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Sed0007300 (gene) of Chayote v1 genome

Gene IDSed0007300
OrganismSechium edule (Chayote v1)
DescriptionRING-H2 finger protein ATL56-like
Genome locationLG08:37787168..37788125
RNA-Seq ExpressionSed0007300
SyntenySed0007300
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ17332.1 putative transcription factor C2H2 family [Rosa chinensis]7.1e-3155.73Show/hide
Query:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRG----ERGGIILWRR---RKRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNC
        MVMEIV+S +L+ V IAVLV IH+CIVG  F G    +  G+++ RR    KR+S E+L  LPC++Y   EK   D  +EC VCLE  K GE+CRLLPNC
Subjt:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRG----ERGGIILWRR---RKRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNC

Query:  SHTFHVECIDSWLLKRPICPICRTCAAVPKI
         H+FH +CIDSWLLK P+CP+CR+C   PKI
Subjt:  SHTFHVECIDSWLLKRPICPICRTCAAVPKI

TQD76870.1 hypothetical protein C1H46_037576 [Malus baccata]7.1e-3152.17Show/hide
Query:  MEIVVSAVLMLVAIAVLVAIHLCIVGVMF-RGERGGIILWRRR-----KRLSKEDLEKLPCYEYKLEEK-QRVDLDLECVVCLEGFKMGERCRLLPNCSH
        MEI++S +L+ V +AVLV IH+CI+G  F RG   G+ L +R      K++S E+L  LPC++Y  EEK    +  ++C VCLE FK GE+CRLLPNC H
Subjt:  MEIVVSAVLMLVAIAVLVAIHLCIVGVMF-RGERGGIILWRRR-----KRLSKEDLEKLPCYEYKLEEK-QRVDLDLECVVCLEGFKMGERCRLLPNCSH

Query:  TFHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQNG
        +FH +CIDSWLLK P+CP+CRTCA  PKI + L   +G
Subjt:  TFHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQNG

XP_022954431.1 RING-H2 finger protein ATL56-like [Cucurbita moschata]4.9e-4878.52Show/hide
Query:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRR--KRLSKEDLEKLPCYEYKLEEKQRVD-LDLECVVCLEGFKMGERCRLLPNCSHTF
        MVMEIVVSAVL+LV IAVLV IH+CIVG  FRGER GI  WR    K LS +DLEKLPCYEYK  EKQ  + +DLECVVCLEGFK GERCRLLPNC H+F
Subjt:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRR--KRLSKEDLEKLPCYEYKLEEKQRVD-LDLECVVCLEGFKMGERCRLLPNCSHTF

Query:  HVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN
        HVECIDSWLLK PICPICRTCA VPK GLVLEHQN
Subjt:  HVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN

XP_022994122.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]1.7e-4879.26Show/hide
Query:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRR--KRLSKEDLEKLPCYEYKLEEKQRVD-LDLECVVCLEGFKMGERCRLLPNCSHTF
        MVMEIVVSAVL+LV IAVLV IH+CIVG  FRGER GI  WR    K LS +DLEKLPCYEYK  EKQ  + +DLECVVCLEGFK GERCRLLPNC H+F
Subjt:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRR--KRLSKEDLEKLPCYEYKLEEKQRVD-LDLECVVCLEGFKMGERCRLLPNCSHTF

Query:  HVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN
        HVECIDSWLLK PICPICRTCAAVPK GLVLEHQN
Subjt:  HVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN

XP_030475587.1 RING-H2 finger protein ATL56-like [Syzygium oleosum]3.2e-3161.72Show/hide
Query:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFR--GERGGIILWRRRK---RLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSH
        MVMEI+VS VL+ V IAVLV IH+CIVG  FR  G RGG++         +LS EDL+KLPC+EY  EEK     D++C VCLE FK GE+CRLLPNC H
Subjt:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFR--GERGGIILWRRRK---RLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSH

Query:  TFHVECIDSWLLKRPICPICRTCAAVPK
         FH +CIDSWLLK PICPICRT  A P+
Subjt:  TFHVECIDSWLLKRPICPICRTCAAVPK

TrEMBL top hitse value%identityAlignment
A0A2P6P601 Putative transcription factor C2H2 family3.4e-3155.73Show/hide
Query:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRG----ERGGIILWRR---RKRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNC
        MVMEIV+S +L+ V IAVLV IH+CIVG  F G    +  G+++ RR    KR+S E+L  LPC++Y   EK   D  +EC VCLE  K GE+CRLLPNC
Subjt:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRG----ERGGIILWRR---RKRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNC

