CuGenDBv2

Gene ID	Sed0007178
Organism	Sechium edule (Chayote v1)
Description	Retrotransposon protein
Genome location	LG09:25100346..25100967
RNA-Seq Expression	Sed0007178
Synteny	Sed0007178
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040114.1 retrotransposon protein [Cucumis melo var. makuwa]

3.2e-31

39.34

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Query:  KLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIAE
        KLPGC + +TTVID R+K+LKR +QAIAEM G  CSGF WND+ KCI  E  +F NWV++HP AKGL NKPFP+YD+L Y+FG+DRA    +++  D+  
Subjt:  KLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIAE

Query:  EDLN---TEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD
         +            G++++   Y   + +++++   +  SR +   +   G KRKR S++   L+ +   ++   EQ+ +I +
Subjt:  EDLN---TEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD

KAA0042500.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-31

40.44

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Query:  KLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIAE
        KLPGC + +TTVID R+K+LKR +QAIAEM G  CSGF WND+ KCI VE  +F NWV++HP AKGL NKPFP+YD+L Y+FG+DRA    +++  D+  
Subjt:  KLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIAE

Query:  EDLN---TEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD
         +            G++++   Y   I +++++   +  SR +   +   G KRKR S++   L+ +   ++   EQ+ +I +
Subjt:  EDLN---TEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD

KAA0050293.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-31

39.78

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Query:  MHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARD
        M  KLPGC + +TTVID R+K+LKR +QAIAEM G  CSGF WND+ KCI  E  +F NWV++HP AKGL NKPFP+YD+L Y+FG+DRA    +++  D
Subjt:  MHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARD

Query:  IAEE---DLNTEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD
        +      D         G++++   Y   + +++++   +  SR +   +   G KRKR S++   L+ +   ++   EQ+ +I +
Subjt:  IAEE---DLNTEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD

KAA0057610.1 retrotransposon protein [Cucumis melo var. makuwa]

3.2e-31

40.98

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Query:  KLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIA-
        KLPGC + +TTVID R+K+LKR +QAIAEM G  CSGF WND+ KCI  E  +F NWV++HP AKGL NKPFP+YD+L Y+FG+DRA    +++  D+  
Subjt:  KLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIA-

Query:  -EEDLNTEVGEAGGSQEYYIP----EIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD
         E     +  + G   E ++P     I +++++   +  SR +   +   G KRKR S++   L+ +   ++   EQ+ +I +
Subjt:  -EEDLNTEVGEAGGSQEYYIP----EIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD

KAA0058882.1 retrotransposon protein [Cucumis melo var. makuwa]

3.2e-31

39.25

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Query:  MHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARD
        M  KLPGC + +TTVID R+K+LKR +QAIAEM G  CSGF WND+ KCI  E  +F NWV++HP AKGL NKPFP+YD+L Y+FG+DRA    +++  D
Subjt:  MHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARD

Query:  IAEEDLN---TEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD
        +   +            G++++   Y   + +++++   +  SR +   +   G KRKR S++   L+ +   ++   EQ+ +I +
Subjt:  IAEEDLN---TEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9H0 Retrotransposon protein

1.5e-31

39.34

Show/hide

Query:  KLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIAE
        KLPGC + +TTVID R+K+LKR +QAIAEM G  CSGF WND+ KCI  E  +F NWV++HP AKGL NKPFP+YD+L Y+FG+DRA    +++  D+  
Subjt:  KLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIAE

Query:  EDLN---TEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD
         +            G++++   Y   + +++++   +  SR +   +   G KRKR S++   L+ +   ++   EQ+ +I +
Subjt:  EDLN---TEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD

A0A5A7TGP1 Retrotransposon protein

9.1e-32

40.44

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Query:  KLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIAE
        KLPGC + +TTVID R+K+LKR +QAIAEM G  CSGF WND+ KCI VE  +F NWV++HP AKGL NKPFP+YD+L Y+FG+DRA    +++  D+  
Subjt:  KLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIAE

Query:  EDLN---TEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD
         +            G++++   Y   I +++++   +  SR +   +   G KRKR S++   L+ +   ++   EQ+ +I +
Subjt:  EDLN---TEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD

