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Sed0006952 (gene) of Chayote v1 genome

Gene IDSed0006952
OrganismSechium edule (Chayote v1)
DescriptionC2H2-like zinc finger protein
Genome locationLG05:1102910..1103383
RNA-Seq ExpressionSed0006952
SyntenySed0006952
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606329.1 Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. sororia]6.4e-5270.62Show/hide
Query:  SKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSS---PPLVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQ
        +++S+VEMEETPSRIFPCLFCSRKFQ+SQALGGHQNAHKKER+A RK +RI+DY+SSS+   P  VFA   Q  HP +LP +PMYIAAHGA+LHCFPN+Q
Subjt:  SKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSS---PPLVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQ

Query:  QLFYDGFG-GPNFENMVYYGGVCSSDRYQCGEDEKNVL----KLDHGKEKEQKLDLSLHL
        Q+FYDG G  P FE+MVYYGGVCS +RYQCGEDE++VL     +   KEKEQKLDLSLHL
Subjt:  QLFYDGFG-GPNFENMVYYGGVCSSDRYQCGEDEKNVL----KLDHGKEKEQKLDLSLHL

XP_022931139.1 protein LATE FLOWERING [Cucurbita moschata]3.7e-5269.94Show/hide
Query:  SKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSS------PPLVFAA--QHPHPTLLPQYPMYIAAHGANLHCFP
        +++S+VEMEETPSRIFPCLFCSRKFQ+SQALGGHQNAHKKER+A RK +R++DY+SSSS      P  VFA   Q  HP +LP +P+YIAAHGANLHCFP
Subjt:  SKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSS------PPLVFAA--QHPHPTLLPQYPMYIAAHGANLHCFP

Query:  NNQQLFYDGFG-GPNFENMVYYGGVCSSDRYQCGEDEKNVL----KLDHGKEKEQKLDLSLHL
        NNQQ+FYDG G  P FE+MVYYGGVCS +RYQCGEDE +VL     +   KEKEQKLDLSLHL
Subjt:  NNQQLFYDGFG-GPNFENMVYYGGVCSSDRYQCGEDEKNVL----KLDHGKEKEQKLDLSLHL

XP_022996351.1 protein LATE FLOWERING-like [Cucurbita maxima]1.7e-5271.25Show/hide
Query:  SKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSS---PPLVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQ
        +++S+VEMEETPSRIFPCLFCSRKFQ+SQALGGHQNAHKKER+A RK +RI+DY+SSS+   P  VFA   Q  HP +LP +PMYIAAHG NLHCFPN+Q
Subjt:  SKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSS---PPLVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQ

Query:  QLFYDGFG-GPNFENMVYYGGVCSSDRYQCGEDEKNVL----KLDHGKEKEQKLDLSLHL
        Q+FYDG G  P FE+MVYYGGVCS +RYQCGEDE+NVL     +   KEKEQKLDLSLHL
Subjt:  QLFYDGFG-GPNFENMVYYGGVCSSDRYQCGEDEKNVL----KLDHGKEKEQKLDLSLHL

XP_023532770.1 protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]1.7e-5271.25Show/hide
Query:  SKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSS---PPLVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQ
        +++S+VEMEETPSRIFPCLFCSRKFQ+SQALGGHQNAHKKER+A RK +RI+DY+SSS+   P  VFA   Q  HP +LP +PMYIAAHGANLHCFPN+Q
Subjt:  SKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSS---PPLVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQ

Query:  QLFYDGFG-GPNFENMVYYGGVCSSDRYQCGEDEKNVL----KLDHGKEKEQKLDLSLHL
        Q+FYDG G  P FE+MVYYGGVCS +RYQCGEDE++VL     +   KEKEQKLDLSLHL
Subjt:  QLFYDGFG-GPNFENMVYYGGVCSSDRYQCGEDEKNVL----KLDHGKEKEQKLDLSLHL

XP_038888938.1 protein LATE FLOWERING [Benincasa hispida]2.3e-4662.64Show/hide
Query:  DSKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASS-SSPP--------LVFAAQHP--HPTLLPQYPMYIAAHGANL
        ++  + VEMEETP+R+FPCLFCSRKFQSSQALGGHQNAHKKER+AARK +RI+DY+++ SSPP        LVF A H   HP LLPQ P+YIA HG NL
Subjt:  DSKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASS-SSPP--------LVFAAQHP--HPTLLPQYPMYIAAHGANL