Query:  SHTFHVECIDSWLLKRPICPICRTCAAVPKI
         H+FH +CIDSWLLK P+CP+CR+C   PKI
Subjt:  SHTFHVECIDSWLLKRPICPICRTCAAVPKI

A0A314YMI1 RING-type domain-containing protein3.4e-3155.56Show/hide
Query:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMF-RGERGGIILWRRR---KRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHT
        MVMEI++S +L+ VAIAVLV IH+CIV + F RG +G  I+ R     KR++ E+L  LPC++Y   EK    +D  C +CLE FK GERCR LPNC H+
Subjt:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMF-RGERGGIILWRRR---KRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHT

Query:  FHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQ
        FH +CIDSWLLK P+CP+CRTCA  PKI + L  Q
Subjt:  FHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQ

A0A540KRN2 RING-type domain-containing protein3.4e-3152.17Show/hide
Query:  MEIVVSAVLMLVAIAVLVAIHLCIVGVMF-RGERGGIILWRRR-----KRLSKEDLEKLPCYEYKLEEK-QRVDLDLECVVCLEGFKMGERCRLLPNCSH
        MEI++S +L+ V +AVLV IH+CI+G  F RG   G+ L +R      K++S E+L  LPC++Y  EEK    +  ++C VCLE FK GE+CRLLPNC H
Subjt:  MEIVVSAVLMLVAIAVLVAIHLCIVGVMF-RGERGGIILWRRR-----KRLSKEDLEKLPCYEYKLEEK-QRVDLDLECVVCLEGFKMGERCRLLPNCSH

Query:  TFHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQNG
        +FH +CIDSWLLK P+CP+CRTCA  PKI + L   +G
Subjt:  TFHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQNG

A0A6J1GQW8 RING-H2 finger protein ATL56-like2.4e-4878.52Show/hide
Query:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRR--KRLSKEDLEKLPCYEYKLEEKQRVD-LDLECVVCLEGFKMGERCRLLPNCSHTF
        MVMEIVVSAVL+LV IAVLV IH+CIVG  FRGER GI  WR    K LS +DLEKLPCYEYK  EKQ  + +DLECVVCLEGFK GERCRLLPNC H+F
Subjt:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRR--KRLSKEDLEKLPCYEYKLEEKQRVD-LDLECVVCLEGFKMGERCRLLPNCSHTF

Query:  HVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN
        HVECIDSWLLK PICPICRTCA VPK GLVLEHQN
Subjt:  HVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN

A0A6J1JUU5 RING-H2 finger protein ATL56-like8.2e-4979.26Show/hide
Query:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRR--KRLSKEDLEKLPCYEYKLEEKQRVD-LDLECVVCLEGFKMGERCRLLPNCSHTF
        MVMEIVVSAVL+LV IAVLV IH+CIVG  FRGER GI  WR    K LS +DLEKLPCYEYK  EKQ  + +DLECVVCLEGFK GERCRLLPNC H+F
Subjt:  MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRR--KRLSKEDLEKLPCYEYKLEEKQRVD-LDLECVVCLEGFKMGERCRLLPNCSHTF

Query:  HVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN
        HVECIDSWLLK PICPICRTCAAVPK GLVLEHQN
Subjt:  HVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN

SwissProt top hitse value%identityAlignment
P0C034 RING-H2 finger protein ATL105.3e-1347.3Show/hide
Query:  KRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRTC
        K + K+ L   P   Y   E     LD ECV+CL  F  GE+ RLLP C+H FHV CID WL +   CP CR C
Subjt:  KRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRTC

Q8LBA0 NEP1-interacting protein-like 21.2e-1247.14Show/hide
Query:  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICR
        LS + L KLPCY    E  +R      C +CL+  K GE  R LP C HTFH+ C+D WL++   CPICR
Subjt:  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICR

Q9SJJ7 RING-H2 finger protein ATL575.3e-1340.54Show/hide
Query:  RKRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRT
        R+ L  + +  LP Y Y    KQR +   +CV+CL  F+ GE  +++P+C H FHV+C+D+WL     CP+CR+
Subjt:  RKRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRT

Q9SN27 E3 ubiquitin-protein ligase ATL591.2e-1243.02Show/hide
Query:  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN
        LSK+  E LP   YK  E   V+ D +C VCL  ++  E+ + +P+C HTFH+ECID WL     CP+CR  + +PK  + L HQ+
Subjt:  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN

Q9SN28 RING-H2 finger protein ATL75.3e-1341.86Show/hide
Query:  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN
        LSK+  E LP   YK   +  +  D +C VCL  ++  E+ + +P+C HTFH+ECID WL     CP+CR  + +PK  L L HQ+
Subjt:  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN

