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Sed0006872 (gene) of Chayote v1 genome

Gene IDSed0006872
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L31
Genome locationLG13:21417723..21418808
RNA-Seq ExpressionSed0006872
SyntenySed0006872
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002150 - Ribosomal protein L31
IPR034704 - L28p-like
IPR042105 - Ribosomal protein L31 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041569.1 50S ribosomal protein L31 [Cucumis melo var. makuwa]5.9e-5988.06Show/hide
Query:  MALNLTNSF--LQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSF  LQRPI PA APP +KE  + + RPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSF--LQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELTQLMEIPVLKGEIIMPTKRKSGKGKKK
        RKKFGEL+QLMEIPVLKGEII+P+KRKS KGKKK
Subjt:  RKKFGELTQLMEIPVLKGEIIMPTKRKSGKGKKK

KAG6591302.1 50S ribosomal protein L31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.9e-5987.97Show/hide
Query:  MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK
        MALNLTNSFLQRPI P  APP  KEF + + R VVTCRKKDLHPQF+EDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK
Subjt:  MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK

Query:  KFGELTQLMEIPVLKGEIIMPTKRKS-GKGKKK
        KFGEL+QLMEIPVLKGEI++PTKRKS GKGKKK
Subjt:  KFGELTQLMEIPVLKGEIIMPTKRKS-GKGKKK

KAG6608549.1 50S ribosomal protein L31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]9.1e-6088.72Show/hide
Query:  MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK
        MALNLTNSFLQRP  PA APP NKE  +   RPVVTCRKKD+HPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK
Subjt:  MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK

Query:  KFGELTQLMEIPVLKGEIIMPTKRKS-GKGKKK
        KFGEL+QLMEIPVLKGEI++PTKRKS GKGKKK
Subjt:  KFGELTQLMEIPVLKGEIIMPTKRKS-GKGKKK

XP_022975559.1 50S ribosomal protein L31, chloroplastic-like [Cucurbita maxima]4.5e-5988.72Show/hide
Query:  MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK
        MALNLTNSFLQRPI P  APP  KEF + + R VVTCRKKDLHPQF+EDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK
Subjt:  MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK

Query:  KFGELTQLMEIPVLKGEIIMPTKRKS-GKGKKK
        KFGEL+QLMEIPVLKGEII+PTKRKS GKGKKK
Subjt:  KFGELTQLMEIPVLKGEIIMPTKRKS-GKGKKK

XP_023523361.1 50S ribosomal protein L31, chloroplastic-like [Cucurbita pepo subsp. pepo]9.1e-6088.72Show/hide
Query:  MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK
        MALNLTNSFLQRP  PA APP NKE  +   RPVVTCRKKD+HPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK
Subjt:  MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK

Query:  KFGELTQLMEIPVLKGEIIMPTKRKS-GKGKKK
        KFGEL+QLMEIPVLKGEI++PTKRKS GKGKKK
Subjt:  KFGELTQLMEIPVLKGEIIMPTKRKS-GKGKKK

TrEMBL top hitse value%identityAlignment
A0A1S3CRJ2 50S ribosomal protein L31, chloroplastic2.9e-5988.06Show/hide
Query:  MALNLTNSF--LQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSF  LQRPI PA APP +KE  + + RPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSF--LQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELTQLMEIPVLKGEIIMPTKRKSGKGKKK
        RKKFGEL+QLMEIPVLKGEII+P+KRKS KGKKK
Subjt:  RKKFGELTQLMEIPVLKGEIIMPTKRKSGKGKKK

A0A5A7TJN6 50S ribosomal protein L31, chloroplastic2.9e-5988.06Show/hide
Query:  MALNLTNSF--LQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSF  LQRPI PA APP +KE  + + RPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSF--LQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELTQLMEIPVLKGEIIMPTKRKSGKGKKK
        RKKFGEL+QLMEIPVLKGEII+P+KRKS KGKKK
Subjt:  RKKFGELTQLMEIPVLKGEIIMPTKRKSGKGKKK

