CuGenDBv2

Gene ID	Sed0007098
Organism	Sechium edule (Chayote v1)
Description	Regulatory protein RecX family protein, putative
Genome location	LG07:42690258..42694484
RNA-Seq Expression	Sed0007098
Synteny	Sed0007098
Gene Ontology terms	GO:0006282 - regulation of DNA repair (biological process) GO:0016020 - membrane (cellular component)
InterPro domains	IPR003783 - Regulatory protein RecX IPR036388 - Winged helix-like DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7024991.1 recX, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.4e-73

66.95

Show/hide

Query:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNG-------GFEVQHRDAV--WNFYDELRYQ
        MAGFSVR +IQLQ R LS SWVK S VVTCL  RVYSSSGPVRYTPK SL+DKKS T   PEI NGNDF+          EV+HR AV   NFYD+ R Q
Subjt:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNG-------GFEVQHRDAV--WNFYDELRYQ

Query:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV
        N  EK N+SA GSM GL++   D+L +VDD L+E +A+ E+ N   KK Y G  D  GNKS+Q+AEKLA+ELLA RAFTAVELRKKLLGK+ SP   EAV
Subjt:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV

Query:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV
        INDFKSRGLINDGLYAE FSHSRW+SSSWGPRKIKQ++V
Subjt:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV

XP_022139668.1 uncharacterized protein LOC111010517 isoform X1 [Momordica charantia]

4.7e-75

66.95

Show/hide

Query:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNGG-------FEVQHRDAV--WNFYDELRYQ
        MAG SVR +IQLQHRV   SWVKKSS+V CL+TR Y+SSGPVRYTPK S +D+K  T   PEIVNG+DF  G        EV+HR AV   NFYD L +Q
Subjt:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNGG-------FEVQHRDAV--WNFYDELRYQ

Query:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV
         Q EK N S   SMQG E+  +D+L FVDDLLQ+ +A+DE     +KKCYHGNND  GNKSKQ+AEKLA+ELLA RAFTAVELRKKLLG++ S D  EAV
Subjt:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV

Query:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV
        INDFKSRGLINDGLYAEAFS SRW+SSSWGPRK+KQ++V
Subjt:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV

XP_022976032.1 uncharacterized protein LOC111476555 isoform X1 [Cucurbita maxima]

4.0e-74

67.78

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Query:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNG-------GFEVQHRDAV--WNFYDELRYQ
        MAGFSVR +IQLQ R LS SWVKKS VVTCL  RVYSSSGPVRYTPK SL+DKKS T   PEIVNGNDF+          EV+HR AV   NFYD+ R Q
Subjt:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNG-------GFEVQHRDAV--WNFYDELRYQ

Query:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV
        N  EK N+SA GSM GLE+   D+L +VDD LQE  A+ E+ N   KKCY G  D  GNKS+Q+AEKLA+ELLA RAFTAV LRKKLLGK+ SP   EAV
Subjt:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV

Query:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV
        INDFKSRGLINDG YAE FSHSRW+SSSWGPRKIKQ+++
Subjt:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV

XP_022976033.1 uncharacterized protein LOC111476555 isoform X2 [Cucurbita maxima]

2.6e-73

68.64

Show/hide

Query:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNG-------GFEVQHRDAV--WNFYDELRYQ
        MAGFSVR +IQLQ R LS SWVKKS VVTCL  RVYSSSGPVRYTPK SL+DKKS T   PEIVNGNDF+          EV+HR AV   NFYD+ R Q
Subjt:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNG-------GFEVQHRDAV--WNFYDELRYQ

Query:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV
        N  EK N+SA GSM GLE+   D+L +VDD LQE  A+ E+ N   KKCY G  D  GNKS+Q+AEKLA+ELLA RAFTAV LRKKLLGK+ SP   EAV
Subjt:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV

Query:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQ
        INDFKSRGLINDG YAE FSHSRW+SSSWGPRKIKQ
Subjt:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQ

XP_038897535.1 uncharacterized protein LOC120085566 isoform X1 [Benincasa hispida]

9.5e-76

65.5

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Query:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNGG-------FEVQHRDAV--WNFYDELRYQ
        MAGFSVR +IQLQHRVLS SWVKKS V TCL+ RVYSSSGPVRY PK SL+DKKS T   PEIVN NDF+ G        EV+HRDAV   N  D+L  +
Subjt:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNGG-------FEVQHRDAV--WNFYDELRYQ

