; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0006923 (gene) of Chayote v1 genome

Gene IDSed0006923
OrganismSechium edule (Chayote v1)
Descriptionpre-rRNA-processing protein TSR2 homolog
Genome locationLG12:5804034..5805467
RNA-Seq ExpressionSed0006923
SyntenySed0006923
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR019398 - Pre-rRNA-processing protein TSR2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134444.1 pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus]3.0e-4686.84Show/hide
Query:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        ME  +GL S+N KAGS S L+ AISSVFSRWDGLQMA+ENQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLQGSR

XP_008438674.1 PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo]3.9e-4686.84Show/hide
Query:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        ME  +GL S+N KAGS S L+ AISSVFSRWDGLQMA+ENQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLQGSR

XP_011650975.1 pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus]7.4e-4586.09Show/hide
Query:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIE-QVA
        ME  +GL S+N KAGS S L+ AISSVFSRWDGLQMA+ENQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIE QVA
Subjt:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIE-QVA

Query:  EQLMMIYEENLQGSR
        EQLMMIYEENL GSR
Subjt:  EQLMMIYEENLQGSR

XP_022137757.1 pre-rRNA-processing protein TSR2 homolog [Momordica charantia]1.1e-4889.47Show/hide
Query:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        ME ++GLAS+N KAGS SGL++AISSVFSRWDGLQMA++NQWGGRDSHQKSLNLASDVFSWFS+SKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
Subjt:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEE+LQGSR
Subjt:  QLMMIYEENLQGSR

XP_038881388.1 pre-rRNA-processing protein TSR2 homolog [Benincasa hispida]1.3e-4686.84Show/hide
Query:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        ME+ +GL S+N KAGS S L+ AISSVFSRWDGLQMA+ENQWGGRDSHQKSLNLASDVF+WFSQSKPPLYVEDLE LLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLQGSR

TrEMBL top hitse value%identityAlignment
A0A0A0L7I9 Uncharacterized protein1.5e-4686.84Show/hide
Query:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        ME  +GL S+N KAGS S L+ AISSVFSRWDGLQMA+ENQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLQGSR

A0A1S3AWZ6 pre-rRNA-processing protein TSR2 homolog isoform X21.9e-4686.84Show/hide
Query:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        ME  +GL S+N KAGS S L+ AISSVFSRWDGLQMA+ENQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLQGSR

A0A1S3AX32 pre-rRNA-processing protein TSR2 isoform X14.7e-4586.09Show/hide
Query:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIE-QVA
        ME  +GL S+N KAGS S L+ AISSVFSRWDGLQMA+ENQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIE QVA
Subjt:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIE-QVA

Query:  EQLMMIYEENLQGSR
        EQLMMIYEENL GSR
Subjt:  EQLMMIYEENLQGSR

A0A5D3D3A3 Pre-rRNA-processing protein TSR2-like protein isoform X21.9e-4686.84Show/hide
Query:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        ME  +GL S+N KAGS S L+ AISSVFSRWDGLQMA+ENQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLQGSR

A0A6J1C959 pre-rRNA-processing protein TSR2 homolog5.3e-4989.47Show/hide
Query:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        ME ++GLAS+N KAGS SGL++AISSVFSRWDGLQMA++NQWGGRDSHQKSLNLASDVFSWFS+SKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
Subjt:  MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEE+LQGSR
Subjt:  QLMMIYEENLQGSR

SwissProt top hitse value%identityAlignment
Q06672 Pre-rRNA-processing protein TSR27.8e-0531.58Show/hide
Query:  ISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGSRSNVE
        +S V  +WD L +AVEN WGG DS +K   +   V   F   K  +    +E  L  +++  F T +ED S   +A +++ IY +    + + VE
Subjt:  ISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGSRSNVE

Q3KRG3 Pre-rRNA-processing protein TSR2 homolog9.2e-0630.53Show/hide
Query:  AISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGSRSNV
        A+ +V   W  LQ+AV+N +GG  S QK+  +   +  +F+ +   L  +++E+ + E +   F+T ++DGS+ QVA+Q+  ++++  QG  + V
Subjt:  AISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGSRSNV

Q3T090 Pre-rRNA-processing protein TSR2 homolog2.9e-0732.98Show/hide
Query:  SAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGSRS
        +A+ +    W  LQ+AVEN +GG  S +K+  L   V  +F ++   L ++++E+ L E ++  F+T +EDGS+ QV++QL  ++    +G R+
Subjt:  SAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGSRS

Q8C8T8 Pre-rRNA-processing protein TSR2 homolog4.9e-0734.07Show/hide
Query:  SAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQG
        +A+ +    W  LQ+AVEN +GG  S +K+  L   V  +F  +   L +E++E+ L E +   F+T +EDGS+ QV++QL  ++    +G
Subjt:  SAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQG

Q969E8 Pre-rRNA-processing protein TSR2 homolog1.1e-0632.61Show/hide
Query:  KSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQG
        ++ + +    W  LQ+AVEN +GG  S +K+  L   V  +F ++   L ++++E+ L E L   F+T +EDGS+ QV++QL  ++    +G
Subjt:  KSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQG

Arabidopsis top hitse value%identityAlignment
AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region3.7e-2663.54Show/hide
Query:  SGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGS
        S L+  I  + SRW GLQMAV+NQWGG DS +KS  LA ++F   SQS   + VE++ENLLHESLLLSFNTEIEDGSIE+VAEQLM+++EE+L+G+
Subjt:  SGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGS

AT5G27990.1 Pre-rRNA-processing protein TSR2, conserved region4.7e-1341.58Show/hide
Query:  LKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENL--LHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGSRSNV
        LK  I  +  RW  ++ AVEN WGGRDS  K+    + VF +F QSK P  V+D+E L  L +  L   NT  EDGS+++VA  L+ +YE+   G+   +
Subjt:  LKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENL--LHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGSRSNV

Query:  E
        E
Subjt:  E


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCGACGAATGGATTGGCCTCAAGCAATTGCAAGGCGGGATCAACATCCGGCCTTAAATCGGCGATTTCGTCGGTGTTTTCTCGGTGGGACGGGCTTCAAATGGC
CGTTGAAAACCAATGGGGCGGCCGCGATTCGCACCAGAAATCTCTGAATCTGGCCTCTGATGTGTTCTCTTGGTTCTCCCAATCCAAACCTCCCCTGTATGTGGAAGATC
TGGAAAATTTGCTCCATGAAAGCTTGTTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAGCAATTGATGATGATTTACGAAGAAAATTTG
CAGGGAAGTCGTTCGAATGTAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCGACGAATGGATTGGCCTCAAGCAATTGCAAGGCGGGATCAACATCCGGCCTTAAATCGGCGATTTCGTCGGTGTTTTCTCGGTGGGACGGGCTTCAAATGGC
CGTTGAAAACCAATGGGGCGGCCGCGATTCGCACCAGAAATCTCTGAATCTGGCCTCTGATGTGTTCTCTTGGTTCTCCCAATCCAAACCTCCCCTGTATGTGGAAGATC
TGGAAAATTTGCTCCATGAAAGCTTGTTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAGCAATTGATGATGATTTACGAAGAAAATTTG
CAGGGAAGTCGTTCGAATGTAGAATAA
Protein sequenceShow/hide protein sequence
MEATNGLASSNCKAGSTSGLKSAISSVFSRWDGLQMAVENQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENL
QGSRSNVE