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Sed0006987 (gene) of Chayote v1 genome

Gene IDSed0006987
OrganismSechium edule (Chayote v1)
Descriptionprotein RADIALIS-like 4
Genome locationLG10:29274679..29275898
RNA-Seq ExpressionSed0006987
SyntenySed0006987
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010597 - green leaf volatile biosynthetic process (biological process)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022951683.1 protein RADIALIS-like 4 [Cucurbita moschata]4.5e-3787.1Show/hide
Query:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ
        + SSSSSWT KQNK FEDALA Y EDTPDRWQKVAR VGGKTAEEV+RHYDILV DLMHIESGKVPLPKYKPIAS+S V GDEQRLMKNLKLQ
Subjt:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]3.1e-3887.1Show/hide
Query:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ
        + SSSSSWT KQNK FEDALALY EDTPDRWQKVAR VGGKTAEEV+RHYDILVQDLMHIESGK+PLP YKPI S+ TVYGDEQRLMKNLKLQ
Subjt:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ

XP_023002562.1 protein RADIALIS-like 4 [Cucurbita maxima]2.9e-3684.95Show/hide
Query:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ
        + SSSS+WT KQNK FEDALA Y EDTPDRWQKVAR VGGKTAEEV+RHYDILV DLMHIESGKVPLPKYKPI S+S V GDEQRLMKNLKLQ
Subjt:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ

XP_023538249.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo]1.0e-3686.02Show/hide
Query:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ
        + SSSS+WT KQNK FEDALA Y EDTPDRWQKVAR VGGKTAEEV+RHYDILV DLMHIESGKVPLPKYKPIAS+S V GDEQRLMKNLKLQ
Subjt:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ

XP_038884277.1 protein RADIALIS-like 4 [Benincasa hispida]2.2e-3683.87Show/hide
Query:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ
        + SSSSSWT KQNK FEDAL LY EDTPDRWQKVAR VGGKTAEEV+RHYDIL+QDLMHIESGKVPLP YKPI S+ +VY DEQRLMKNLKLQ
Subjt:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0LPB1 SANT domain-containing protein3.5e-3580.65Show/hide
Query:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ
        + +SSSSWT KQNK FEDAL LY EDTPDRWQKVAR VGGKT EEV+RHYDIL+QDLMHIESGKVPLP YKPIA + ++Y DEQRLMKNLKLQ
Subjt:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ

A0A6J1GIE7 protein RADIALIS-like 42.2e-3787.1Show/hide
Query:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ
        + SSSSSWT KQNK FEDALA Y EDTPDRWQKVAR VGGKTAEEV+RHYDILV DLMHIESGKVPLPKYKPIAS+S V GDEQRLMKNLKLQ
Subjt:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ

A0A6J1HFA3 protein RADIALIS-like 41.5e-3887.1Show/hide
Query:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ
        + SSSSSWT KQNK FEDALALY EDTPDRWQKVAR VGGKTAEEV+RHYDILVQDLMHIESGK+PLP YKPI S+ TVYGDEQRLMKNLKLQ
Subjt:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ

A0A6J1K2Q1 protein RADIALIS-like 41.5e-3887.1Show/hide
Query:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ
        + SSSSSWT KQNK FEDALALY EDTPDRWQKVAR VGGKTAEEV+RHYDILVQDLMHIESGK+PLP YKPI S+ TVYGDEQRLMKNLKLQ
Subjt:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ

A0A6J1KJV3 protein RADIALIS-like 41.4e-3684.95Show/hide
Query:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ
        + SSSS+WT KQNK FEDALA Y EDTPDRWQKVAR VGGKTAEEV+RHYDILV DLMHIESGKVPLPKYKPI S+S V GDEQRLMKNLKLQ
Subjt:  ASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 18.6e-2354.74Show/hide
Query:  MASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIAS-DSTVYGDEQRLMKNLKLQ
        M+S SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEV+RHY++LVQD+  IE+G VP P Y+      +     E++ M+N++LQ
Subjt:  MASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIAS-DSTVYGDEQRLMKNLKLQ

Q1A173 Protein RADIALIS-like 65.4e-2561.86Show/hide
Query:  MASSSSSS---WTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGD-EQRLMKNLKL
        MAS+S SS   WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEV+RHYDILV+DL++IE+G+VPLP YK   S+S    D + R MKNLK+
Subjt:  MASSSSSS---WTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGD-EQRLMKNLKL