Query:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLG-------------------NKSKQEAEKLAVELLALRAFTAV
        NQ EK N+SA GSM  LE+  +D+L  VDDLLQE +A+DEE N  DKKCY GNND  G                   NKSKQ+AEKLA+ELLA RAFTAV
Subjt:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLG-------------------NKSKQEAEKLAVELLALRAFTAV

Query:  ELRKKLLGKKVSPDITEAVINDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV
        ELRKKLLGK++SPD  E VINDFKSRGLINDGLYAEAFS SRW+S SWGPRKIKQ++V
Subjt:  ELRKKLLGKKVSPDITEAVINDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CDP1 uncharacterized protein LOC111010517 isoform X2

1.4e-72

66.11

Show/hide

Query:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNGG-------FEVQHRDAV--WNFYDELRYQ
        MAG SVR +IQLQHRV   SWVKKSS+V CL+TR Y+SSGPVRYTPK S +D+K  T   PEIVNG+DF  G        EV+HR AV   NFYD L +Q
Subjt:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNGG-------FEVQHRDAV--WNFYDELRYQ

Query:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV
         Q EK N S   SMQ   +  +D+L FVDDLLQ+ +A+DE     +KKCYHGNND  GNKSKQ+AEKLA+ELLA RAFTAVELRKKLLG++ S D  EAV
Subjt:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV

Query:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV
        INDFKSRGLINDGLYAEAFS SRW+SSSWGPRK+KQ++V
Subjt:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV

A0A6J1CG76 uncharacterized protein LOC111010517 isoform X1

2.3e-75

66.95

Show/hide

Query:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNGG-------FEVQHRDAV--WNFYDELRYQ
        MAG SVR +IQLQHRV   SWVKKSS+V CL+TR Y+SSGPVRYTPK S +D+K  T   PEIVNG+DF  G        EV+HR AV   NFYD L +Q
Subjt:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNGG-------FEVQHRDAV--WNFYDELRYQ

Query:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV
         Q EK N S   SMQG E+  +D+L FVDDLLQ+ +A+DE     +KKCYHGNND  GNKSKQ+AEKLA+ELLA RAFTAVELRKKLLG++ S D  EAV
Subjt:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV

Query:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV
        INDFKSRGLINDGLYAEAFS SRW+SSSWGPRK+KQ++V
Subjt:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV

A0A6J1F8T6 uncharacterized protein LOC111443139

8.2e-73

66.95

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Query:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNG-------GFEVQHRDAV--WNFYDELRYQ
        MAGFSVR +IQLQ R LS SWVK S VVTCL  RVYSSSGPVRYTPK SL+DKK  T   PEI NGNDF+          EV+HR AV   NFYD+ R Q
Subjt:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNG-------GFEVQHRDAV--WNFYDELRYQ

Query:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV
        N  EK N+SA GSM GL++   D+L +VDD LQE +A+ E+ N   KK Y G  D  GNKS+Q+AEKLA+ELLA RAFTAVELRKKLLGK+ SP   EAV
Subjt:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV

Query:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV
        INDFKSRGLINDGLYAE FSHSRW+SSSWGPRKIKQ++V
Subjt:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV

A0A6J1IEN5 uncharacterized protein LOC111476555 isoform X1

1.9e-74

67.78

Show/hide

Query:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNG-------GFEVQHRDAV--WNFYDELRYQ
        MAGFSVR +IQLQ R LS SWVKKS VVTCL  RVYSSSGPVRYTPK SL+DKKS T   PEIVNGNDF+          EV+HR AV   NFYD+ R Q
Subjt:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNG-------GFEVQHRDAV--WNFYDELRYQ

Query:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV
        N  EK N+SA GSM GLE+   D+L +VDD LQE  A+ E+ N   KKCY G  D  GNKS+Q+AEKLA+ELLA RAFTAV LRKKLLGK+ SP   EAV
Subjt:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV

Query:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV
        INDFKSRGLINDG YAE FSHSRW+SSSWGPRKIKQ+++
Subjt:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIV

A0A6J1IKX4 uncharacterized protein LOC111476555 isoform X2

1.3e-73

68.64

Show/hide

Query:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNG-------GFEVQHRDAV--WNFYDELRYQ
        MAGFSVR +IQLQ R LS SWVKKS VVTCL  RVYSSSGPVRYTPK SL+DKKS T   PEIVNGNDF+          EV+HR AV   NFYD+ R Q
Subjt:  MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTT---PEIVNGNDFNG-------GFEVQHRDAV--WNFYDELRYQ

