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Sed0006977 (gene) of Chayote v1 genome

Gene IDSed0006977
OrganismSechium edule (Chayote v1)
Descriptioncleavage stimulation factor subunit 77
Genome locationLG14:9698520..9703617
RNA-Seq ExpressionSed0006977
SyntenySed0006977
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0031123 - RNA 3'-end processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR003107 - HAT (Half-A-TPR) repeat
IPR008847 - Suppressor of forked
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595463.1 Cleavage stimulation factor subunit 77, partial [Cucurbita argyrosperma subsp. sororia]5.8e-5781.43Show/hide
Query:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ
        K+AHN+FEDGM RFMNE++YILEYADFLARLNDD+NIRALFERALSTLPLEESTEVWKRFV FEQTYGDL SMLKVEK RKEA SQMG D ASTLESSLQ
Subjt:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ

Query:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI
        D+ SRYSFMDLWPCTSSDLDNLARQE +     K++   I
Subjt:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI

KAG7027463.1 Cleavage stimulation factor subunit 77 [Cucurbita argyrosperma subsp. argyrosperma]5.8e-5781.43Show/hide
Query:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ
        K+AHN+FEDGM RFMNE++YILEYADFLARLNDD+NIRALFERALSTLPLEESTEVWKRFV FEQTYGDL SMLKVEK RKEA SQMG D ASTLESSLQ
Subjt:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ

Query:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI
        D+ SRYSFMDLWPCTSSDLDNLARQE +     K++   I
Subjt:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI

XP_022925033.1 cleavage stimulation factor subunit 77 [Cucurbita moschata]5.8e-5781.43Show/hide
Query:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ
        K+AHN+FEDGM RFMNE++YILEYADFLARLNDD+NIRALFERALSTLPLEESTEVWKRFV FEQTYGDL SMLKVEK RKEA SQMG D ASTLESSLQ
Subjt:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ

Query:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI
        D+ SRYSFMDLWPCTSSDLDNLARQE +     K++   I
Subjt:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI

XP_022966187.1 cleavage stimulation factor subunit 77 [Cucurbita maxima]5.8e-5781.43Show/hide
Query:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ
        K+AHN+FEDGM RFMNE++YILEYADFLARLNDD+NIRALFERALSTLPLEESTEVWKRFV FEQTYGDL SMLKVEK RKEA SQMG D ASTLESSLQ
Subjt:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ

Query:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI
        D+ SRYSFMDLWPCTSSDLDNLARQE +     K++   I
Subjt:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI

XP_023518607.1 cleavage stimulation factor subunit 77 [Cucurbita pepo subsp. pepo]5.8e-5781.43Show/hide
Query:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ
        K+AHN+FEDGM RFMNE++YILEYADFLARLNDD+NIRALFERALSTLPLEESTEVWKRFV FEQTYGDL SMLKVEK RKEA SQMG D ASTLESSLQ
Subjt:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ

Query:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI
        D+ SRYSFMDLWPCTSSDLDNLARQE +     K++   I
Subjt:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI

TrEMBL top hitse value%identityAlignment
A0A1S4DUB4 cleavage stimulation factor subunit 77 isoform X21.4e-5683.09Show/hide
Query:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ
        K+AHNVFEDGM RFMNES+YILEYADFLARLNDD+NIRALFERALSTLPLEES EVWKRF+ FEQTYGDL SMLKVEK RKEA SQMG D ASTLESSLQ
Subjt:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ

Query:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSN
        DV SRYSFMDLWPCTSSDLDNL RQE +     K++
Subjt:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSN

A0A5A7TEI5 Cleavage stimulation factor subunit 77 isoform X21.4e-5683.09Show/hide
Query:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ
        K+AHNVFEDGM RFMNES+YILEYADFLARLNDD+NIRALFERALSTLPLEES EVWKRF+ FEQTYGDL SMLKVEK RKEA SQMG D ASTLESSLQ
Subjt:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ

Query:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSN
        DV SRYSFMDLWPCTSSDLDNL RQE +     K++
Subjt:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSN

