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Sed0006942 (gene) of Chayote v1 genome

Gene IDSed0006942
OrganismSechium edule (Chayote v1)
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
Genome locationContig00298_ERROPOS2519015:46775..47062
RNA-Seq ExpressionSed0006942
SyntenySed0006942
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584197.1 hypothetical protein SDJN03_20129, partial [Cucurbita argyrosperma subsp. sororia]3.5e-1346.77Show/hide
Query:  MKKKPHLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLDG----
        MK KP ++ D D HLEILKA AQAW S TG +  A    A RR+C  NPSRFK+EA+R R                  +EI+AV K LE  LVLDG    
Subjt:  MKKKPHLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLDG----

Query:  ---GGRFHRSRRRLRCNGLRNLFN
           GG  ++ ++R  CN LRNLFN
Subjt:  ---GGRFHRSRRRLRCNGLRNLFN

XP_011651756.1 uncharacterized protein LOC105434938 [Cucumis sativus]4.6e-1348.44Show/hide
Query:  MKKKP--HLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLD---
        MKKKP  H   D DRHLEILKA AQAWHS TG +  A    A RR+    PSRFK+EA+R R                  +EI+ V K LE  LVLD   
Subjt:  MKKKP--HLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLD---

Query:  ------GGGRFHRSRRRLRCNGLRNLFN
              GGGR  R RR   CN LRNLFN
Subjt:  ------GGGRFHRSRRRLRCNGLRNLFN

XP_022923731.1 uncharacterized protein LOC111431350 [Cucurbita moschata]3.5e-1346.77Show/hide
Query:  MKKKPHLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLDG----
        MK KP ++ D D HLEILKA AQAW S TG +  A    A RR+C  NPSRFK+EA+R R                  +EI+AV K LE  LVLDG    
Subjt:  MKKKPHLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLDG----

Query:  ---GGRFHRSRRRLRCNGLRNLFN
           GG  ++ ++R  CN LRNLFN
Subjt:  ---GGRFHRSRRRLRCNGLRNLFN

XP_023519325.1 uncharacterized protein LOC111782756 [Cucurbita pepo subsp. pepo]3.5e-1346.77Show/hide
Query:  MKKKPHLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLDG----
        MK KP ++ D D HLEILKA AQAW S TG +  A    A RR+C  NPSRFK+EA+R R                  +EI+AV K LE  LVLDG    
Subjt:  MKKKPHLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLDG----

Query:  ---GGRFHRSRRRLRCNGLRNLFN
           GG  ++ ++R  CN LRNLFN
Subjt:  ---GGRFHRSRRRLRCNGLRNLFN

XP_038894267.1 uncharacterized protein LOC120082919 [Benincasa hispida]2.1e-1348.41Show/hide
Query:  MKKKPHLQVDGD-RHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR-----------------WEILAVCKMLERELVLD-----
        MKKKP LQ D D RHLEILKA AQAWHS TG++  A    A RR+    PSRFK+EA+R R                 +EI+ V K LE  LVLD     
Subjt:  MKKKPHLQVDGD-RHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR-----------------WEILAVCKMLERELVLD-----

Query:  ----GGGRFHRSRRRLRCNGLRNLFN
            GGGR  R +R   CN LRNLF+
Subjt:  ----GGGRFHRSRRRLRCNGLRNLFN

TrEMBL top hitse value%identityAlignment
A0A0A0LTM3 Uncharacterized protein2.2e-1348.44Show/hide
Query:  MKKKP--HLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLD---
        MKKKP  H   D DRHLEILKA AQAWHS TG +  A    A RR+    PSRFK+EA+R R                  +EI+ V K LE  LVLD   
Subjt:  MKKKP--HLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLD---