Query:  HCFPNNQQLFYDGFGGPNFENMVYYGGVCSSDRY-QCGEDEKNVL-----------KLDHGKEKEQKLDLSLHL
        HCFPNNQQL Y        ENMVY GGVC+S+RY QCG DE+N+L           +++H KEKEQKLDLSLHL
Subjt:  HCFPNNQQLFYDGFGGPNFENMVYYGGVCSSDRY-QCGEDEKNVL-----------KLDHGKEKEQKLDLSLHL

TrEMBL top hitse value%identityAlignment
A0A0A0LE19 C2H2-type domain-containing protein8.4e-4262.96Show/hide
Query:  MEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPP------LVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQQLFY
        MEE PSR+FPCLFCSRKFQSSQALGGHQNAHKKER+AARK +RI DY+ S   P      LVFAA  Q  HP LLP +P+YIA HGANLHCFPNNQQL Y
Subjt:  MEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPP------LVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQQLFY

Query:  DGFGGPNFENMVYYGGVCSSDRYQCGEDEKNVL-----------KLDHGKEKEQKLDLSLHL
                ENMV+ GGVC S+RY   +DE+N+L           +++H KEKEQKLDLSLHL
Subjt:  DGFGGPNFENMVYYGGVCSSDRYQCGEDEKNVL-----------KLDHGKEKEQKLDLSLHL

A0A1S3BIU8 protein LATE FLOWERING-like3.4e-4362.8Show/hide
Query:  VEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPP------LVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQQL
        +EMEETPSR+FPCLFCSRKFQSSQALGGHQNAHKKER+AARK +RI DY+ S   P      LVFAA  Q  HP  L  +P+YIA HGANLHCFPNNQQL
Subjt:  VEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPP------LVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQQL

Query:  FYDGFGGPNFENMVYYGGVCSSDRYQCGEDEKNVL-----------KLDHGKEKEQKLDLSLHL
         Y        ENMV+ GGVCSS+RY   +DE+N+L           +++H KEKEQKLDLSLHL
Subjt:  FYDGFGGPNFENMVYYGGVCSSDRYQCGEDEKNVL-----------KLDHGKEKEQKLDLSLHL

A0A5A7VIQ7 Protein LATE FLOWERING-like2.2e-4262.96Show/hide
Query:  MEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPP------LVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQQLFY
        MEETPSR+FPCLFCSRKFQSSQALGGHQNAHKKER+AARK +RI DY+ S   P      LVFAA  Q  HP  L  +P+YIA HGANLHCFPNNQQL Y
Subjt:  MEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPP------LVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQQLFY

Query:  DGFGGPNFENMVYYGGVCSSDRYQCGEDEKNVL-----------KLDHGKEKEQKLDLSLHL
                ENMV+ GGVCSS+RY   +DE+N+L           +++H KEKEQKLDLSLHL
Subjt:  DGFGGPNFENMVYYGGVCSSDRYQCGEDEKNVL-----------KLDHGKEKEQKLDLSLHL

A0A6J1ETH7 protein LATE FLOWERING1.8e-5269.94Show/hide
Query:  SKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSS------PPLVFAA--QHPHPTLLPQYPMYIAAHGANLHCFP
        +++S+VEMEETPSRIFPCLFCSRKFQ+SQALGGHQNAHKKER+A RK +R++DY+SSSS      P  VFA   Q  HP +LP +P+YIAAHGANLHCFP
Subjt:  SKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSS------PPLVFAA--QHPHPTLLPQYPMYIAAHGANLHCFP

Query:  NNQQLFYDGFG-GPNFENMVYYGGVCSSDRYQCGEDEKNVL----KLDHGKEKEQKLDLSLHL
        NNQQ+FYDG G  P FE+MVYYGGVCS +RYQCGEDE +VL     +   KEKEQKLDLSLHL
Subjt:  NNQQLFYDGFG-GPNFENMVYYGGVCSSDRYQCGEDEKNVL----KLDHGKEKEQKLDLSLHL