A0A5D3C0Q9 Cleavage stimulation factor subunit 77 isoform X21.4e-5683.09Show/hide
Query:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ
        K+AHNVFEDGM RFMNES+YILEYADFLARLNDD+NIRALFERALSTLPLEES EVWKRF+ FEQTYGDL SMLKVEK RKEA SQMG D ASTLESSLQ
Subjt:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ

Query:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSN
        DV SRYSFMDLWPCTSSDLDNL RQE +     K++
Subjt:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSN

A0A6J1EAY7 cleavage stimulation factor subunit 772.8e-5781.43Show/hide
Query:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ
        K+AHN+FEDGM RFMNE++YILEYADFLARLNDD+NIRALFERALSTLPLEESTEVWKRFV FEQTYGDL SMLKVEK RKEA SQMG D ASTLESSLQ
Subjt:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ

Query:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI
        D+ SRYSFMDLWPCTSSDLDNLARQE +     K++   I
Subjt:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI

A0A6J1HMA9 cleavage stimulation factor subunit 772.8e-5781.43Show/hide
Query:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ
        K+AHN+FEDGM RFMNE++YILEYADFLARLNDD+NIRALFERALSTLPLEESTEVWKRFV FEQTYGDL SMLKVEK RKEA SQMG D ASTLESSLQ
Subjt:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ

Query:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI
        D+ SRYSFMDLWPCTSSDLDNLARQE +     K++   I
Subjt:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCI

SwissProt top hitse value%identityAlignment
P25991 Protein suppressor of forked4.5e-2039.1Show/hide
Query:  EKVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALST--LPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQM----GNDAAS
        +++A  +FE G+ RF     Y++ Y D+L+ LN+D N R LFER LS+  L   +S EVW RF+ FE   GDL S++KVE+ R   F  +    G + A 
Subjt:  EKVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALST--LPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQM----GNDAAS

Query:  TLESSLQDVASRYSFMDLWPCTSSDLDNLARQE
         ++        RY F+DL+PCTS++L ++   E
Subjt:  TLESSLQDVASRYSFMDLWPCTSSDLDNLARQE

Q12996 Cleavage stimulation factor subunit 31.8e-2142.54Show/hide
Query:  CDGEK-VAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALS--TLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAAS
        C  +K VA  +FE G+ ++ +   Y+L Y D+L+ LN+D N R LFER L+  +LP E+S E+W RF+ FE   GDL S+LKVEK R  AF +      +
Subjt:  CDGEK-VAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALS--TLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAAS

Query:  TLESSLQDVASRYSFMDLWPCTSSDLDNLARQEV
         L      +  RY FMDL+PC++S+L  L  ++V
Subjt:  TLESSLQDVASRYSFMDLWPCTSSDLDNLARQEV

Q5RDW9 Cleavage stimulation factor subunit 31.8e-2142.54Show/hide
Query:  CDGEK-VAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALS--TLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAAS
        C  +K VA  +FE G+ ++ +   Y+L Y D+L+ LN+D N R LFER L+  +LP E+S E+W RF+ FE   GDL S+LKVEK R  AF +      +
Subjt:  CDGEK-VAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALS--TLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAAS

Query:  TLESSLQDVASRYSFMDLWPCTSSDLDNLARQEV
         L      +  RY FMDL+PC++S+L  L  ++V
Subjt:  TLESSLQDVASRYSFMDLWPCTSSDLDNLARQEV

Q8GUP1 Cleavage stimulation factor subunit 773.9e-4868.66Show/hide
Query:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ
        KVAHN+FE+G+  +M+E  YIL+YADFL RLNDD+NIRALFERALSTLP+E+S EVWKRF++FEQTYGDL S+LKVE+  KEA S  G + +S  ESSLQ
Subjt:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ

Query:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFK
        DV SRYS+MDLWPCTS+DLD+LARQE++     K
Subjt:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFK

