  L+  T    ++R      +
Subjt:  RN-RGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCSFVVIG----EGIPFPFGEELREPTS---HFRGEKPLIQ

Query:  RQGRRGRGRERGRE
            RGR  E  RE
Subjt:  RQGRRGRGRERGRE

A0A5C7I3H2 CCHC-type domain-containing protein2.6e-1337.5Show/hide
Query:  QFAQMMENLDLAEQEAQGVFEL-EDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESVGE---ANAKGLGNMIGEFIGWDYEGDQ
        + A++ ENL LA+++   + E+ E+       N   C+V  K+ S   V++ A K LI ++WN    V +ES+G      AK L   +GE I    E  +
Subjt:  QFAQMMENLDLAEQEAQGVFEL-EDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESVGE---ANAKGLGNMIGEFIGWDYEGDQ

Query:  RNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKC
           GKF+RVKVLI+I  PL+R L+LK         V L YE+LP+FC  CG +GH+   C
Subjt:  RNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKC

A0A5C7IWJ4 CCHC-type domain-containing protein2.2e-1234.17Show/hide
Query:  MDAFQFAQMMENLDLAEQEAQGVFELEDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESVGE-------ANAKGLGNMIGEFIG
        M   + A++ ENL LA+++       E+  I   E+   C+V  K+ +E  V+  A K LI +IWN    V +E VG+        N++   N +     
Subjt:  MDAFQFAQMMENLDLAEQEAQGVFELEDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESVGE-------ANAKGLGNMIGEFIG

Query:  WDYEGD----QRNRG--KFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKC----SFVVIGEGIPFPFGEELREPTS
        W +       ++  G  KF+RV V IDI  PL+R LKLK G       V L YE+LPEFC  CGR+GH    C    +     EG P  FG  L+   S
Subjt:  WDYEGD----QRNRG--KFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKC----SFVVIGEGIPFPFGEELREPTS

K3ZNG2 CCHC-type domain-containing protein4.4e-1337.39Show/hide
Query:  IWNIDQKVTLESVGEANAKGLGNMIGEFIGWDYEGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCSFV
        IW    ++ +  + +A A+ +G+  G+F+  D+E D    G+ LRVKV +DIRLPLRR + +  G    ++W  + YE LPEFC  CG +GH+   C+  
Subjt:  IWNIDQKVTLESVGEANAKGLGNMIGEFIGWDYEGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCSFV

Query:  VIGEGIPFPFGEELR
         +G+    PF   LR
Subjt:  VIGEGIPFPFGEELR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G36228.1 nucleic acid binding;zinc ion binding1.2e-0728.71Show/hide
Query:  IWNIDQKVTLESVGEANAKGLGNMIGEFIGWDYEGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCSFV
        +W   + + L  V E   + + + +GE +  D+  +  ++  F+RVKV +D   PLR   +++  A      +   YEKL   C  C RV H    C +V
Subjt:  IWNIDQKVTLESVGEANAKGLGNMIGEFIGWDYEGDQRNRGKFLRVKVLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCSFV

Query:  V
        V
Subjt:  V


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCTTTCCAGTTTGCACAAATGATGGAAAATTTGGACTTAGCTGAGCAGGAGGCCCAAGGGGTTTTTGAACTCGAGGATAACGATATCTCAAACTATGAAAATGA
GCTGGGTTGTGTGGTGGCGTGCAAGATTTTTTCGGAGGTTCTGGTCAGCCTAGCTGCGTTAAAAAAACTCATTCCAAAAATATGGAATATAGATCAAAAGGTTACTCTGG
AATCAGTGGGAGAAGCCAATGCAAAAGGATTAGGAAATATGATAGGCGAATTTATTGGATGGGACTATGAAGGGGATCAGAGAAATAGGGGAAAATTTCTGAGAGTAAAG
GTGTTGATTGACATTCGTTTACCTTTGAGAAGAGCCTTGAAATTGAAGAGCGGGGCTATGGCACCTGAGAAATGGGTTCGTTTATCCTATGAAAAACTGCCAGAGTTCTG
TCGAGGTTGTGGAAGAGTTGGCCATTTAGCGATGAAATGCAGTTTTGTGGTCATTGGTGAGGGTATCCCATTTCCTTTTGGAGAGGAGTTGAGAGAACCAACAAGCCATT
TTAGGGGAGAAAAACCTTTAATTCAGAGACAAGGAAGACGAGGAAGAGGTCGCGAAAGAGGTCGAGAAGAAGATGTTCGAGCAGAAAACCCATGGTTGGGAGAAGATCTT
GTAGAGGAAGAAGCTGTTGCTGCACCAGCAAGGGAGGAAAGGCAGCTTCCGATGGATCTTGAGCGGAGAATGGCCGGAAACGGCTACTCGGGTGCTGCCTCGGGAGTTCG
CGATTTGAAAGGTCAAATCCAATCTGAGGGTTGTGCAGAATTTGGGGGCAAGTCAGGTACGGAGCTGGAAGATGATAATATTAGAAGGAAAAATCGTGAAAAATTGGGAG
GATATAAGGGACACGTGGCGGAGGATGATAAGGTCGTAGCTATTGAAAAGGGGAAAGGTAAAGTTGTTATGGAAGGGAGGAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCTTTCCAGTTTGCACAAATGATGGAAAATTTGGACTTAGCTGAGCAGGAGGCCCAAGGGGTTTTTGAACTCGAGGATAACGATATCTCAAACTATGAAAATGA
GCTGGGTTGTGTGGTGGCGTGCAAGATTTTTTCGGAGGTTCTGGTCAGCCTAGCTGCGTTAAAAAAACTCATTCCAAAAATATGGAATATAGATCAAAAGGTTACTCTGG
AATCAGTGGGAGAAGCCAATGCAAAAGGATTAGGAAATATGATAGGCGAATTTATTGGATGGGACTATGAAGGGGATCAGAGAAATAGGGGAAAATTTCTGAGAGTAAAG
GTGTTGATTGACATTCGTTTACCTTTGAGAAGAGCCTTGAAATTGAAGAGCGGGGCTATGGCACCTGAGAAATGGGTTCGTTTATCCTATGAAAAACTGCCAGAGTTCTG
TCGAGGTTGTGGAAGAGTTGGCCATTTAGCGATGAAATGCAGTTTTGTGGTCATTGGTGAGGGTATCCCATTTCCTTTTGGAGAGGAGTTGAGAGAACCAACAAGCCATT
TTAGGGGAGAAAAACCTTTAATTCAGAGACAAGGAAGACGAGGAAGAGGTCGCGAAAGAGGTCGAGAAGAAGATGTTCGAGCAGAAAACCCATGGTTGGGAGAAGATCTT
GTAGAGGAAGAAGCTGTTGCTGCACCAGCAAGGGAGGAAAGGCAGCTTCCGATGGATCTTGAGCGGAGAATGGCCGGAAACGGCTACTCGGGTGCTGCCTCGGGAGTTCG
CGATTTGAAAGGTCAAATCCAATCTGAGGGTTGTGCAGAATTTGGGGGCAAGTCAGGTACGGAGCTGGAAGATGATAATATTAGAAGGAAAAATCGTGAAAAATTGGGAG
GATATAAGGGACACGTGGCGGAGGATGATAAGGTCGTAGCTATTGAAAAGGGGAAAGGTAAAGTTGTTATGGAAGGGAGGAATTAA
Protein sequenceShow/hide protein sequence
MDAFQFAQMMENLDLAEQEAQGVFELEDNDISNYENELGCVVACKIFSEVLVSLAALKKLIPKIWNIDQKVTLESVGEANAKGLGNMIGEFIGWDYEGDQRNRGKFLRVK
VLIDIRLPLRRALKLKSGAMAPEKWVRLSYEKLPEFCRGCGRVGHLAMKCSFVVIGEGIPFPFGEELREPTSHFRGEKPLIQRQGRRGRGRERGREEDVRAENPWLGEDL
VEEEAVAAPAREERQLPMDLERRMAGNGYSGAASGVRDLKGQIQSEGCAEFGGKSGTELEDDNIRRKNREKLGGYKGHVAEDDKVVAIEKGKGKVVMEGRN