A0A5A7U308 Retrotransposon protein

9.1e-32

39.78

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Query:  MHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARD
        M  KLPGC + +TTVID R+K+LKR +QAIAEM G  CSGF WND+ KCI  E  +F NWV++HP AKGL NKPFP+YD+L Y+FG+DRA    +++  D
Subjt:  MHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARD

Query:  IAEE---DLNTEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD
        +      D         G++++   Y   + +++++   +  SR +   +   G KRKR S++   L+ +   ++   EQ+ +I +
Subjt:  IAEE---DLNTEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD

A0A5A7UR77 Retrotransposon protein

1.5e-31

40.98

Show/hide

Query:  KLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIA-
        KLPGC + +TTVID R+K+LKR +QAIAEM G  CSGF WND+ KCI  E  +F NWV++HP AKGL NKPFP+YD+L Y+FG+DRA    +++  D+  
Subjt:  KLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIA-

Query:  -EEDLNTEVGEAGGSQEYYIP----EIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD
         E     +  + G   E ++P     I +++++   +  SR +   +   G KRKR S++   L+ +   ++   EQ+ +I +
Subjt:  -EEDLNTEVGEAGGSQEYYIP----EIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD

A0A5A7USM3 Retrotransposon protein

1.5e-31

39.25

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Query:  MHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARD
        M  KLPGC + +TTVID R+K+LKR +QAIAEM G  CSGF WND+ KCI  E  +F NWV++HP AKGL NKPFP+YD+L Y+FG+DRA    +++  D
Subjt:  MHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARD

Query:  IAEEDLN---TEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD
        +   +            G++++   Y   + +++++   +  SR +   +   G KRKR S++   L+ +   ++   EQ+ +I +
Subjt:  IAEEDLN---TEVGEAGGSQEY---YIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.1 unknown protein

8.4e-06

27.47

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Query:  VIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIAEED
        V+ +R  +L +QY  +  +L +   GF W+  ++ +  + +++  +++AHP A+    KP  ++ DL  I+G   A    S S+ D+  ED
Subjt:  VIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIAEED

AT2G24960.2 unknown protein

4.5e-07

24.81

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Query:  VIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIAEEDLNT-EVGEA
        V+  R K L+R Y  I  +L    +GFSW+ +   +  +  ++  ++QAHP A+    K  P Y +L +IFGK+ +    ++ A+        T  + E+
Subjt:  VIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIAEEDLNT-EVGEA

Query:  GGSQEY----YIPEIPVAEEEDPNTPTSRVARP
        G +  +       ++     E  + P S +  P
Subjt:  GGSQEY----YIPEIPVAEEEDPNTPTSRVARP

Sequences

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CDS sequence

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ATGCACCTAAAGCTACCTGGATGCCCAATTACATCTACCACTGTGATTGATACTAGAGTGAAGAGTCTGAAACGACAGTACCAAGCTATTGCCGAGATGCTGGGAAATAC
TTGTAGTGGATTCAGTTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTTTACAACTGGGTTCAGGCGCACCCAAATGCAAAGGGTCTCAACAACAAGC
CTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGAGTCAATATCTCAGTCTGCTAGAGATATTGCAGAAGAAGATTTGAATACAGAGGTC
GGTGAGGCAGGCGGTTCCCAAGAATATTACATACCTGAGATTCCTGTTGCTGAAGAAGAAGACCCAAATACCCCCACAAGTAGAGTAGCTAGACCATCATCCTTTTTTGT
GGGAGAGAAGAGAAAAAGAGTCTCAGAAAAGCAGGAAATGCTTGATGTGTTGCGTGCCGGCATGAACATGCAGTACGAGCAAATCGTGAGGATTGTTGATTGA

mRNA sequence

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Protein sequence

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MHLKLPGCPITSTTVIDTRVKSLKRQYQAIAEMLGNTCSGFSWNDKYKCIEVEPTVFYNWVQAHPNAKGLNNKPFPHYDDLAYIFGKDRACESISQSARDIAEEDLNTEV
GEAGGSQEYYIPEIPVAEEEDPNTPTSRVARPSSFFVGEKRKRVSEKQEMLDVLRAGMNMQYEQIVRIVD

Sed0007178 (gene) of Chayote v1 genome