A0A6J1FCM8 50S ribosomal protein L312.9e-5987.97Show/hide
Query:  MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK
        MALNLTNSFLQRPI P  APP  KEF + + R VVTCRKKDLHPQF+EDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK
Subjt:  MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK

Query:  KFGELTQLMEIPVLKGEIIMPTKRKS-GKGKKK
        KFGEL+QLMEIPVLKGEI++PTKRKS GKGKKK
Subjt:  KFGELTQLMEIPVLKGEIIMPTKRKS-GKGKKK

A0A6J1IKY2 50S ribosomal protein L312.2e-5988.72Show/hide
Query:  MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK
        MALNLTNSFLQRPI P  APP  KEF + + R VVTCRKKDLHPQF+EDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK
Subjt:  MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRK

Query:  KFGELTQLMEIPVLKGEIIMPTKRKS-GKGKKK
        KFGEL+QLMEIPVLKGEII+PTKRKS GKGKKK
Subjt:  KFGELTQLMEIPVLKGEIIMPTKRKS-GKGKKK

E5GCI4 50S ribosomal protein L31, chloroplastic2.9e-5988.06Show/hide
Query:  MALNLTNSF--LQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSF  LQRPI PA APP +KE  + + RPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSF--LQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELTQLMEIPVLKGEIIMPTKRKSGKGKKK
        RKKFGEL+QLMEIPVLKGEII+P+KRKS KGKKK
Subjt:  RKKFGELTQLMEIPVLKGEIIMPTKRKSGKGKKK

SwissProt top hitse value%identityAlignment
P82249 50S ribosomal protein L31, chloroplastic2.7e-4671.43Show/hide
Query:  MALNLTNSFLQR-PIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFR
        M L L+N FL + P  P T   T  +  SST RP  +CRK D+HP+F EDAKVYCNGELVMTTGGTQK+Y+V+VWSGNHPFYLG+RSALL+DADQVEKFR
Subjt:  MALNLTNSFLQR-PIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFR

Query:  KKFGELTQLMEIPVLKGEIIMPTKRKSGKGKKK
        KK+GELTQ+MEIPVLKGEII+P K+KS K KKK
Subjt:  KKFGELTQLMEIPVLKGEIIMPTKRKSGKGKKK

Q110D6 50S ribosomal protein L311.2e-1747.87Show/hide
Query:  KKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEKFRKKFGELTQLMEIPVLKGEIIMPTKRKSGKGKK
        K D+HP++Y +AKVYCNGE+VMT G TQ E  VDVWSGNHP++ G++   ++D + +VE+F +K+ +     E    K      TK K GKGKK
Subjt:  KKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEKFRKKFGELTQLMEIPVLKGEIIMPTKRKSGKGKK

Q31L35 50S ribosomal protein L312.6e-1758.82Show/hide
Query:  KKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEKFRKKFGEL
        K D+HPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNHPFY G++   ++D + +VE+F +K+G L
Subjt:  KKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEKFRKKFGEL

Q5N0T7 50S ribosomal protein L312.6e-1758.82Show/hide
Query:  KKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEKFRKKFGEL
        K D+HPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNHPFY G++   ++D + +VE+F +K+G L
Subjt:  KKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEKFRKKFGEL

Q9FWS4 50S ribosomal protein L31, chloroplastic7.8e-4665.28Show/hide
Query:  MALNLTNSFLQ-----------RPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL
        MA++L NSFLQ           +P+  A         RSS     +TCRKK+LHP+F+EDAKVYCNGELVMTTGGT+KEY VDVWSGNHPFYLG+RSAL+
Subjt:  MALNLTNSFLQ-----------RPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL

Query:  VDADQVEKFRKKFGELTQLMEIPVLKGEIIMPTKRKSG-KGKKK
        VDADQVEKFRK+F  L+++MEIPVLKGEIIMPTK+  G KGKKK
Subjt:  VDADQVEKFRKKFGELTQLMEIPVLKGEIIMPTKRKSG-KGKKK