Q99LI7 Cleavage stimulation factor subunit 32.4e-2142.54Show/hide
Query:  CDGEK-VAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALS--TLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAAS
        C  +K VA  +FE G+ ++ +   Y+L Y D+L+ LN+D N R LFER L+  +LP E+S E+W RF+ FE   GDL S+LKVEK R  AF +      +
Subjt:  CDGEK-VAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALS--TLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAAS

Query:  TLESSLQDVASRYSFMDLWPCTSSDLDNLARQEV
         L      +  RY FMDL+PC++S+L  L  ++V
Subjt:  TLESSLQDVASRYSFMDLWPCTSSDLDNLARQEV

Arabidopsis top hitse value%identityAlignment
AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.8e-4968.66Show/hide
Query:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ
        KVAHN+FE+G+  +M+E  YIL+YADFL RLNDD+NIRALFERALSTLP+E+S EVWKRF++FEQTYGDL S+LKVE+  KEA S  G + +S  ESSLQ
Subjt:  KVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSMLKVEKERKEAFSQMGNDAASTLESSLQ

Query:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFK
        DV SRYS+MDLWPCTS+DLD+LARQE++     K
Subjt:  DVASRYSFMDLWPCTSSDLDNLARQEVITTQFFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAAGAAGTCGGCAGGGGTGGAGAACAATGGATGGGAAGTCACTGGTAAGTTGAGAACAATGGATAACGATGGATGTGAAATAGTCGTCGACGGTTGTGATGGGGA
GAAAGTTGCACACAATGTTTTTGAAGATGGAATGATACGGTTTATGAATGAGTCCTCGTATATTCTTGAATATGCAGATTTCCTTGCTCGCTTGAATGATGACAAAAATA
TTCGGGCTTTATTTGAGCGTGCTTTAAGTACTTTGCCTCTAGAGGAATCTACTGAGGTTTGGAAACGATTCGTCCGTTTTGAGCAAACTTATGGAGACCTAGGTAGCATG
CTGAAGGTTGAAAAAGAAAGAAAGGAGGCTTTTTCTCAAATGGGTAATGATGCCGCATCAACATTGGAAAGTTCATTGCAAGATGTTGCTTCCCGGTATAGTTTTATGGA
TCTCTGGCCATGCACATCCAGTGATCTAGATAATTTGGCTAGACAAGAGGTAATCACAACTCAATTCTTCAAAAGCAACACCAATTGCATTAATAGCATTTCTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTAAGAAGTCGGCAGGGGTGGAGAACAATGGATGGGAAGTCACTGGTAAGTTGAGAACAATGGATAACGATGGATGTGAAATAGTCGTCGACGGTTGTGATGGGGA
GAAAGTTGCACACAATGTTTTTGAAGATGGAATGATACGGTTTATGAATGAGTCCTCGTATATTCTTGAATATGCAGATTTCCTTGCTCGCTTGAATGATGACAAAAATA
TTCGGGCTTTATTTGAGCGTGCTTTAAGTACTTTGCCTCTAGAGGAATCTACTGAGGTTTGGAAACGATTCGTCCGTTTTGAGCAAACTTATGGAGACCTAGGTAGCATG
CTGAAGGTTGAAAAAGAAAGAAAGGAGGCTTTTTCTCAAATGGGTAATGATGCCGCATCAACATTGGAAAGTTCATTGCAAGATGTTGCTTCCCGGTATAGTTTTATGGA
TCTCTGGCCATGCACATCCAGTGATCTAGATAATTTGGCTAGACAAGAGGTAATCACAACTCAATTCTTCAAAAGCAACACCAATTGCATTAATAGCATTTCTTGCTAA
Protein sequenceShow/hide protein sequence
MTKKSAGVENNGWEVTGKLRTMDNDGCEIVVDGCDGEKVAHNVFEDGMIRFMNESSYILEYADFLARLNDDKNIRALFERALSTLPLEESTEVWKRFVRFEQTYGDLGSM
LKVEKERKEAFSQMGNDAASTLESSLQDVASRYSFMDLWPCTSSDLDNLARQEVITTQFFKSNTNCINSISC