A0A6J1K4H5 protein LATE FLOWERING-like8.1e-5371.25Show/hide
Query:  SKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSS---PPLVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQ
        +++S+VEMEETPSRIFPCLFCSRKFQ+SQALGGHQNAHKKER+A RK +RI+DY+SSS+   P  VFA   Q  HP +LP +PMYIAAHG NLHCFPN+Q
Subjt:  SKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSS---PPLVFAA--QHPHPTLLPQYPMYIAAHGANLHCFPNNQ

Query:  QLFYDGFG-GPNFENMVYYGGVCSSDRYQCGEDEKNVL----KLDHGKEKEQKLDLSLHL
        Q+FYDG G  P FE+MVYYGGVCS +RYQCGEDE+NVL     +   KEKEQKLDLSLHL
Subjt:  QLFYDGFG-GPNFENMVYYGGVCSSDRYQCGEDEKNVL----KLDHGKEKEQKLDLSLHL

SwissProt top hitse value%identityAlignment
Q39261 Zinc finger protein 23.4e-0853.57Show/hide
Query:  NSYLDSKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRI
        +S   S T++    E P R+F C +C RKF SSQALGGHQNAHK ER+ A+K+R +
Subjt:  NSYLDSKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRI

Q39262 Zinc finger protein 34.1e-0937.04Show/hide
Query:  LDSKTS--NVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPPLVFAAQHPHPTLLPQYPMYIAAHGANLHCFPNNQQ
        +D  TS  N     T  ++F C +C R F SSQALGGHQNAHK+ER+ A++ +R+   AS+   P  F+    H        + I AH        +++ 
Subjt:  LDSKTS--NVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPPLVFAAQHPHPTLLPQYPMYIAAHGANLHCFPNNQQ

Query:  LFYDGFGG
          Y+GFGG
Subjt:  LFYDGFGG

Q39263 Zinc finger protein 44.5e-0850Show/hide
Query:  SKTSNVEMEE-----TPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRI
        S++SN E ++        R+F C +C RKF SSQALGGHQNAHK+ER+ A++  R+
Subjt:  SKTSNVEMEE-----TPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRI

Q9FFX4 Zinc finger protein KNUCKLES1.2e-0847.76Show/hide
Query:  RIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPPLVFAAQHPHPTLLPQYPMY
        R+FPC +C RKF +SQALGGHQNAHK+ER+AAR+   +     ++SPP++      + T L  YP +
Subjt:  RIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPPLVFAAQHPHPTLLPQYPMY

Q9FKA9 Protein LATE FLOWERING2.8e-1840.12Show/hide
Query:  SKTSNVEMEETPS-RIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSS----SPPLVFAAQHPHPTLLPQYPMYIAAHGANLHCFPN--
        SK +N   E T S RIFPCLFCSRKF SSQALGGHQNAHKKER+AAR+ +R  D+ +++    + P+  ++   H   +  YP       A++ CFP   
Subjt:  SKTSNVEMEETPS-RIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSS----SPPLVFAAQHPHPTLLPQYPMYIAAHGANLHCFPN--

Query:  -NQQLFYDGFG----GPNFENMVYYGGVCSSDRYQCGEDEKNVLKLDHGKEKEQKLDLSLHL
         +  +F           + +     GG C   R    +   NV+  D G  K+Q LDLSLHL
Subjt:  -NQQLFYDGFG----GPNFENMVYYGGVCSSDRYQCGEDEKNVLKLDHGKEKEQKLDLSLHL

Arabidopsis top hitse value%identityAlignment
AT1G66140.1 zinc finger protein 43.2e-0950Show/hide
Query:  SKTSNVEMEE-----TPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRI
        S++SN E ++        R+F C +C RKF SSQALGGHQNAHK+ER+ A++  R+
Subjt:  SKTSNVEMEE-----TPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRI

AT5G14010.1 C2H2 and C2HC zinc fingers superfamily protein8.4e-1047.76Show/hide
Query:  RIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPPLVFAAQHPHPTLLPQYPMY
        R+FPC +C RKF +SQALGGHQNAHK+ER+AAR+   +     ++SPP++      + T L  YP +
Subjt:  RIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPPLVFAAQHPHPTLLPQYPMY

