CuGenDBv2

Gene ID	Sed0006857
Organism	Sechium edule (Chayote v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	LG06:34582587..34583210
RNA-Seq Expression	Sed0006857
Synteny	Sed0006857
Gene Ontology terms	GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0049700.1 T4.5 [Cucumis melo var. makuwa]

5.1e-21

35.27

Show/hide

Query:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML
        NP Y DW A+D+A+   IN+TLS   L+ V                           L+S LQ++ KK DE+ID Y++  K ++D L+N++  I++E++L
Subjt:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML

Query:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG
        IY LNGLP+E + F+T++RT+S P++FE L  LL+ EE ++  Q K   +    T +LS ++   S     D    RG GH     +GR ++    RG G
Subjt:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG

Query:  SYTPQQQ
        S +P+Q+
Subjt:  SYTPQQQ

KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-25

38.46

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Query:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML
        NP Y DWFA+D+A+   IN+TLS   L+ V                           L+S LQ++ KKSDE+ID Y++  K ++D L+N++ V++DE++L
Subjt:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML

Query:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS---------DKGTNRGRGH-YGRGNYGNSGRGRG
        IY LNGLP+E + F+T++RT+S+P++FE L  LLK EE ++  Q K        TA+L+ ++   S          +G  RGRGH +G  ++   GRG G
Subjt:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS---------DKGTNRGRGH-YGRGNYGNSGRGRG

Query:  SYTPQQQL
        S + QQQL
Subjt:  SYTPQQQL

KAG7015254.1 hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.6e-25

38.46

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Query:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML
        NP Y DWFA+D+A+   IN+TLS   L+ V                           L+S LQ++ KKSDE+ID Y++  K ++D L+N++ V++DE++L
Subjt:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML

Query:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS---------DKGTNRGRGH-YGRGNYGNSGRGRG
        IY LNGLP+E + F+T++RT+S+P++FE L  LLK EE ++  Q K        TA+L+ ++   S          +G  RGRGH +G  ++   GRG G
Subjt:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS---------DKGTNRGRGH-YGRGNYGNSGRGRG

Query:  SYTPQQQL
        S + QQQL
Subjt:  SYTPQQQL

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]

5.1e-21

35.27

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Query:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML
        NP Y DW A+D+A+   IN+TLS   L+ V                           L+S LQ++ KK DE+ID Y++  K ++D L+N++  I++E++L
Subjt:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML

Query:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG
        IY LNGLP+E + F+T++RT+S P++FE L  LL+ EE ++  Q K   +    T +LS ++   S     D    RG GH     +GR ++    RG G
Subjt:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG

Query:  SYTPQQQ
        S +P+Q+
Subjt:  SYTPQQQ

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]

5.1e-21

35.27

Show/hide

Query:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML
        NP Y DW A+D+A+   IN+TLS   L+ V                           L+S LQ++ KK DE+ID Y++  K ++D L+N++  I++E++L
Subjt:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML

Query:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG
        IY LNGLP+E + F+T++RT+S P++FE L  LL+ EE ++  Q K   +    T +LS ++   S     D    RG GH     +GR ++    RG G
Subjt:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG

Query:  SYTPQQQ
        S +P+Q+
Subjt:  SYTPQQQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BI58 uncharacterized protein LOC103490319 isoform X2

2.5e-21

35.27

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Query:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML
        NP Y DW A+D+A+   IN+TLS   L+ V                           L+S LQ++ KK DE+ID Y++  K ++D L+N++  I++E++L
Subjt:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML

Query:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG
        IY LNGLP+E + F+T++RT+S P++FE L  LL+ EE ++  Q K   +    T +LS ++   S     D    RG GH     +GR ++    RG G
Subjt:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG

Query:  SYTPQQQ
        S +P+Q+
Subjt:  SYTPQQQ

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X3

2.5e-21

35.27

Show/hide

Query:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML
        NP Y DW A+D+A+   IN+TLS   L+ V                           L+S LQ++ KK DE+ID Y++  K ++D L+N++  I++E++L
Subjt:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML

Query:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG
        IY LNGLP+E + F+T++RT+S P++FE L  LL+ EE ++  Q K   +    T +LS ++   S     D    RG GH     +GR ++    RG G
Subjt:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG

Query:  SYTPQQQ
        S +P+Q+
Subjt:  SYTPQQQ

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X1

2.5e-21

35.27

Show/hide

Query:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML
        NP Y DW A+D+A+   IN+TLS   L+ V                           L+S LQ++ KK DE+ID Y++  K ++D L+N++  I++E++L
Subjt:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML

Query:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG
        IY LNGLP+E + F+T++RT+S P++FE L  LL+ EE ++  Q K   +    T +LS ++   S     D    RG GH     +GR ++    RG G
Subjt:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG

Query:  SYTPQQQ
        S +P+Q+
Subjt:  SYTPQQQ

A0A5B7BD59 Retrotran_gag_3 domain-containing protein

3.4e-23

38.12

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Query:  NPQYIDWFAQDRAIKAPINSTLSTSDLS---------------------------LVLRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML
        NP Y  W  QD+A+ A IN+TL+ + LS                           L L+++LQSL K  D  ID Y+Q  K  RDSL+ ++V IDDE++L
Subjt:  NPQYIDWFAQDRAIKAPINSTLSTSDLS---------------------------LVLRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML

Query:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQP--SDKGTNRGRGHYGRGNYGNSGRGRGSYTPQQQL
        IY LNGLPSE +AF+TAIRT++ P++ E +  LL+ EE S+E   K ++   T +AM++ +   P  +++G NRGRG       G S    G ++  Q+ 
Subjt:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQP--SDKGTNRGRGHYGRGNYGNSGRGRGSYTPQQQL

Query:  TP
         P
Subjt:  TP

A0A5D3CLI6 T4.5

2.5e-21

35.27

Show/hide

Query:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML
        NP Y DW A+D+A+   IN+TLS   L+ V                           L+S LQ++ KK DE+ID Y++  K ++D L+N++  I++E++L
Subjt:  NPQYIDWFAQDRAIKAPINSTLSTSDLSLV---------------------------LRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEML

Query:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG
        IY LNGLP+E + F+T++RT+S P++FE L  LL+ EE ++  Q K   +    T +LS ++   S     D    RG GH     +GR ++    RG G
Subjt:  IYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLVTATAMLSINRGQPS-----DKGTNRGRGH-----YGRGNYGNSGRGRG

Query:  SYTPQQQ
        S +P+Q+
Subjt:  SYTPQQQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

1.9e-05

32.03

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Query:  DENIDTYVQSAKTLRDSLSNINVVIDDEEMLIYVLNGL-PSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLV---TATAMLSINRGQP
        D  +  Y +  K L DSL N++V + D  +++YVLNGL P  D+        Q  P SF+   T+L+ EE  ++   K + T V   +++ +L+ +   P
Subjt:  DENIDTYVQSAKTLRDSLSNINVVIDDEEMLIYVLNGL-PSEDSAFQTAIRTQSSPISFEHLFTLLKTEEHSIELQHKSHKTLV---TATAMLSINRGQP

Query:  SDKGTNRG---RGHYGRGNYGNSGRGRG
               G    G+ GRG   N  RGRG
Subjt:  SDKGTNRG---RGHYGRGNYGNSGRGRG

Sequences

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CDS sequence

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ATGAATCCACAATACATTGATTGGTTCGCTCAAGATCGAGCAATTAAAGCCCCGATCAATAGCACATTATCTACGTCTGATCTTTCTCTCGTTCTGCGATCATCACTTCA
ATCTCTAATCAAGAAGTCAGATGAAAATATCGACACCTATGTTCAATCTGCCAAAACATTGCGAGACTCTCTTTCTAACATTAATGTTGTTATTGATGATGAGGAAATGC
TGATCTATGTCCTAAATGGACTCCCCAGCGAAGATAGTGCCTTTCAGACAGCGATACGCACTCAATCTTCACCAATCTCGTTTGAGCATTTGTTTACCCTTCTCAAGACT
GAGGAACACTCAATTGAACTACAACATAAAAGCCATAAGACCTTAGTAACCGCTACTGCAATGCTTTCGATAAATCGTGGACAGCCTTCTGATAAAGGAACAAATCGAGG
CAGAGGTCACTATGGTCGAGGTAACTATGGGAATTCTGGTAGAGGTCGTGGATCCTACACTCCACAACAACAGCTCACACCTCCACCTCCCCCCCTCCACTGA

mRNA sequence

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Protein sequence

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MNPQYIDWFAQDRAIKAPINSTLSTSDLSLVLRSSLQSLIKKSDENIDTYVQSAKTLRDSLSNINVVIDDEEMLIYVLNGLPSEDSAFQTAIRTQSSPISFEHLFTLLKT
EEHSIELQHKSHKTLVTATAMLSINRGQPSDKGTNRGRGHYGRGNYGNSGRGRGSYTPQQQLTPPPPPLH

Sed0006857 (gene) of Chayote v1 genome