Arabidopsis top hitse value%identityAlignment
AT1G75350.1 Ribosomal protein L315.5e-4765.28Show/hide
Query:  MALNLTNSFLQ-----------RPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL
        MA++L NSFLQ           +P+  A         RSS     +TCRKK+LHP+F+EDAKVYCNGELVMTTGGT+KEY VDVWSGNHPFYLG+RSAL+
Subjt:  MALNLTNSFLQ-----------RPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL

Query:  VDADQVEKFRKKFGELTQLMEIPVLKGEIIMPTKRKSG-KGKKK
        VDADQVEKFRK+F  L+++MEIPVLKGEIIMPTK+  G KGKKK
Subjt:  VDADQVEKFRKKFGELTQLMEIPVLKGEIIMPTKRKSG-KGKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTAAACCTAACCAATTCCTTCCTCCAACGGCCCATTTTTCCGGCGACCGCGCCGCCGACGAACAAGGAATTCAGATCCAGTACTCCCCGGCCGGTGGTGACCTG
CCGGAAAAAGGATCTGCATCCGCAATTTTACGAGGATGCTAAGGTTTACTGCAACGGAGAGTTGGTGATGACGACCGGCGGGACTCAGAAAGAGTATTCCGTCGATGTTT
GGTCCGGAAATCATCCGTTCTATTTGGGCAGCCGCTCGGCTCTGCTAGTCGACGCCGATCAGGTTGAGAAATTCCGGAAGAAATTTGGAGAACTTACGCAATTGATGGAG
ATTCCTGTTCTTAAAGGTGAAATTATTATGCCCACCAAACGCAAATCTGGGAAAGGGAAGAAGAAGTAG
mRNA sequenceShow/hide mRNA sequence
AAAGAACTCATCTCATAATCTTCTATTCCTCTCCAACTTATCCTCATCTTCTCTTCACCGCAATCGCAATGGCGCTAAACCTAACCAATTCCTTCCTCCAACGGCCCATT
TTTCCGGCGACCGCGCCGCCGACGAACAAGGAATTCAGATCCAGTACTCCCCGGCCGGTGGTGACCTGCCGGAAAAAGGATCTGCATCCGCAATTTTACGAGGATGCTAA
GGTTTACTGCAACGGAGAGTTGGTGATGACGACCGGCGGGACTCAGAAAGAGTATTCCGTCGATGTTTGGTCCGGAAATCATCCGTTCTATTTGGGCAGCCGCTCGGCTC
TGCTAGTCGACGCCGATCAGGTTGAGAAATTCCGGAAGAAATTTGGAGAACTTACGCAATTGATGGAGATTCCTGTTCTTAAAGGTGAAATTATTATGCCCACCAAACGC
AAATCTGGGAAAGGGAAGAAGAAGTAGAGGATTGTGAAGGGTTCGATTTAGCCTGGTAATCACTTCAATTTCTAATGCGTATTGAGATTTTTTATTCTTCTATTGCATTA
TGTATCTGTGTAATTTAGCCTAATCGAACTGTTTGTTGCATTGGATTGCATTGCTCTGTGTTGAATGCTTGATGTTGATAAATAGTTTAACATTGGTTGAGTATTCATGA
AAGGCTTAGTGACCTAGTAGTTTCATTGTTCCGTGATCGTAGAGTTCAACACCACGGTTTCGAGTTTGATTAGCTAAATCGGTATTTAGCTCTCATATTATTTGAGACTA
TTAGTAACCTCTATGGGGTGATTGGATTTTGGAGTTGAAAAGAAGAGAGGAGAGAAAGTGGAAAAGGAAGATGAAGTTGAGTGATTTAGAGATATGAAGTACTTGATTAG
AGATTGATATTTTAGAAAGGAGATGTTGTAAAAAGTATATATTTTATATTATTTCTTTGAATGTAATCATTACAAATTTATATTAATTAATAAATTTTATTTTATATTAT
GTGGTTGAAAA
Protein sequenceShow/hide protein sequence
MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLME
IPVLKGEIIMPTKRKSGKGKKK