Arabidopsis top hitse value%identityAlignment
AT1G49220.1 RING/U-box superfamily protein3.8e-1447.3Show/hide
Query:  KRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRTC
        K + K+ L   P   Y   E     LD ECV+CL  F  GE+ RLLP C+H FHV CID WL +   CP CR C
Subjt:  KRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRTC

AT1G74410.1 RING/U-box superfamily protein8.4e-1447.14Show/hide
Query:  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICR
        LS + L KLPCY    E  +R      C +CL+  K GE  R LP C HTFH+ C+D WL++   CPICR
Subjt:  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICR

AT2G27940.1 RING/U-box superfamily protein3.8e-1440.54Show/hide
Query:  RKRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRT
        R+ L  + +  LP Y Y    KQR +   +CV+CL  F+ GE  +++P+C H FHV+C+D+WL     CP+CR+
Subjt:  RKRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRT

AT4G10150.1 RING/U-box superfamily protein3.8e-1441.86Show/hide
Query:  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN
        LSK+  E LP   YK   +  +  D +C VCL  ++  E+ + +P+C HTFH+ECID WL     CP+CR  + +PK  L L HQ+
Subjt:  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN

AT4G10160.1 RING/U-box superfamily protein8.4e-1443.02Show/hide
Query:  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN
        LSK+  E LP   YK  E   V+ D +C VCL  ++  E+ + +P+C HTFH+ECID WL     CP+CR  + +PK  + L HQ+
Subjt:  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAATGGAGATTGTCGTGTCGGCGGTTCTGATGCTGGTCGCGATCGCGGTTTTGGTGGCGATTCATCTGTGTATTGTTGGGGTGATGTTCAGAGGAGAAAGGGGAGG
GATTATTCTATGGAGAAGAAGAAAGAGACTTTCAAAGGAGGATTTGGAGAAGCTTCCTTGTTATGAGTACAAGTTGGAGGAAAAACAGAGGGTTGATTTGGATTTGGAAT
GTGTGGTTTGTTTGGAGGGTTTCAAAATGGGGGAAAGATGCAGATTGTTGCCTAATTGTAGCCATACTTTTCATGTTGAGTGTATAGATTCTTGGCTTTTGAAGAGACCC
ATTTGCCCAATTTGCAGAACTTGTGCTGCTGTTCCCAAAATTGGCTTGGTTTTGGAGCACCAAAATGGTGGGGTTTTGCCAAATTGA
mRNA sequenceShow/hide mRNA sequence
TCACAGTAGTTGTCAATTGCTCAGCCTCTCTGTCTTATTTTGGATTTCCTAAAGGGTGTTTAAGAAAATAGAGGAATTTGTGACACTAAAAAAGGACAAGAGCCAGAAGA
ACACTCAATACCATCATTATCATCATCACCCTATGTTGATTTTACCACAGTGATATCACCCACCCCTTTTTCTTTTTGTCAATAAAAACAAAACTCAAAAAAGGTGTAAG
CTTGAAGATCCAAAAATGAGCAGTTTCCACAACTGACATAAACTTTCAAACAAAACACAGAGACCCACAAAAACTTCATCTTTCCCTAAAAAACTTGTGAGATTGGTTGG
TTTTTTTGGATTTCAAGAACTATGGTAATGGAGATTGTCGTGTCGGCGGTTCTGATGCTGGTCGCGATCGCGGTTTTGGTGGCGATTCATCTGTGTATTGTTGGGGTGAT
GTTCAGAGGAGAAAGGGGAGGGATTATTCTATGGAGAAGAAGAAAGAGACTTTCAAAGGAGGATTTGGAGAAGCTTCCTTGTTATGAGTACAAGTTGGAGGAAAAACAGA
GGGTTGATTTGGATTTGGAATGTGTGGTTTGTTTGGAGGGTTTCAAAATGGGGGAAAGATGCAGATTGTTGCCTAATTGTAGCCATACTTTTCATGTTGAGTGTATAGAT
TCTTGGCTTTTGAAGAGACCCATTTGCCCAATTTGCAGAACTTGTGCTGCTGTTCCCAAAATTGGCTTGGTTTTGGAGCACCAAAATGGTGGGGTTTTGCCAAATTGAAC
TCTTTTTGGAACAGTTTTTCGATCAAGTTCCGCCGCCCGGTGCGGTGGCCGGAGAAAGATGAAGCGCCGCCGTTTCTGTCTGTAAGTGGGGTCGAAGTTTTTTTTCACTG
TAATGGGTGAAAAAGTTGGAGAAGTTGGCAAAGGCAAGAGGCTAAGAAGAAGAGTTAAGAAAAAGTAAGTTAATGGAG
Protein sequenceShow/hide protein sequence
MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRRKRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRP
ICPICRTCAAVPKIGLVLEHQNGGVLPN