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Sed0007200 (gene) of Chayote v1 genome

Gene IDSed0007200
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan peptide 23-like
Genome locationLG09:37867045..37867236
RNA-Seq ExpressionSed0007200
SyntenySed0007200
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025661.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-1585.71Show/hide
Query:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
        MEMKK ACA LF AATV+AVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVS VA++ N
Subjt:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
XP_022933008.1 arabinogalactan peptide 23-like [Cucurbita moschata]3.0e-1688.89Show/hide
Query:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
        MEMKK ACA LF AATV+AVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVSLVAY+ N
Subjt:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
XP_022960230.1 arabinogalactan peptide 23-like [Cucurbita moschata]3.3e-1584.13Show/hide
Query:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
        MEMKK ACA LF AAT++AVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVS VA++ N
Subjt:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
XP_023004714.1 arabinogalactan peptide 23-like [Cucurbita maxima]5.0e-1687.3Show/hide
Query:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
        MEMKK ACA LF AATV+AVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVS VAY+ N
Subjt:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
XP_038899473.1 arabinogalactan protein 23-like [Benincasa hispida]4.3e-1584.13Show/hide
Query:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
        MEMKK ACA LF AA VS+ VA+DESLSPAAAPGPSSAASA LPALGSLVGASLV+ VAYFLN
Subjt:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
TrEMBL top hitse value%identityAlignment
A0A6J1F3F5 arabinogalactan peptide 23-like1.4e-1688.89Show/hide
Query:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
        MEMKK ACA LF AATV+AVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVSLVAY+ N
Subjt:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
A0A6J1H8I1 arabinogalactan peptide 23-like1.6e-1584.13Show/hide
Query:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
        MEMKK ACA LF AAT++AVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVS VA++ N
Subjt:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
A0A6J1IYE9 arabinogalactan peptide 23-like8.7e-1480.95Show/hide
Query:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
        MEMK  AC  LF AA V+AVVASDES SPAAAPGPSSAASA LPALGSL+GASLVS VAY LN
Subjt:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
A0A6J1J6Y9 arabinogalactan peptide 23-like3.1e-1172.58Show/hide
Query:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFL
        MEMKK ACA LF AATVSAVVA DE+L+P  APGPSS A+AGLPA+GS +GASL+S+ AY+L
Subjt:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFL
A0A6J1KX42 arabinogalactan peptide 23-like2.4e-1687.3Show/hide
Query:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
        MEMKK ACA LF AATV+AVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVS VAY+ N
Subjt:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 231.7e-1166.67Show/hide
Query:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
        MEMKK AC  LF AA+++AV+A++E  +P  APGP+SAASA LPALGSLVGASLVSL +Y+L+
Subjt:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)1.3e-0960.94Show/hide
Query:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGP-SSAASAGLPALGSLVGASLVSLVAYFLN
        MEMKK AC  +F AA+++AV+A++     A APGP +S AS  +PALGSLVGASLVSL AY+LN
Subjt:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGP-SSAASAGLPALGSLVGASLVSLVAYFLN
AT3G57690.1 arabinogalactan protein 231.2e-1266.67Show/hide
Query:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN
        MEMKK AC  LF AA+++AV+A++E  +P  APGP+SAASA LPALGSLVGASLVSL +Y+L+
Subjt:  MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGTTTGCCTGTGCTACCCTCTTCGTTGCCGCTACCGTCTCTGCGGTCGTGGCCTCCGATGAGTCTCTCTCCCCGGCTGCAGCACCGGGGCCGAGCAG
CGCCGCCTCTGCTGGTCTTCCCGCTCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTAGTTGCATACTTCTTGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAAGTTTGCCTGTGCTACCCTCTTCGTTGCCGCTACCGTCTCTGCGGTCGTGGCCTCCGATGAGTCTCTCTCCCCGGCTGCAGCACCGGGGCCGAGCAG
CGCCGCCTCTGCTGGTCTTCCCGCTCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTAGTTGCATACTTCTTGAACTGA
Protein sequenceShow/hide protein sequence
MEMKKFACATLFVAATVSAVVASDESLSPAAAPGPSSAASAGLPALGSLVGASLVSLVAYFLN