CuGenDBv2

Gene ID	Sed0006938
Organism	Sechium edule (Chayote v1)
Description	ribosomal RNA-processing protein 17
Genome location	LG10:1978752..1982060
RNA-Seq Expression	Sed0006938
Synteny	Sed0006938
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6594625.1 hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-69

81.82

Show/hide

Query:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND
        M K E EEGG LTQP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RKKRK+EK+LVLHGGVLP DRPVDEQND
Subjt:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND

Query:  DHVGEDEDEE--PLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK
        D    DEDEE  PLAPISETTTYDSGNIKVTVTTSEV R+EEI+P DKP  +T+QL AKDKKH+LPVTKKK  KKVAR+KS+ K RSK DK+KG KKK
Subjt:  DHVGEDEDEE--PLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK

KAG7026594.1 hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.3e-70

82.32

Show/hide

Query:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND
        M K E EEGG LTQP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RKKRK+EK+LVLHGGVLP DRPVDEQND
Subjt:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND

Query:  DHVGEDEDEE--PLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK
        D    DEDEE  PLAPISETTTYDSGNIKVTVTTSEV R+EEIDP DKP  +T+QL AKDKKH+LPVTKKK  KKVAR+KS+ K RSK DK+KG KKK
Subjt:  DHVGEDEDEE--PLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK

XP_022926799.1 ribosomal RNA-processing protein 17 [Cucurbita moschata]

1.2e-69

81.31

Show/hide

Query:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND
        M K E EEGG LTQP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RKKRK+EKDLVLHGGVLP DRPVDEQND
Subjt:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND

Query:  D--HVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK
        D     EDE+E+PLAPISETT YDSGNIKVTVTTSEV R+EEIDP DKP  +T+QL AKDKKH+LP+TKKK  KKVAR+KS+ K RSK DK+KG KKK
Subjt:  D--HVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

5.3e-70

81.82

Show/hide

Query:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND
        M K E EEGG LTQP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RKKRK+EK+LVLHGGVLP DRPVDEQND
Subjt:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND

Query:  D--HVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK
        D     EDE+E+PLAPISETTTYDSGNIKVTVTTSEV R+EEIDP DKP  +T+QL AKDKKH+LPVTKKK  KKVAR+KS+ K RSK DK+KG KKK
Subjt:  D--HVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]

2.8e-71

81.31

Show/hide

Query:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND
        M + + EEG EL QP ARHIKKRAL+NKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQQEEA+RRKRIE RKKR+LEKDLVL+GGVLP DRPVDE+ND
Subjt:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND

Query:  DHV--GEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK
        DH    EDE+E+PLAP SETTTYDSGNIKVTV TSEV REEEIDP DKP  AT QLFAKDKKHNLPVTKKK  KKVA+Q+S+PK RSKRDKRKG KKK
Subjt:  DHV--GEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

3.1e-68

77.78

Show/hide

Query:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND
        M K + EEGGEL QP ARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA+RR RIE RKKRKLEKDLVLHGGVLP DR VD+QND
Subjt:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND

Query:  DHVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP----ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK
        D    +E+EEPLAP+SE TTYD+GN+KVTVTTSEV RE+EIDP DKP     T QL  KDKKHNLP+TKKKL KKVA+Q+ +PK RSKRDK+KG KKK
Subjt:  DHVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP----ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK

A0A1S3C1A3 ribosomal RNA-processing protein 17

1.8e-68

79.59

Show/hide

Query:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND
        M K + EEGGEL QP ARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA+RR RIE RKKRKLEKDLVL+GGVLP DR VD+QND
Subjt:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND

Query:  DHVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKPAT--NQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK
        D   EDE+EEPLAP SE  TYD+GN+KVTVTTSEV RE EIDP DKP T   QL  KDKKHNLP+TKKKL KKVA+Q+S+PK RSKRDK+KG KKK
Subjt:  DHVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKPAT--NQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

2.2e-69

80.1

Show/hide

Query:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND
        M K + +EGGEL QPR RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE+RKKRK EK+LVL+GG+LP DRPVDEQND
Subjt:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND

Query:  DHVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDK--PATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK
        DH  E+E+E+P APISETTTYDSGNIKVTV TSEV R+ EI P DK   AT QL AKDKKHNLP+TKKK  KKVA+QKS+PKPRSKRDK+KG KKK
Subjt:  DHVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDK--PATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK

A0A6J1EG67 ribosomal RNA-processing protein 17

5.7e-70

81.31

Show/hide

Query:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND
        M K E EEGG LTQP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RKKRK+EKDLVLHGGVLP DRPVDEQND
Subjt:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND

Query:  D--HVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK
        D     EDE+E+PLAPISETT YDSGNIKVTVTTSEV R+EEIDP DKP  +T+QL AKDKKH+LP+TKKK  KKVAR+KS+ K RSK DK+KG KKK
Subjt:  D--HVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

1.3e-69

80.81

Show/hide

Query:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND
        M K E  EGG LTQP +RH+KK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RKKRK+EKDLVLHGGVLP DRPVDEQND
Subjt:  MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQND

Query:  D--HVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK
        D     EDE+E+PLAPISETTTYDSGNIKVTVTTSEV REEEIDP DKP  +T+QL AKDKKH+LP+TKKK  KKVAR+KS+ K RSK DK+KG KKK
Subjt:  D--HVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

2.5e-33

53.72

Show/hide

Query:  EEGGELTQP-RARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDDHVGE
        EE G L  P  ARHI KRA KNK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA RRKRIE RK RKLE+ +V   G   +D    E  D+   E
Subjt:  EEGGELTQP-RARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDDHVGE

Query:  DEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEE----IDPTDKPATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRK
        DE+ EP A  S TT YD+G +KVTVTTSE+ REEE     + T    +        K  +PV K K +K+ +R++S  K   KRDK+K
Subjt:  DEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEE----IDPTDKPATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGAAGAAAGAAACCGAGGAAGGGGGCGAGCTCACACAACCTCGCGCTCGACACATCAAGAAAAGAGCTCTCAAGAACAAAGCCCTTTCCGTCTCTTTCAATGAGAA
AGATTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCCGAGAAGCAACAAGAGGAAGCTCTTCGCCGGAAGCGCATCGAAATACGCA
AAAAGAGAAAATTAGAAAAAGATCTGGTGCTACATGGCGGTGTTCTACCCGATGACCGCCCAGTTGATGAGCAGAATGACGATCACGTGGGCGAGGATGAGGATGAGGAG
CCATTGGCACCAATTTCTGAGACAACAACGTATGACAGTGGAAATATCAAAGTGACTGTGACGACAAGTGAGGTATGTCGTGAAGAAGAAATCGATCCGACTGACAAGCC
AGCAACAAACCAACTGTTTGCAAAGGATAAGAAGCACAACCTGCCAGTTACCAAAAAGAAGCTGTTGAAGAAAGTTGCAAGACAGAAGTCAAAGCCAAAGCCCCGAAGTA
AAAGAGACAAAAGGAAAGGAGGAAAAAAGAAAAATAGTTGTCGAACAAAAAAGACATTCAGGCTACATAAATACACATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDDHVGEDEDEE
PLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKPATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKKNSCRTKKTFRLHKYT

Sed0006938 (gene) of Chayote v1 genome