Query:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV
        N  EK N+SA GSM GLE+   D+L +VDD LQE  A+ E+ N   KKCY G  D  GNKS+Q+AEKLA+ELLA RAFTAV LRKKLLGK+ SP   EAV
Subjt:  NQKEKGNFSADGSMQGLENGSEDSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAV

Query:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQ
        INDFKSRGLINDG YAE FSHSRW+SSSWGPRKIKQ
Subjt:  INDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G13226.1 regulatory protein RecX family protein

3.2e-21

30.38

Show/hide

Query:  GFSVRTAIQLQHRVLSKSWVKKSSV--VTCLRTRVYSSSGPVRYTPKGS---LSDKKSTTPEIVNGNDFNGGFEVQHRDAVWNFYDELRYQNQKEKG---
        GF +   IQ  HR+    W K+ SV  + C   R Y SSG  +Y PK S     D  S   ++   +    GF+V+           L  Q + + G   
Subjt:  GFSVRTAIQLQHRVLSKSWVKKSSV--VTCLRTRVYSSSGPVRYTPKGS---LSDKKSTTPEIVNGNDFNGGFEVQHRDAVWNFYDELRYQNQKEKG---

Query:  NFSADGSMQG---LENGSEDSLI------------------FVDDLLQER------------DAIDEESNS----------NDKKCY----------HGN
        N S D S +G   L+ G + S +                    D  L+++            D+ DE SN             K+ Y             
Subjt:  NFSADGSMQG---LENGSEDSLI------------------FVDDLLQER------------DAIDEESNS----------NDKKCY----------HGN

Query:  NDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAVINDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIVFAFIDEK
        +     K+ Q+AE +A+  L LRA++A +L+KKL+GKK   ++ + VI+DF+ RG +ND LYAE+F+ SRW+S SWGPR+IKQ++    I  K
Subjt:  NDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAVINDFKSRGLINDGLYAEAFSHSRWASSSWGPRKIKQSIVFAFIDEK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGGGATTCAGCGTCCGAACCGCCATTCAGCTTCAACATAGAGTTCTTTCAAAATCCTGGGTGAAGAAGAGCAGCGTTGTTACTTGCCTGAGAACCAGAGTCTATAG
CTCTTCAGGACCTGTTAGGTATACTCCAAAAGGGTCTTTAAGTGATAAGAAATCAACAACGCCGGAGATTGTCAATGGAAACGATTTCAATGGTGGGTTTGAAGTTCAAC
ACAGGGATGCAGTATGGAATTTTTATGATGAATTGCGTTATCAAAATCAGAAGGAGAAGGGAAACTTCTCAGCAGATGGAAGTATGCAAGGGCTTGAAAATGGATCCGAA
GACAGTTTGATCTTTGTTGATGATCTCTTGCAAGAGCGTGATGCAATAGATGAGGAGTCAAATAGTAACGACAAGAAATGTTATCATGGAAACAATGATTCACTGGGAAA
TAAAAGCAAGCAAGAAGCTGAGAAATTAGCAGTTGAATTACTTGCGTTAAGAGCCTTCACTGCAGTTGAACTGAGGAAGAAATTGCTTGGCAAGAAGGTCTCTCCTGACA
TAACAGAAGCAGTAATCAATGATTTCAAGAGCAGGGGGTTGATCAACGATGGCCTATATGCCGAAGCGTTTTCTCATTCAAGATGGGCCTCCTCCAGTTGGGGACCAAGG
AAGATCAAGCAGTCGATCGTTTTCGCTTTCATCGACGAGAAATATAAGTGGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAGFSVRTAIQLQHRVLSKSWVKKSSVVTCLRTRVYSSSGPVRYTPKGSLSDKKSTTPEIVNGNDFNGGFEVQHRDAVWNFYDELRYQNQKEKGNFSADGSMQGLENGSE
DSLIFVDDLLQERDAIDEESNSNDKKCYHGNNDSLGNKSKQEAEKLAVELLALRAFTAVELRKKLLGKKVSPDITEAVINDFKSRGLINDGLYAEAFSHSRWASSSWGPR
KIKQSIVFAFIDEKYKW

Sed0007098 (gene) of Chayote v1 genome