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Sed0006910 (gene) of Chayote v1 genome

Gene IDSed0006910
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L34, chloroplastic
Genome locationLG10:1412737..1414558
RNA-Seq ExpressionSed0006910
SyntenySed0006910
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000271 - Ribosomal protein L34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134668.1 50S ribosomal protein L34, chloroplastic [Cucumis sativus]8.5e-5785.9Show/hide
Query:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSR-IRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF
        MAAIS LS+PW VSTGA+AVRVPSASL+ S GSR   SVSLNT NN SAR GLLH SFLPSSSLSCSS+FSGLSLGLDWSSK+GVGQGK R  VVRAGK 
Subjt:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSR-IRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF

Query:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
         LCQTKRNRSRKSLARTHGFRRRMRTT GRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
XP_008439748.1 PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo]3.4e-5887.82Show/hide
Query:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSR-IRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF
        MAAIS LSSPW VS GA+AVRVPSASL++S GSR   SVSLNTANNTSAR GLLH SFLPSSSLSCSS+FSGLSLGLDWSSK+GVGQGK RS VVRAGK 
Subjt:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSR-IRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF

Query:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
         LCQTKRNRSRKSLARTHGFRRRMRTT GRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
XP_022926470.1 50S ribosomal protein L34, chloroplastic-like [Cucurbita moschata]3.9e-5484.52Show/hide
Query:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKFL
        MAAIS +SS   VST    VRVPSASL+ S GSR  S+SLNTANN SARPGLLH SFLPSSSLSC S+FSGLSLGLDWS KIGVGQGKRRS VVRAGK  
Subjt:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKFL

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTT GRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
XP_023003306.1 50S ribosomal protein L34, chloroplastic-like [Cucurbita maxima]1.0e-5485.16Show/hide
Query:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKFL
        MAAIS +SS   VST    VRVPSASL+ S GSR  S+SLNTANN SARPGLLH SFLPSSSLSCSS+FSGLSLGLDWS KIGVGQGKRRS VVRAGK  
Subjt:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKFL

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTT GRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
XP_038883793.1 50S ribosomal protein L34, chloroplastic [Benincasa hispida]3.8e-5787.82Show/hide
Query:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSR-IRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF
        MAAIS LSSPW VSTGA AVRVPSASL++S G R   SVSLNTANNTSAR GLLH SFL SSSLSCSS+FSGLSLGLDWSSKIGVGQGK RS VVRAGK 
Subjt:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSR-IRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF

Query:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
         LCQTKRNRSRKSLARTHGFRRRMRTT GRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
TrEMBL top hitse value%identityAlignment
A0A0A0KI92 Uncharacterized protein4.1e-5785.9Show/hide
Query:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSR-IRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF
        MAAIS LS+PW VSTGA+AVRVPSASL+ S GSR   SVSLNT NN SAR GLLH SFLPSSSLSCSS+FSGLSLGLDWSSK+GVGQGK R  VVRAGK 
Subjt:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSR-IRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF

Query:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
         LCQTKRNRSRKSLARTHGFRRRMRTT GRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
A0A1S3AZG6 50S ribosomal protein L34, chloroplastic1.7e-5887.82Show/hide
Query:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSR-IRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF
        MAAIS LSSPW VS GA+AVRVPSASL++S GSR   SVSLNTANNTSAR GLLH SFLPSSSLSCSS+FSGLSLGLDWSSK+GVGQGK RS VVRAGK 
Subjt:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSR-IRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF

Query:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
         LCQTKRNRSRKSLARTHGFRRRMRTT GRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
A0A5D3CSJ7 50S ribosomal protein L341.7e-5887.82Show/hide
Query:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSR-IRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF
        MAAIS LSSPW VS GA+AVRVPSASL++S GSR   SVSLNTANNTSAR GLLH SFLPSSSLSCSS+FSGLSLGLDWSSK+GVGQGK RS VVRAGK 
Subjt:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSR-IRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF

Query:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
         LCQTKRNRSRKSLARTHGFRRRMRTT GRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
A0A6J1EL73 50S ribosomal protein L34, chloroplastic-like1.9e-5484.52Show/hide
Query:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKFL
        MAAIS +SS   VST    VRVPSASL+ S GSR  S+SLNTANN SARPGLLH SFLPSSSLSC S+FSGLSLGLDWS KIGVGQGKRRS VVRAGK  
Subjt:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKFL

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTT GRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
A0A6J1KNU0 50S ribosomal protein L34, chloroplastic-like5.0e-5585.16Show/hide
Query:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKFL
        MAAIS +SS   VST    VRVPSASL+ S GSR  S+SLNTANN SARPGLLH SFLPSSSLSCSS+FSGLSLGLDWS KIGVGQGKRRS VVRAGK  
Subjt:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKFL

