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Sed0007235 (gene) of Chayote v1 genome

Gene IDSed0007235
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG01:32921521..32921841
RNA-Seq ExpressionSed0007235
SyntenySed0007235
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR025314 - Domain of unknown function DUF4219


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026102.1 putative copia-type polyprotein [Cucumis melo var. makuwa]5.5e-3983.5Show/hide
Query:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW
        MANNN+VPFQVPRLTKENYSSWCIRMK LLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGAT  TA     W
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW

Query:  RIL
        +IL
Subjt:  RIL
KAA0038956.1 copia protein [Cucumis melo var. makuwa]2.1e-3882.52Show/hide
Query:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW
        MANNN+VP QVPRLTKENYSSWCIRMK LLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGAT  TA     W
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW

Query:  RIL
        +IL
Subjt:  RIL
KAA0051409.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.2e-3983.5Show/hide
Query:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW
        MANNN+VPFQVPRLTKENYSSWCIRMK LLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGAT  TA     W
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW

Query:  RIL
        +IL
Subjt:  RIL
KAA0062322.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.5e-3983.5Show/hide
Query:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW
        MANNN+VPFQVPRLTKENYSSWCIRMK LLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGAT  TA     W
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW

Query:  RIL
        +IL
Subjt:  RIL
TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.5e-3983.5Show/hide
Query:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW
        MANNN+VPFQVPRLTKENYSSWCIRMK LLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGAT  TA     W
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW

Query:  RIL
        +IL
Subjt:  RIL
TrEMBL top hitse value%identityAlignment
A0A5A7SLT1 Putative copia-type polyprotein2.6e-3983.5Show/hide
Query:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW
        MANNN+VPFQVPRLTKENYSSWCIRMK LLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGAT  TA     W
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW

Query:  RIL
        +IL
Subjt:  RIL
A0A5A7TA92 Copia protein1.0e-3882.52Show/hide
Query:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW
        MANNN+VP QVPRLTKENYSSWCIRMK LLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGAT  TA     W
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW

Query:  RIL
        +IL
Subjt:  RIL
A0A5A7UDA0 Retrovirus-related Pol polyprotein from transposon TNT 1-942.0e-3983.5Show/hide
Query:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW
        MANNN+VPFQVPRLTKENYSSWCIRMK LLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGAT  TA     W
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW

Query:  RIL
        +IL
Subjt:  RIL
A0A5A7V277 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-3983.5Show/hide
Query:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW
        MANNN+VPFQVPRLTKENYSSWCIRMK LLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGAT  TA     W
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW

Query:  RIL
        +IL
Subjt:  RIL
A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-3983.5Show/hide
Query:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW
        MANNN+VPFQVPRLTKENYSSWCIRMK LLGSQD W+IV  GY+EPE+DAALNQAQREALQNTRKKDQKALTIIHQAIDD NFEKISGAT  TA     W
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFW

Query:  RIL
        +IL
Subjt:  RIL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48720.1 unknown protein2.8e-2553.61Show/hide
Query:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHG
        MA+NN VPFQVP LTK NY +W +RMK +LG+ D WEIV++G+ EPEN+ +L+Q Q++ L+++RK+D+KAL +I+Q +D+  FEK+  AT  +AK G
Subjt:  MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAACAACAATATGGTTCCTTTCCAAGTGCCTCGCTTGACGAAGGAAAATTATAGTAGTTGGTGTATTCGAATGAAAGTGCTACTTGGTTCACAAGATGCTTGGGA
AATTGTTGATAGAGGCTACGACGAGCCTGAAAATGACGCGGCTTTAAATCAAGCGCAAAGAGAAGCTTTGCAAAATACAAGAAAGAAAGATCAAAAGGCACTCACCATTA
TTCATCAAGCAATTGATGATACAAATTTTGAGAAGATTTCTGGAGCAACTCTCATGACGGCGAAGCATGGAAAATTTTGGAGAATACTTATAAAGGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAACAACAATATGGTTCCTTTCCAAGTGCCTCGCTTGACGAAGGAAAATTATAGTAGTTGGTGTATTCGAATGAAAGTGCTACTTGGTTCACAAGATGCTTGGGA
AATTGTTGATAGAGGCTACGACGAGCCTGAAAATGACGCGGCTTTAAATCAAGCGCAAAGAGAAGCTTTGCAAAATACAAGAAAGAAAGATCAAAAGGCACTCACCATTA
TTCATCAAGCAATTGATGATACAAATTTTGAGAAGATTTCTGGAGCAACTCTCATGACGGCGAAGCATGGAAAATTTTGGAGAATACTTATAAAGGTGTAG
Protein sequenceShow/hide protein sequence
MANNNMVPFQVPRLTKENYSSWCIRMKVLLGSQDAWEIVDRGYDEPENDAALNQAQREALQNTRKKDQKALTIIHQAIDDTNFEKISGATLMTAKHGKFWRILIKV