; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0006838 (gene) of Chayote v1 genome

Gene IDSed0006838
OrganismSechium edule (Chayote v1)
DescriptionRING-type domain-containing protein
Genome locationLG10:8616777..8617349
RNA-Seq ExpressionSed0006838
SyntenySed0006838
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025673.1 RING-H2 finger protein ATL72-like [Cucumis melo var. makuwa]8.5e-7577.6Show/hide
Query:  MNSVQDLGFSYRRLLKD-SLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQ-LTAMPVYIYTGSSPNPTISNCSI
        MNSV DLG+S RRLLKD SL E PFG+RER+VTICATS IAA+F+ SLFISLFTCFRRQLN  PS KP +STC SQ LT MPVYIY  SS N   S C  
Subjt:  MNSVQDLGFSYRRLLKD-SLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQ-LTAMPVYIYTGSSPNPTISNCSI

Query:  SSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL
        +SFESRNCVICLAEFE GDELRVLP C+HVFHKGCIDQWLPLRSLLCPLCR+ TI+EI T+RRP+C+NY A+NPAFILAFGLGSN PLPSQL
Subjt:  SSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL

XP_008440820.1 PREDICTED: RING-H2 finger protein ATL72-like [Cucumis melo]8.5e-7577.6Show/hide
Query:  MNSVQDLGFSYRRLLKD-SLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQ-LTAMPVYIYTGSSPNPTISNCSI
        MNSV DLG+S RRLLKD SL E PFG+RER+VTICATS IAA+F+ SLFISLFTCFRRQLN  PS KP +STC SQ LT MPVYIY  SS N   S C  
Subjt:  MNSVQDLGFSYRRLLKD-SLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQ-LTAMPVYIYTGSSPNPTISNCSI

Query:  SSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL
        +SFESRNCVICLAEFE GDELRVLP C+HVFHKGCIDQWLPLRSLLCPLCR+ TI+EI T+RRP+C+NY A+NPAFILAFGLGSN PLPSQL
Subjt:  SSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL

XP_011658497.1 E3 ubiquitin-protein ligase RHA2B [Cucumis sativus]1.7e-7577.49Show/hide
Query:  MNSVQDLGFSYRRLLKDSLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQ-LTAMPVYIYTGSSPNPTISNCSIS
        MNSV DLG+S RRLLKDSL E PFG+RER+VTICATS IAA+F+ SLFISLFTCFRRQLN  PS KP +STC SQ LT MPVYIY  SS N   S C  +
Subjt:  MNSVQDLGFSYRRLLKDSLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQ-LTAMPVYIYTGSSPNPTISNCSIS

Query:  SFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL
        SFESR CVICLAEFE GDELRVLP C+HVFHKGCIDQWLPLRSLLCPLCR+ TI+EI T+RRPVC+NY ++NPAFILAFGLGSN PLPSQL
Subjt:  SFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL

XP_022133218.1 RING-H2 finger protein ATL79-like [Momordica charantia]1.5e-7172.25Show/hide
Query:  MNSVQDLGFSYRRLLKDSLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQLTAMPVYIYTGSSPNPTISNCSISS
        MNS+Q+LG SYRRLLKDS+ EHPFG RER +TIC TSLI AVF+FSLFIS  TCFRR++N   S KPPTS+C +QLT MPVYIY  SS NP       SS
Subjt:  MNSVQDLGFSYRRLLKDSLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQLTAMPVYIYTGSSPNPTISNCSISS

Query:  FESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRD-RTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL
        FES+NCVICLAEFE GDE+RVLP C H FHKGCIDQWL L SLLCPLCRD  T EEI T+RRP CTN  A+NPAFILAFGLGSN+P+PSQ+
Subjt:  FESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRD-RTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL

XP_038881295.1 RING-H2 finger protein ATL79-like [Benincasa hispida]9.7e-7977.89Show/hide
Query:  MNSVQDLGFSYRRLLKDSLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQLTAMPVYIYTGSSPNPTISNCSISS
        MNSV  LG+SYRRLLKDSL EHPFG+RER+VTICATS+IAA+F+ SLFISLFTCFR QLN  PS KPP ST  SQLT MPVYIY   S +P+ S C  SS
Subjt:  MNSVQDLGFSYRRLLKDSLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQLTAMPVYIYTGSSPNPTISNCSISS

Query:  FESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL
        FE RNCVICLAEF+ GDELRVLP C+H FHKGCIDQWL LRSLLCPLCRD T EEIGT+RRP+C+NY A+NPAFILAFGLGSNVPLPSQL
Subjt:  FESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL

TrEMBL top hitse value%identityAlignment
A0A0A0KKP7 RING-type domain-containing protein8.3e-7677.49Show/hide
Query:  MNSVQDLGFSYRRLLKDSLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQ-LTAMPVYIYTGSSPNPTISNCSIS
        MNSV DLG+S RRLLKDSL E PFG+RER+VTICATS IAA+F+ SLFISLFTCFRRQLN  PS KP +STC SQ LT MPVYIY  SS N   S C  +
Subjt:  MNSVQDLGFSYRRLLKDSLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQ-LTAMPVYIYTGSSPNPTISNCSIS

Query:  SFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL
        SFESR CVICLAEFE GDELRVLP C+HVFHKGCIDQWLPLRSLLCPLCR+ TI+EI T+RRPVC+NY ++NPAFILAFGLGSN PLPSQL
Subjt:  SFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL

A0A1S3B2S4 RING-H2 finger protein ATL72-like4.1e-7577.6Show/hide
Query:  MNSVQDLGFSYRRLLKD-SLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQ-LTAMPVYIYTGSSPNPTISNCSI
        MNSV DLG+S RRLLKD SL E PFG+RER+VTICATS IAA+F+ SLFISLFTCFRRQLN  PS KP +STC SQ LT MPVYIY  SS N   S C  
Subjt:  MNSVQDLGFSYRRLLKD-SLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQ-LTAMPVYIYTGSSPNPTISNCSI

Query:  SSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL
        +SFESRNCVICLAEFE GDELRVLP C+HVFHKGCIDQWLPLRSLLCPLCR+ TI+EI T+RRP+C+NY A+NPAFILAFGLGSN PLPSQL
Subjt:  SSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL

A0A5D3CLV8 RING-H2 finger protein ATL72-like4.1e-7577.6Show/hide
Query:  MNSVQDLGFSYRRLLKD-SLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQ-LTAMPVYIYTGSSPNPTISNCSI
        MNSV DLG+S RRLLKD SL E PFG+RER+VTICATS IAA+F+ SLFISLFTCFRRQLN  PS KP +STC SQ LT MPVYIY  SS N   S C  
Subjt:  MNSVQDLGFSYRRLLKD-SLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQ-LTAMPVYIYTGSSPNPTISNCSI

Query:  SSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL
        +SFESRNCVICLAEFE GDELRVLP C+HVFHKGCIDQWLPLRSLLCPLCR+ TI+EI T+RRP+C+NY A+NPAFILAFGLGSN PLPSQL
Subjt:  SSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL

A0A6J1BYH3 RING-H2 finger protein ATL79-like7.2e-7272.25Show/hide
Query:  MNSVQDLGFSYRRLLKDSLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQLTAMPVYIYTGSSPNPTISNCSISS
        MNS+Q+LG SYRRLLKDS+ EHPFG RER +TIC TSLI AVF+FSLFIS  TCFRR++N   S KPPTS+C +QLT MPVYIY  SS NP       SS
Subjt:  MNSVQDLGFSYRRLLKDSLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQLTAMPVYIYTGSSPNPTISNCSISS

Query:  FESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRD-RTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL
        FES+NCVICLAEFE GDE+RVLP C H FHKGCIDQWL L SLLCPLCRD  T EEI T+RRP CTN  A+NPAFILAFGLGSN+P+PSQ+
Subjt:  FESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRD-RTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL

A0A6J1GEN4 RING-H2 finger protein ATL74-like5.2e-7071.05Show/hide
Query:  MNSVQDLGFSYRRLLKDSLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQLTAMPVYIYTGSSPNPTISNCSISS
        MNS Q  G++YRRLLKDSLL+ PFG  ERLVTIC  S IAA F+ SLFISLFTCFRRQL    S KPP+STC  QL++MPVYIY  S+P    S+   SS
Subjt:  MNSVQDLGFSYRRLLKDSLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQLTAMPVYIYTGSSPNPTISNCSISS

Query:  FESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL
        FE+RNCVICLAEFE GDELRVLP C+H FHKGCIDQWLPLRSLLCPLCR+ +I+EIGT+R+PVCTN+ A+NPAF+LAF   SN PLPSQL
Subjt:  FESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL

SwissProt top hitse value%identityAlignment
O22255 RING-H2 finger protein ATL641.8e-1144.59Show/hide
Query:  LTAMPVYIYTGSSPNPTISNCSISSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCR
        L  +P+++Y+  +P P          E   C +CL+EFE+ DE R+LPKC H FH  CID W   RS  CPLCR
Subjt:  LTAMPVYIYTGSSPNPTISNCSISSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCR

Q5XF85 E3 ubiquitin-protein ligase ATL422.4e-1153.57Show/hide
Query:  SFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEE
        S +  +C +CL++FE  + LR+LPKC H FH GCIDQWL  +   CPLCRDR   E
Subjt:  SFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEE

Q67YI6 RING-H2 finger protein ATL652.4e-1137.21Show/hide
Query:  SQLTAMPVYIYTGSSPNPTISNCSISSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTL
        S +  +P+++Y+ ++     +    S+   R+C +CL EFE+GD +R LP C H FH  CID+WL      CPLCR   +   G L
Subjt:  SQLTAMPVYIYTGSSPNPTISNCSISSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTL

Q940Q4 RING-H2 finger protein ATL133.1e-1148.28Show/hide
Query:  NCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRP
        +C +CL EFE  D+LR+LPKC H FH  CID WL L    CPLCR   + ++ + + P
Subjt:  NCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRP

Q9LZJ6 RING-H2 finger protein ATL55.2e-1143.02Show/hide
Query:  SPKPPTSTCISQLTAMPVYIYTGSSPNPTISNCSISSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCR
        SP  PT      L  +P+++Y+  +    +  CS          +CL+EFE+ DE RVLPKC HVFH  CID W   RS  CPLCR
Subjt:  SPKPPTSTCISQLTAMPVYIYTGSSPNPTISNCSISSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCR

Arabidopsis top hitse value%identityAlignment
AT2G47560.1 RING/U-box superfamily protein1.3e-1244.59Show/hide
Query:  LTAMPVYIYTGSSPNPTISNCSISSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCR
        L  +P+++Y+  +P P          E   C +CL+EFE+ DE R+LPKC H FH  CID W   RS  CPLCR
Subjt:  LTAMPVYIYTGSSPNPTISNCSISSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCR

AT3G18930.1 RING/U-box superfamily protein1.7e-1237.21Show/hide
Query:  SQLTAMPVYIYTGSSPNPTISNCSISSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTL
        S +  +P+++Y+ ++     +    S+   R+C +CL EFE+GD +R LP C H FH  CID+WL      CPLCR   +   G L
Subjt:  SQLTAMPVYIYTGSSPNPTISNCSISSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTL

AT3G18930.2 RING/U-box superfamily protein1.7e-1237.21Show/hide
Query:  SQLTAMPVYIYTGSSPNPTISNCSISSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTL
        S +  +P+++Y+ ++     +    S+   R+C +CL EFE+GD +R LP C H FH  CID+WL      CPLCR   +   G L
Subjt:  SQLTAMPVYIYTGSSPNPTISNCSISSFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTL

AT4G28890.1 RING/U-box superfamily protein1.7e-1253.57Show/hide
Query:  SFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEE
        S +  +C +CL++FE  + LR+LPKC H FH GCIDQWL  +   CPLCRDR   E
Subjt:  SFESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEE

AT4G33565.1 RING/U-box superfamily protein2.2e-1230.57Show/hide
Query:  HPFGDRERLVTICATSLIAAVFLFSLFISLFT-CFRRQLNV---------------FPSPKPPTSTCISQLTAMPVYIYTGSSPNPTISN----CSISS-
        H   + +R++ I A+S+I  +FL +L +  F   +RR+ ++               F  P P        +   P++       NPT+ +    C  S  
Subjt:  HPFGDRERLVTICATSLIAAVFLFSLFISLFT-CFRRQLNV---------------FPSPKPPTSTCISQLTAMPVYIYTGSSPNPTISN----CSISS-

Query:  ---FESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIE
            E  +C +CL+EFE+ + LR+LPKC+H FH  CID WL   +  CPLCR   +E
Subjt:  ---FESRNCVICLAEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCAGTGCAAGATCTCGGTTTCAGTTACAGACGCCTTCTTAAAGATTCCTTACTTGAACATCCATTTGGAGACCGAGAAAGACTCGTTACCATTTGTGCAACTTC
TCTCATCGCGGCCGTGTTCTTATTCTCTTTGTTCATCTCCCTCTTCACGTGCTTTCGGCGTCAATTAAACGTCTTTCCTTCACCTAAACCTCCCACATCCACATGTATTA
GCCAACTCACTGCCATGCCTGTATATATCTATACTGGTTCGTCTCCAAATCCTACAATATCTAATTGTTCCATTTCGTCGTTCGAGTCCAGAAACTGTGTCATATGTTTG
GCAGAGTTCGAGAAAGGAGATGAGCTTCGTGTTCTGCCTAAGTGTGAGCATGTGTTTCATAAAGGTTGCATTGATCAATGGCTTCCGTTGAGGTCGTTGCTTTGCCCACT
TTGTCGAGACCGTACAATAGAGGAGATTGGGACCCTGAGGAGACCTGTTTGTACGAATTACGGGGCCCAAAATCCGGCCTTCATATTGGCCTTCGGCCTTGGTAGTAATG
TCCCACTGCCCTCCCAACTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATTCAGTGCAAGATCTCGGTTTCAGTTACAGACGCCTTCTTAAAGATTCCTTACTTGAACATCCATTTGGAGACCGAGAAAGACTCGTTACCATTTGTGCAACTTC
TCTCATCGCGGCCGTGTTCTTATTCTCTTTGTTCATCTCCCTCTTCACGTGCTTTCGGCGTCAATTAAACGTCTTTCCTTCACCTAAACCTCCCACATCCACATGTATTA
GCCAACTCACTGCCATGCCTGTATATATCTATACTGGTTCGTCTCCAAATCCTACAATATCTAATTGTTCCATTTCGTCGTTCGAGTCCAGAAACTGTGTCATATGTTTG
GCAGAGTTCGAGAAAGGAGATGAGCTTCGTGTTCTGCCTAAGTGTGAGCATGTGTTTCATAAAGGTTGCATTGATCAATGGCTTCCGTTGAGGTCGTTGCTTTGCCCACT
TTGTCGAGACCGTACAATAGAGGAGATTGGGACCCTGAGGAGACCTGTTTGTACGAATTACGGGGCCCAAAATCCGGCCTTCATATTGGCCTTCGGCCTTGGTAGTAATG
TCCCACTGCCCTCCCAACTGTAA
Protein sequenceShow/hide protein sequence
MNSVQDLGFSYRRLLKDSLLEHPFGDRERLVTICATSLIAAVFLFSLFISLFTCFRRQLNVFPSPKPPTSTCISQLTAMPVYIYTGSSPNPTISNCSISSFESRNCVICL
AEFEKGDELRVLPKCEHVFHKGCIDQWLPLRSLLCPLCRDRTIEEIGTLRRPVCTNYGAQNPAFILAFGLGSNVPLPSQL