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTT GRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
SwissProt top hitse value%identityAlignment
P82244 50S ribosomal protein L34, chloroplastic6.1e-3464.1Show/hide
Query:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFL-PSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF
        MA +S LS+  G    A+  R PSASL    GSR  +  + + N  SAR G LH SFL PSSSL  SS FSGLSLGLD +S  GV   + R FVVRAGK 
Subjt:  MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFL-PSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKF

Query:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
         LC TKR+RSRKSLARTHGFR RM TT+GRA+LKRRRAKGRK+LCTK+NPSSGKRA
Subjt:  LLCQTKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Q9LP37 50S ribosomal protein L34, chloroplastic1.8e-3061.18Show/hide
Query:  SALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKI-GVGQGKRRSFVVRAGKFLLCQ
        SA S  W  +     + VPSASL L  G R  S SL     +SA   LLH SFL SS +S +S FSGLS+  D SS+  G+   +RR  VVRAGK  LCQ
Subjt:  SALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKI-GVGQGKRRSFVVRAGKFLLCQ

Query:  TKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        TKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGKRA
Subjt:  TKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Arabidopsis top hitse value%identityAlignment
AT1G29070.1 Ribosomal protein L341.3e-3161.18Show/hide
Query:  SALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKI-GVGQGKRRSFVVRAGKFLLCQ
        SA S  W  +     + VPSASL L  G R  S SL     +SA   LLH SFL SS +S +S FSGLS+  D SS+  G+   +RR  VVRAGK  LCQ
Subjt:  SALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKI-GVGQGKRRSFVVRAGKFLLCQ

Query:  TKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        TKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGKRA
Subjt:  TKRNRSRKSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCAATTTCAGCATTATCCTCCCCATGGGGGGTTTCGACCGGAGCCATGGCGGTCCGAGTTCCTTCAGCCTCACTCCTACTCTCCGCCGGTTCAAGAATCCGCTC
TGTATCTCTAAATACTGCAAACAACACTTCCGCCCGTCCCGGACTGCTCCATTCCTCATTTCTTCCTTCTTCATCCCTTTCCTGTTCTTCAGCTTTTTCCGGTTTATCGT
TGGGTTTGGATTGGAGTTCTAAAATTGGGGTCGGACAAGGGAAGCGTCGGAGCTTTGTGGTTAGGGCTGGAAAGTTTTTACTTTGTCAGACTAAACGAAACAGGTCGCGT
AAATCCTTAGCTCGGACTCATGGTTTTCGCCGACGAATGCGAACCACCACTGGTAGAGCTGTTCTAAAGCGCAGACGTGCAAAGGGTAGGAAGGTTCTCTGCACAAAGTC
CAATCCAAGCAGCGGAAAGCGTGCTTAA
mRNA sequenceShow/hide mRNA sequence
CTCGTAGCAGAAAGGGGGAAACTCAAAACCAGAGTGCAACAATGGCAGCAATTTCAGCATTATCCTCCCCATGGGGGGTTTCGACCGGAGCCATGGCGGTCCGAGTTCCT
TCAGCCTCACTCCTACTCTCCGCCGGTTCAAGAATCCGCTCTGTATCTCTAAATACTGCAAACAACACTTCCGCCCGTCCCGGACTGCTCCATTCCTCATTTCTTCCTTC
TTCATCCCTTTCCTGTTCTTCAGCTTTTTCCGGTTTATCGTTGGGTTTGGATTGGAGTTCTAAAATTGGGGTCGGACAAGGGAAGCGTCGGAGCTTTGTGGTTAGGGCTG
GAAAGTTTTTACTTTGTCAGACTAAACGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGTTTTCGCCGACGAATGCGAACCACCACTGGTAGAGCTGTTCTAAAG
CGCAGACGTGCAAAGGGTAGGAAGGTTCTCTGCACAAAGTCCAATCCAAGCAGCGGAAAGCGTGCTTAAGTTTTCTTGCAAGACCATTTCTAGGTAAATTGGGCAATATT
GTCTAATTCACTCTTCGAATGATTGGTTAAGATAGCTTATTTATTAAATGATGTTCTGTTTTGTTATTGATTCATTTGAAAGTTTCTTAAACTCAAATTATCAATGTTAA
ATTCAAATGACTAGACTGTTCTAGTTTATTGTGATTGATGCTTTCGCATTGTCCATTTATAAATTTCTCTGAACTGTAATATGTACATCTACTAAAAGCCTGAGGTTTAT
TGTTATTGTTATTCATCAAA
Protein sequenceShow/hide protein sequence
MAAISALSSPWGVSTGAMAVRVPSASLLLSAGSRIRSVSLNTANNTSARPGLLHSSFLPSSSLSCSSAFSGLSLGLDWSSKIGVGQGKRRSFVVRAGKFLLCQTKRNRSR
KSLARTHGFRRRMRTTTGRAVLKRRRAKGRKVLCTKSNPSSGKRA