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Sed0007091 (gene) of Chayote v1 genome

Gene IDSed0007091
OrganismSechium edule (Chayote v1)
DescriptionRetrotransposon protein
Genome locationLG06:10881444..10883008
RNA-Seq ExpressionSed0007091
SyntenySed0007091
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_024022021.1 uncharacterized protein LOC112091787 [Morus notabilis]5.4e-2453.33Show/hide
Query:  APNGTFRPSYLGALLLDIQTKMPNTTLNT-TSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSL
        A NGTF+P YL  L   +  K+P   L     I+ +V+ LKKQY AI EM+ P GSGFGWN+  +CV ++KD FD WVKSHP+A+GL +KPFP++  L L
Subjt:  APNGTFRPSYLGALLLDIQTKMPNTTLNT-TSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSL

Query:  IFGND
        +FGND
Subjt:  IFGND

XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]1.8e-2756.86Show/hide
Query:  NGTFRPSYLGALLLDIQTKMPNTTLNTTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFG
        NGTFRP YL  L   +  K+P   LN  +IECKVR+LKKQY A+ EM++   SGF WNE  +CV ++++ FDLWV+SHPNA+G+W KPFPHY  LS +FG
Subjt:  NGTFRPSYLGALLLDIQTKMPNTTLNTTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFG

Query:  ND
         D
Subjt:  ND

XP_038892629.1 uncharacterized protein At2g29880-like [Benincasa hispida]5.8e-2656.86Show/hide
Query:  NGTFRPSYLGALLLDIQTKMPNTTLNTTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFG
        NGTFRP YL  L   +  K+P   LN  +IECKVR+LKKQY A+ EM++   SG GWNE  +CV ++++ FDLWV SHPNA+ +W+KPFPHY  LS IFG
Subjt:  NGTFRPSYLGALLLDIQTKMPNTTLNTTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFG

Query:  ND
         D
Subjt:  ND

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]1.9e-2449.18Show/hide
Query:  NGTFRPSYLGALLLDIQTKMPNTTLNTTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFG
        NGTFR  YL  L   +  K+P   LN  +IECKVR+LKKQY A+ EM++   SGFGWNE  +CV ++K+ FDLWV+SH NA+G+W+K F HY  LS +FG
Subjt:  NGTFRPSYLGALLLDIQTKMPNTTLNTTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFG

Query:  NDMLKVITSPLKFSPKIIKAQS
         D     T      P++ +A+S
Subjt:  NDMLKVITSPLKFSPKIIKAQS

XP_038902479.1 uncharacterized protein At2g29880-like [Benincasa hispida]1.3e-2554.9Show/hide
Query:  NGTFRPSYLGALLLDIQTKMPNTTLNTTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFG
        NGTFRP YL  L   +  K+P  TLN  +IECKVR+LKKQY  + EM++   SGF WNE  +CV ++++ FDLWV SHPNA+ +W+KPFPHY   S +FG
Subjt:  NGTFRPSYLGALLLDIQTKMPNTTLNTTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFG

Query:  ND
         D
Subjt:  ND

TrEMBL top hitse value%identityAlignment
A0A5A7TGP1 Retrotransposon protein3.8e-2345.38Show/hide
Query:  ETVSTGSQEAQHLTAPNGTFRPSYLGALLLDIQTKMPNTTLN-TTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEG
        E VS G  ++      NGTFRP YL  L+  +  K+P   +  TT I+C+++TLK+ + AI EM  P  SGFGWN+  +C+ ++K+ FD WV+SHP A+G
Subjt:  ETVSTGSQEAQHLTAPNGTFRPSYLGALLLDIQTKMPNTTLN-TTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEG

Query:  LWSKPFPHYHALSLIFGND
        L +KPFP+Y  L+ +FG D
Subjt:  LWSKPFPHYHALSLIFGND

A0A5A7TRV1 Retrotransposon protein1.1e-2245.38Show/hide
Query:  ETVSTGSQEAQHLTAPNGTFRPSYLGALLLDIQTKMPNTTLN-TTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEG
        E VS G  ++      NGTFRP YL  L+  +  K+P   +  TT I+C+++TLK+ + AI EM  P  SGFGWN+  +C+  +K+ FD WV+SHP A+G
Subjt:  ETVSTGSQEAQHLTAPNGTFRPSYLGALLLDIQTKMPNTTLN-TTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEG

Query:  LWSKPFPHYHALSLIFGND
        L +KPFP+Y  L+ +FG D
Subjt:  LWSKPFPHYHALSLIFGND

A0A5D3BCN9 Retrotransposon protein1.1e-2245.38Show/hide
Query:  ETVSTGSQEAQHLTAPNGTFRPSYLGALLLDIQTKMPNTTLN-TTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEG
        E VS G  ++      NGTFRP YL  L+  +  K+P   +  TT I+C+++TLK+ + AI EM  P  SGFGWN+  +C+  +K+ FD WV+SHP A+G
Subjt:  ETVSTGSQEAQHLTAPNGTFRPSYLGALLLDIQTKMPNTTLN-TTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEG

