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Sed0007059 (gene) of Chayote v1 genome

Gene IDSed0007059
OrganismSechium edule (Chayote v1)
DescriptionPatatin
Genome locationLG08:36853131..36853478
RNA-Seq ExpressionSed0007059
SyntenySed0007059
Gene Ontology termsGO:0000162 - tryptophan biosynthetic process (biological process)
GO:0005737 - cytoplasm (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584077.1 hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sororia]9.7e-4280.17Show/hide
Query:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVC-SAFDVSESNQLNKIS
        MAATA VAIGTRGT+GSL+KKEIDYFAKIELERCSS   SSQR Q P MA+S CSSSPPTFWHSV SWRRKKKR+ +RF+PK+C SAFDVSESNQ+NKIS
Subjt:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVC-SAFDVSESNQLNKIS

Query:  GFSYTILQNDSHSFHM
        GF+YTILQN+ HS HM
Subjt:  GFSYTILQNDSHSFHM

KAG7019678.1 hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-4179.31Show/hide
Query:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVC-SAFDVSESNQLNKIS
        MAATA VAIGTRGT+GSL+KKEIDYFAKIELERCSS   SSQR Q P MA+S CSS PPTFWHSV SWRRKKKR+ +RF+PK+C SAFDVSESNQ+NKIS
Subjt:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVC-SAFDVSESNQLNKIS

Query:  GFSYTILQNDSHSFHM
        GF+YTILQN+ HS HM
Subjt:  GFSYTILQNDSHSFHM

KGN64543.2 hypothetical protein Csa_013063 [Cucumis sativus]1.9e-3775.65Show/hide
Query:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG
        MAA APVAIGTRGT+GSLVKKEIDYFAKIELE     S SSQR+QGP MASS C SSPPTFW S+ SWRRK K TSNRF+ K+CS FD S SN++NKISG
Subjt:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG

Query:  FSYTILQNDSHSFHM
         SYTILQND HS HM
Subjt:  FSYTILQNDSHSFHM

XP_011648422.1 uncharacterized protein LOC105434455 [Cucumis sativus]1.9e-3775.65Show/hide
Query:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG
        MAA APVAIGTRGT+GSLVKKEIDYFAKIELE     S SSQR+QGP MASS C SSPPTFW S+ SWRRK K TSNRF+ K+CS FD S SN++NKISG
Subjt:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG

Query:  FSYTILQNDSHSFHM
         SYTILQND HS HM
Subjt:  FSYTILQNDSHSFHM

XP_016898893.1 PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo]1.3e-3875.65Show/hide
Query:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG
        MAATAPVAIGTRGT+GSL+KKEIDYFAKIELE     S SSQR+QGP MASS C SSPPTFW S+ SWRRKKK TSNRF+ K+CS FD S SN++NKISG
Subjt:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG

Query:  FSYTILQNDSHSFHM
         SYTILQND HS H+
Subjt:  FSYTILQNDSHSFHM

TrEMBL top hitse value%identityAlignment
A0A0A0LX43 Uncharacterized protein9.2e-3875.65Show/hide
Query:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG
        MAA APVAIGTRGT+GSLVKKEIDYFAKIELE     S SSQR+QGP MASS C SSPPTFW S+ SWRRK K TSNRF+ K+CS FD S SN++NKISG
Subjt:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG

Query:  FSYTILQNDSHSFHM
         SYTILQND HS HM
Subjt:  FSYTILQNDSHSFHM

A0A1S4DSE9 uncharacterized protein LOC1034854096.4e-3975.65Show/hide
Query:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG
        MAATAPVAIGTRGT+GSL+KKEIDYFAKIELE     S SSQR+QGP MASS C SSPPTFW S+ SWRRKKK TSNRF+ K+CS FD S SN++NKISG
Subjt:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG

Query:  FSYTILQNDSHSFHM
         SYTILQND HS H+
Subjt:  FSYTILQNDSHSFHM

A0A314Z3X1 Uncharacterized protein4.4e-2457.39Show/hide
Query:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGP--GMASSSCS-SSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNK
        MAA AP+AIGTRGTVGSLV+KEI+YF+K+EL+R    SSSS++ QG    M SSSC+ SS P+FW  + +W+RKK+R+S RFL  +CSA  V+E+N+LN 
Subjt:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGP--GMASSSCS-SSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNK

Query:  ISGFSYTILQNDSHS
        I GF+Y IL++D ++
Subjt:  ISGFSYTILQNDSHS

A0A5A7UTL1 Uncharacterized protein2.6e-3276Show/hide
Query:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG
        MAATAPVAIGTRGT+GSL+KKEIDYFAKIELE     S SSQR+QGP MASS C SSPPTFW S+ SWRRKKK TSNRF+ K+CS FD S SN++NKISG
Subjt:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG

A0A6J1CHB1 uncharacterized protein LOC1110108621.7e-3674.78Show/hide
Query:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG
        MAATAPVAIGTRGTVGSLVKKEIDYFAKIE ERCS N  +S         SS  SSSPPTFWH+V SWRRKKKR  NRF+ K+CSAFDVS SN+LNKISG
Subjt:  MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISG

Query:  FSYTILQNDSHSFHM
        F+YTILQND +S HM
Subjt:  FSYTILQNDSHSFHM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G21780.1 unknown protein9.2e-1442.48Show/hide
Query:  APVAIGTRGTVGSLVKKEIDYFAKI-----ELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRT---SNRFLPKVCSAFDVSESNQLN
        AP+AIGTRGT+GSLV+KEIDYF        + +    NS  ++ T      SSS   S    W S T WR+KK++T     +F P +CSA +VS     N
Subjt:  APVAIGTRGTVGSLVKKEIDYFAKI-----ELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRT---SNRFLPKVCSAFDVSESNQLN

Query:  KISGFSYTILQND
        ++ GF+Y IL++D
Subjt:  KISGFSYTILQND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCAACTGCTCCTGTTGCCATCGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAAGGAAATTGATTACTTCGCCAAGATTGAGCTTGAAAGATGTAGCAGCAA
CAGCAGCAGCTCACAGAGAACTCAAGGGCCTGGTATGGCTTCTTCTAGCTGCAGCAGTTCCCCTCCCACTTTCTGGCACTCTGTAACGTCGTGGCGAAGGAAGAAGAAGC
GAACCAGCAATCGTTTTCTCCCTAAGGTTTGCTCGGCTTTCGACGTTTCGGAAAGCAATCAGCTGAATAAGATATCTGGGTTCAGTTATACCATCCTTCAGAATGATTCC
CACAGCTTCCACATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCAACTGCTCCTGTTGCCATCGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAAGGAAATTGATTACTTCGCCAAGATTGAGCTTGAAAGATGTAGCAGCAA
CAGCAGCAGCTCACAGAGAACTCAAGGGCCTGGTATGGCTTCTTCTAGCTGCAGCAGTTCCCCTCCCACTTTCTGGCACTCTGTAACGTCGTGGCGAAGGAAGAAGAAGC
GAACCAGCAATCGTTTTCTCCCTAAGGTTTGCTCGGCTTTCGACGTTTCGGAAAGCAATCAGCTGAATAAGATATCTGGGTTCAGTTATACCATCCTTCAGAATGATTCC
CACAGCTTCCACATGTAG
Protein sequenceShow/hide protein sequence
MAATAPVAIGTRGTVGSLVKKEIDYFAKIELERCSSNSSSSQRTQGPGMASSSCSSSPPTFWHSVTSWRRKKKRTSNRFLPKVCSAFDVSESNQLNKISGFSYTILQNDS
HSFHM