Q6NNN0 Protein RADIALIS-like 35.2e-2065.22Show/hide
Query:  SSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYK
        SSS+SWT K+NK FE ALA Y +DTPDRW  VAR VGGK+AEEVRRHY++L++D+  IESG+ P P Y+
Subjt:  SSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYK

Q8GW75 Protein RADIALIS-like 54.9e-2663.83Show/hide
Query:  SSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQ---RLMKNLKLQ
        SSSSSWT+KQNK FE ALA+Y +DTPDRWQ VA+ VG K+AEEV+RHYDILV+DLM+IE   VPLPKYK +   S   G +    RLMKN+++Q
Subjt:  SSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQ---RLMKNLKLQ

Q9SIJ5 Protein RADIALIS-like 21.9e-2255.21Show/hide
Query:  MASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDST--VYGDEQRLMKNLKLQ
        M+S  S SWT KQNK FE ALA+Y +DTPDRW  VAR VGGKT EE +R YD+LV+D+  IE+G VP P YK    +S      DE++ M+++KLQ
Subjt:  MASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDST--VYGDEQRLMKNLKLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.5e-2763.83Show/hide
Query:  SSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQ---RLMKNLKLQ
        SSSSSWT+KQNK FE ALA+Y +DTPDRWQ VA+ VG K+AEEV+RHYDILV+DLM+IE   VPLPKYK +   S   G +    RLMKN+++Q
Subjt:  SSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQ---RLMKNLKLQ

AT1G75250.1 RAD-like 64.7e-2462.79Show/hide
Query:  MASSSSSS---WTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGD
        MAS+S SS   WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEV+RHYDILV+DL++IE+G+VPLP YK   S+S    D
Subjt:  MASSSSSS---WTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGD

AT1G75250.2 RAD-like 63.8e-2661.86Show/hide
Query:  MASSSSSS---WTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGD-EQRLMKNLKL
        MAS+S SS   WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEV+RHYDILV+DL++IE+G+VPLP YK   S+S    D + R MKNLK+
Subjt:  MASSSSSS---WTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGD-EQRLMKNLKL

AT2G21650.1 Homeodomain-like superfamily protein1.4e-2355.21Show/hide
Query:  MASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDST--VYGDEQRLMKNLKLQ
        M+S  S SWT KQNK FE ALA+Y +DTPDRW  VAR VGGKT EE +R YD+LV+D+  IE+G VP P YK    +S      DE++ M+++KLQ
Subjt:  MASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDST--VYGDEQRLMKNLKLQ

AT4G39250.1 RAD-like 16.1e-2454.74Show/hide
Query:  MASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIAS-DSTVYGDEQRLMKNLKLQ
        M+S SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEV+RHY++LVQD+  IE+G VP P Y+      +     E++ M+N++LQ
Subjt:  MASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIAS-DSTVYGDEQRLMKNLKLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCGAGTTCTAGCTCCTCGTGGACGACTAAGCAAAACAAAAATTTCGAGGACGCTCTCGCTTTATACCTCGAGGACACACCGGACAGGTGGCAAAAGGTGGCCAG
GAGAGTAGGAGGAAAAACAGCTGAGGAAGTAAGGAGACATTATGATATCCTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGGTTCCACTTCCCAAATACAAGCCTA
TTGCATCTGACTCTACGGTCTATGGTGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA
mRNA sequenceShow/hide mRNA sequence
TGACATAGTAACTTTCTTAATCTTCTCTACTTATTCTCTAGAACCAAATATATAAGAGCTTTTCCCATATAAACTCACATAACAATACAATGGCATCGAGTTCTAGCTCC
TCGTGGACGACTAAGCAAAACAAAAATTTCGAGGACGCTCTCGCTTTATACCTCGAGGACACACCGGACAGGTGGCAAAAGGTGGCCAGGAGAGTAGGAGGAAAAACAGC
TGAGGAAGTAAGGAGACATTATGATATCCTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGGTTCCACTTCCCAAATACAAGCCTATTGCATCTGACTCTACGGTCT
ATGGTGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAAGGG
Protein sequenceShow/hide protein sequence
MASSSSSSWTTKQNKNFEDALALYLEDTPDRWQKVARRVGGKTAEEVRRHYDILVQDLMHIESGKVPLPKYKPIASDSTVYGDEQRLMKNLKLQ