Query:  LWSKPFPHYHALSLIFGND
        L +KPFP+Y  L+ +FG D
Subjt:  LWSKPFPHYHALSLIFGND

A0A5D3CWL2 Retrotransposon protein1.1e-2245.38Show/hide
Query:  ETVSTGSQEAQHLTAPNGTFRPSYLGALLLDIQTKMPNTTLN-TTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEG
        E VS G  ++      NGTFRP YL  L+  +  K+P   +  TT I+C+++TLK+ + AI EM  P  SGFGWN+  +C+  +K+ FD WV+SHP A+G
Subjt:  ETVSTGSQEAQHLTAPNGTFRPSYLGALLLDIQTKMPNTTLN-TTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEG

Query:  LWSKPFPHYHALSLIFGND
        L +KPFP+Y  L+ +FG D
Subjt:  LWSKPFPHYHALSLIFGND

A0A5D3DCZ1 Retrotransposon protein1.1e-2245.38Show/hide
Query:  ETVSTGSQEAQHLTAPNGTFRPSYLGALLLDIQTKMPNTTLN-TTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEG
        E VS G  ++      NGTFRP YL  L+  +  K+P   +  TT I+C+++TLK+ + AI EM  P  SGFGWN+  +C+  +K+ FD WV+SHP A+G
Subjt:  ETVSTGSQEAQHLTAPNGTFRPSYLGALLLDIQTKMPNTTLN-TTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEG

Query:  LWSKPFPHYHALSLIFGND
        L +KPFP+Y  L+ +FG D
Subjt:  LWSKPFPHYHALSLIFGND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein1.0e-0432.39Show/hide
Query:  IECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFG
        ++ +   L KQY  +K ++  G  GF W++  Q V  D   + L++K+HP A    +KP  ++  L LI+G
Subjt:  IECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFG

AT2G24960.2 unknown protein1.0e-0432.39Show/hide
Query:  IECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFG
        ++ +   L KQY  +K ++  G  GF W++  Q V  D   + L++K+HP A    +KP  ++  L LI+G
Subjt:  IECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFG

AT4G02210.1 unknown protein7.8e-0527.54Show/hide
Query:  RTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFGNDM
        +TL+  + ++  ++     GF W++ RQ V  D   +D ++K HP++     K  P Y  L L++ + M
Subjt:  RTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFGNDM

AT4G02210.2 unknown protein7.8e-0527.54Show/hide
Query:  RTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFGNDM
        +TL+  + ++  ++     GF W++ RQ V  D   +D ++K HP++     K  P Y  L L++ + M
Subjt:  RTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFGNDM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATTAGGTCGTTTGATGAGTTTTATGATCCAGAAACAGTCTCGACGGGTTCGCAAGAAGCTCAACATCTAACCGCACCAAATGGGACCTTCCGTCCCAGTTACTT
AGGAGCCCTCTTATTGGATATTCAAACGAAGATGCCAAATACTACACTAAATACTACGAGTATTGAATGCAAGGTTCGTACCCTAAAAAAACAGTATGCTGCCATCAAGG
AAATGGTGGCCCCGGGTGGAAGTGGTTTCGGTTGGAATGAGGCTAGACAGTGTGTTGATATTGATAAAGACACATTCGATCTTTGGGTCAAGTCGCACCCGAATGCCGAA
GGCCTATGGAGCAAGCCGTTTCCTCATTACCATGCACTGTCCTTAATATTCGGGAATGATATGTTAAAAGTCATCACTAGCCCATTGAAGTTTAGCCCAAAAATTATAAA
AGCCCAATCATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAATTAGGTCGTTTGATGAGTTTTATGATCCAGAAACAGTCTCGACGGGTTCGCAAGAAGCTCAACATCTAACCGCACCAAATGGGACCTTCCGTCCCAGTTACTT
AGGAGCCCTCTTATTGGATATTCAAACGAAGATGCCAAATACTACACTAAATACTACGAGTATTGAATGCAAGGTTCGTACCCTAAAAAAACAGTATGCTGCCATCAAGG
AAATGGTGGCCCCGGGTGGAAGTGGTTTCGGTTGGAATGAGGCTAGACAGTGTGTTGATATTGATAAAGACACATTCGATCTTTGGGTCAAGTCGCACCCGAATGCCGAA
GGCCTATGGAGCAAGCCGTTTCCTCATTACCATGCACTGTCCTTAATATTCGGGAATGATATGTTAAAAGTCATCACTAGCCCATTGAAGTTTAGCCCAAAAATTATAAA
AGCCCAATCATCATGA
Protein sequenceShow/hide protein sequence
MGIRSFDEFYDPETVSTGSQEAQHLTAPNGTFRPSYLGALLLDIQTKMPNTTLNTTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAE
GLWSKPFPHYHALSLIFGNDMLKVITSPLKFSPKIIKAQSS