AT5G25160.1 zinc finger protein 32.9e-1037.04Show/hide
Query:  LDSKTS--NVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPPLVFAAQHPHPTLLPQYPMYIAAHGANLHCFPNNQQ
        +D  TS  N     T  ++F C +C R F SSQALGGHQNAHK+ER+ A++ +R+   AS+   P  F+    H        + I AH        +++ 
Subjt:  LDSKTS--NVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPPLVFAAQHPHPTLLPQYPMYIAAHGANLHCFPNNQQ

Query:  LFYDGFGG
          Y+GFGG
Subjt:  LFYDGFGG

AT5G48890.1 C2H2-like zinc finger protein2.0e-1940.12Show/hide
Query:  SKTSNVEMEETPS-RIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSS----SPPLVFAAQHPHPTLLPQYPMYIAAHGANLHCFPN--
        SK +N   E T S RIFPCLFCSRKF SSQALGGHQNAHKKER+AAR+ +R  D+ +++    + P+  ++   H   +  YP       A++ CFP   
Subjt:  SKTSNVEMEETPS-RIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSS----SPPLVFAAQHPHPTLLPQYPMYIAAHGANLHCFPN--

Query:  -NQQLFYDGFG----GPNFENMVYYGGVCSSDRYQCGEDEKNVLKLDHGKEKEQKLDLSLHL
         +  +F           + +     GG C   R    +   NV+  D G  K+Q LDLSLHL
Subjt:  -NQQLFYDGFG----GPNFENMVYYGGVCSSDRYQCGEDEKNVLKLDHGKEKEQKLDLSLHL

AT5G57520.1 zinc finger protein 22.4e-0953.57Show/hide
Query:  NSYLDSKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRI
        +S   S T++    E P R+F C +C RKF SSQALGGHQNAHK ER+ A+K+R +
Subjt:  NSYLDSKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATTCATATTTGGATTCCAAAACAAGCAATGTTGAAATGGAAGAAACCCCATCAAGAATTTTCCCCTGTTTGTTCTGTTCAAGGAAGTTTCAAAGCTCTCAAGC
TTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGAGCGCCGCGAGGAAGACGAGGCGTATAACGGACTACGCCTCGTCTTCGTCACCGCCGTTGGTTTTTGCAGCCC
AACATCCTCATCCAACTCTATTGCCACAATATCCAATGTACATTGCAGCTCATGGGGCTAATCTTCATTGTTTCCCCAATAACCAACAATTGTTCTATGATGGATTTGGA
GGTCCCAATTTTGAGAACATGGTTTATTATGGTGGGGTTTGTTCAAGTGATAGATATCAATGTGGGGAAGATGAGAAAAATGTGCTGAAACTTGATCATGGCAAGGAAAA
AGAACAAAAACTTGATCTTTCTCTTCATTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAATTCATATTTGGATTCCAAAACAAGCAATGTTGAAATGGAAGAAACCCCATCAAGAATTTTCCCCTGTTTGTTCTGTTCAAGGAAGTTTCAAAGCTCTCAAGC
TTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGAGCGCCGCGAGGAAGACGAGGCGTATAACGGACTACGCCTCGTCTTCGTCACCGCCGTTGGTTTTTGCAGCCC
AACATCCTCATCCAACTCTATTGCCACAATATCCAATGTACATTGCAGCTCATGGGGCTAATCTTCATTGTTTCCCCAATAACCAACAATTGTTCTATGATGGATTTGGA
GGTCCCAATTTTGAGAACATGGTTTATTATGGTGGGGTTTGTTCAAGTGATAGATATCAATGTGGGGAAGATGAGAAAAATGTGCTGAAACTTGATCATGGCAAGGAAAA
AGAACAAAAACTTGATCTTTCTCTTCATTTGTAA
Protein sequenceShow/hide protein sequence
MGNSYLDSKTSNVEMEETPSRIFPCLFCSRKFQSSQALGGHQNAHKKERSAARKTRRITDYASSSSPPLVFAAQHPHPTLLPQYPMYIAAHGANLHCFPNNQQLFYDGFG
GPNFENMVYYGGVCSSDRYQCGEDEKNVLKLDHGKEKEQKLDLSLHL