Query:  ------GGGRFHRSRRRLRCNGLRNLFN
              GGGR  R RR   CN LRNLFN
Subjt:  ------GGGRFHRSRRRLRCNGLRNLFN

A0A1S3AX17 uncharacterized protein LOC1034838292.9e-1347.66Show/hide
Query:  MKKKP--HLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLD---
        MKKKP  H   D DRHLEILKA AQAWH+ TG +  A    A RR+    PSRFK+EA+R R                  +EI+ V K LE  LVLD   
Subjt:  MKKKP--HLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLD---

Query:  ------GGGRFHRSRRRLRCNGLRNLFN
              GGGR  R RR   CN LRNLFN
Subjt:  ------GGGRFHRSRRRLRCNGLRNLFN

A0A5A7UNW1 Uncharacterized protein2.9e-1347.66Show/hide
Query:  MKKKP--HLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLD---
        MKKKP  H   D DRHLEILKA AQAWH+ TG +  A    A RR+    PSRFK+EA+R R                  +EI+ V K LE  LVLD   
Subjt:  MKKKP--HLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLD---

Query:  ------GGGRFHRSRRRLRCNGLRNLFN
              GGGR  R RR   CN LRNLFN
Subjt:  ------GGGRFHRSRRRLRCNGLRNLFN

A0A6J1C5Z6 uncharacterized protein LOC1110087161.1e-1245.74Show/hide
Query:  MKKKPHLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR---------------------WEILAVCKMLERELVL---
        MKKKP ++ D  RHLEILKA AQAWHS TG++  A    A RR+C G PSRFK+EA+R R                     +EI+ V K LE  LVL   
Subjt:  MKKKPHLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR---------------------WEILAVCKMLERELVL---

Query:  -----DGGGRFHRSRRRLRC-NGLRNLFN
             DGGGR    R+     N LRNLFN
Subjt:  -----DGGGRFHRSRRRLRC-NGLRNLFN

A0A6J1E7J5 uncharacterized protein LOC1114313501.7e-1346.77Show/hide
Query:  MKKKPHLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLDG----
        MK KP ++ D D HLEILKA AQAW S TG +  A    A RR+C  NPSRFK+EA+R R                  +EI+AV K LE  LVLDG    
Subjt:  MKKKPHLQVDGDRHLEILKAAAQAWHSRTGATGVA----ARRRSCSGNPSRFKMEAMRCR------------------WEILAVCKMLERELVLDG----

Query:  ---GGRFHRSRRRLRCNGLRNLFN
           GG  ++ ++R  CN LRNLFN
Subjt:  ---GGRFHRSRRRLRCNGLRNLFN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAAACCGCACCTCCAAGTCGACGGCGATCGCCATCTCGAGATCCTCAAGGCGGCGGCTCAGGCTTGGCACAGCCGCACCGGCGCAACTGGAGTCGCCGCCCG
TCGCCGGAGTTGCTCGGGAAATCCGTCTCGCTTCAAGATGGAGGCTATGCGGTGCCGGTGGGAGATTCTGGCGGTCTGCAAGATGCTCGAGCGGGAGCTGGTGCTCGACG
GCGGCGGGCGATTTCACCGGTCACGGCGGCGTCTGAGATGTAATGGTTTGAGGAATTTGTTTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGAAACCGCACCTCCAAGTCGACGGCGATCGCCATCTCGAGATCCTCAAGGCGGCGGCTCAGGCTTGGCACAGCCGCACCGGCGCAACTGGAGTCGCCGCCCG
TCGCCGGAGTTGCTCGGGAAATCCGTCTCGCTTCAAGATGGAGGCTATGCGGTGCCGGTGGGAGATTCTGGCGGTCTGCAAGATGCTCGAGCGGGAGCTGGTGCTCGACG
GCGGCGGGCGATTTCACCGGTCACGGCGGCGTCTGAGATGTAATGGTTTGAGGAATTTGTTTAATTAG
Protein sequenceShow/hide protein sequence
MKKKPHLQVDGDRHLEILKAAAQAWHSRTGATGVAARRRSCSGNPSRFKMEAMRCRWEILAVCKMLERELVLDGGGRFHRSRRRLRCNGLRNLFN