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Sed0006855 (gene) of Chayote v1 genome

Gene IDSed0006855
OrganismSechium edule (Chayote v1)
Descriptionbasic helix-loop-helix (bHLH) DNA-binding superfamily protein
Genome locationLG04:47662684..47663371
RNA-Seq ExpressionSed0006855
SyntenySed0006855
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:2000112 - regulation of cellular macromolecule biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR045084 - Transcription factor AIB/MYC-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140617.1 transcription factor MYC2 [Cucumis sativus]1.5e-1683.05Show/hide
Query:  KDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        K+NA+NHV AERQRREKLN RFYALRS+VPNVSRMDKASLLSDAVSYI+ LKA+V E+E
Subjt:  KDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE

XP_023006584.1 transcription factor MYC2-like [Cucurbita maxima]2.0e-1659.22Show/hide
Query:  EEIIIPDHWSFDDVEFVKSLLNSDDMESPTAP-----RKSKRCRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVT
        EE+  PD       E    L  SD  +SP        R  KR RK+NA NHV AERQRREKLN RFYALRS+VPNVSRMDKASLL DAVSYI+ LK +V 
Subjt:  EEIIIPDHWSFDDVEFVKSLLNSDDMESPTAP-----RKSKRCRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVT

Query:  ELE
        E+E
Subjt:  ELE

XP_027931558.1 transcription factor MYC2-like [Vigna unguiculata]2.6e-1662.65Show/hide
Query:  PTAPRKSKRCRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELEWFMVSGEIKEKGP
        PT  R++ R R+   VNHV AERQRREKLN RFYALRS VPNVS+MDKASLLSDAV YI+ LKA+++ L+   V+ + K++GP
Subjt:  PTAPRKSKRCRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELEWFMVSGEIKEKGP

XP_031132413.1 transcription factor MYC1 [Ipomoea triloba]1.5e-1669.62Show/hide
Query:  SDDMESPTAPRKSKR---CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        S D +   AP+K  R     +D  VNHV AERQRREKLN RFYALRS+VPNVSRMDKASLLSDAVSYI++LKA+V ELE
Subjt:  SDDMESPTAPRKSKR---CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE

XP_038875083.1 transcription factor MYC1-like [Benincasa hispida]8.9e-1764.29Show/hide
Query:  DMESPTAPRKSKR----------CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        D +SP A  ++K+            K+NA+NHV AERQRREKLN RFYALRS+VPNVSRMDKASLLSDAVSYI+ LKA+V E+E
Subjt:  DMESPTAPRKSKR----------CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE

TrEMBL top hitse value%identityAlignment
A0A0A0KFN7 BHLH domain-containing protein7.3e-1783.05Show/hide
Query:  KDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        K+NA+NHV AERQRREKLN RFYALRS+VPNVSRMDKASLLSDAVSYI+ LKA+V E+E
Subjt:  KDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE

A0A2Z7CUW5 Basic helix-loop-helix family protein1.6e-1664.77Show/hide
Query:  FVKSLLNSDDMESPTAPRKSKRCRK-----DNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        F++S  N +   S T     KR RK     D  +NHV AERQRREKLN RFYALRS+VPNVSRMDKASLLSDAVSYI  LK+RV ELE
Subjt:  FVKSLLNSDDMESPTAPRKSKRCRK-----DNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE

A0A4D6KXU7 Transcription factor MYC21.3e-1662.65Show/hide
Query:  PTAPRKSKRCRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELEWFMVSGEIKEKGP
        PT  R++ R R+   VNHV AERQRREKLN RFYALRS VPNVS+MDKASLLSDAV YI+ LKA+++ L+   V+ + K++GP
Subjt:  PTAPRKSKRCRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELEWFMVSGEIKEKGP

A0A5A7TCG3 Transcription factor MYC2-like1.6e-1681.36Show/hide
Query:  KDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        K+NA+NHV AERQRREKLN RFYALRS+VPNVSRMDKASLLSDAVSYI+ LKA++ E+E
Subjt:  KDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE

A0A6J1L2K7 transcription factor MYC2-like9.6e-1759.22Show/hide
Query:  EEIIIPDHWSFDDVEFVKSLLNSDDMESPTAP-----RKSKRCRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVT
        EE+  PD       E    L  SD  +SP        R  KR RK+NA NHV AERQRREKLN RFYALRS+VPNVSRMDKASLL DAVSYI+ LK +V 
Subjt:  EEIIIPDHWSFDDVEFVKSLLNSDDMESPTAP-----RKSKRCRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVT

Query:  ELE
        E+E
Subjt:  ELE

SwissProt top hitse value%identityAlignment
A0A3Q7H216 Transcription factor MTB36.6e-1566.1Show/hide
Query:  KDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        ++ A+NHV AERQRREKLN RFYALR++VPN+S+MDKASLL DA++YI  L+AR+  L+
Subjt:  KDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE

A0A3Q7HRZ6 Transcription factor MYC25.1e-1552.81Show/hide
Query:  DVEFVKSLLNSDDMESPTAPRKSKR---CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        +   VK   +S  +E    PRK  R     ++  +NHV AERQRREKLN RFYALR++VPNVS+MDKASLL DA+SYI+ LK+++   E
Subjt:  DVEFVKSLLNSDDMESPTAPRKSKR---CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE

O23090 Transcription factor bHLH143.9e-1547.87Show/hide
Query:  IPDHWSFDDVEFVKSLLNSDDMESPTAPRKSKRCRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        + DH    + +F         +E+      +K       ++HV AE+QRREKLN RFYALR++VP VSRMDKASLLSDAVSYI +LK+++ +LE
Subjt:  IPDHWSFDDVEFVKSLLNSDDMESPTAPRKSKRCRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE

Q336P5 Transcription factor MYC23.0e-1560Show/hide
Query:  ESPTAPRKSKR---CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        E+   PRK  R     ++  +NHV AERQRREKLN RFYALR++VPNVS+MDKASLL DA+SYI+ L+ ++T LE
Subjt:  ESPTAPRKSKR---CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE

Q39204 Transcription factor MYC21.7e-1556.63Show/hide
Query:  RKSKRCRK-----DNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARV--TELEWFMVSGEIKE
        R  KR RK     +  +NHV AERQRREKLN RFYALR++VPNVS+MDKASLL DA++YI+ LK++V  TE E   +  +++E
Subjt:  RKSKRCRK-----DNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARV--TELEWFMVSGEIKE

Arabidopsis top hitse value%identityAlignment
AT1G01260.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.0e-1559.74Show/hide
Query:  DMESPTAPRKSKR---CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        D      PRK  R     +  A+NHV AERQRREKLN RFYALRS+VPN+S+MDKASLL DAVSYI+ L A++  +E
Subjt:  DMESPTAPRKSKR---CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE

AT1G01260.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.0e-1559.74Show/hide
Query:  DMESPTAPRKSKR---CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        D      PRK  R     +  A+NHV AERQRREKLN RFYALRS+VPN+S+MDKASLL DAVSYI+ L A++  +E
Subjt:  DMESPTAPRKSKR---CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE

AT1G01260.3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.0e-1559.74Show/hide
Query:  DMESPTAPRKSKR---CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        D      PRK  R     +  A+NHV AERQRREKLN RFYALRS+VPN+S+MDKASLL DAVSYI+ L A++  +E
Subjt:  DMESPTAPRKSKR---CRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE

AT1G32640.1 Basic helix-loop-helix (bHLH) DNA-binding family protein1.2e-1656.63Show/hide
Query:  RKSKRCRK-----DNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARV--TELEWFMVSGEIKE
        R  KR RK     +  +NHV AERQRREKLN RFYALR++VPNVS+MDKASLL DA++YI+ LK++V  TE E   +  +++E
Subjt:  RKSKRCRK-----DNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARV--TELEWFMVSGEIKE

AT4G00870.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.8e-1647.87Show/hide
Query:  IPDHWSFDDVEFVKSLLNSDDMESPTAPRKSKRCRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE
        + DH    + +F         +E+      +K       ++HV AE+QRREKLN RFYALR++VP VSRMDKASLLSDAVSYI +LK+++ +LE
Subjt:  IPDHWSFDDVEFVKSLLNSDDMESPTAPRKSKRCRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAATAATAATCCCCGATCATTGGAGCTTTGACGATGTGGAGTTTGTGAAAAGCCTGCTCAACTCCGACGACATGGAGTCCCCGACGGCACCCAGGAAGTCAAA
ACGATGCCGGAAAGACAATGCGGTGAACCACGTGGCGGCGGAGCGGCAGCGGAGGGAGAAGCTGAACACCCGATTCTACGCGCTCCGATCGCTGGTCCCCAATGTGTCGA
GAATGGACAAGGCGTCTCTCTTATCCGACGCCGTTTCGTACATCCATACGCTCAAGGCCAGAGTGACCGAGCTGGAATGGTTTATGGTCTCCGGCGAAATCAAAGAAAAA
GGACCTACAGTGTTTCTAAGTTTCTTTACAACAATAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAATAATAATCCCCGATCATTGGAGCTTTGACGATGTGGAGTTTGTGAAAAGCCTGCTCAACTCCGACGACATGGAGTCCCCGACGGCACCCAGGAAGTCAAA
ACGATGCCGGAAAGACAATGCGGTGAACCACGTGGCGGCGGAGCGGCAGCGGAGGGAGAAGCTGAACACCCGATTCTACGCGCTCCGATCGCTGGTCCCCAATGTGTCGA
GAATGGACAAGGCGTCTCTCTTATCCGACGCCGTTTCGTACATCCATACGCTCAAGGCCAGAGTGACCGAGCTGGAATGGTTTATGGTCTCCGGCGAAATCAAAGAAAAA
GGACCTACAGTGTTTCTAAGTTTCTTTACAACAATAAAATAA
Protein sequenceShow/hide protein sequence
MEEIIIPDHWSFDDVEFVKSLLNSDDMESPTAPRKSKRCRKDNAVNHVAAERQRREKLNTRFYALRSLVPNVSRMDKASLLSDAVSYIHTLKARVTELEWFMVSGEIKEK
GPTVFLSFFTTIK