CuGenDBv2

Gene ID	Sed0007321
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	Contig00297:108907..109188
RNA-Seq Expression	Sed0007321
Synteny	Sed0007321
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001014 - Ribosomal protein L23/L25, conserved site IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

YP_003359400.1 ribosomal protein L23 [Olea europaea]

9.0e-46

98.92

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSI+LLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

YP_009461770.1 ribosomal protein L23 [Chionanthus parkinsonii]

3.1e-46

100

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Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

YP_009556542.1 ribosomal protein L2 [Rhabdodendron amazonicum]

3.1e-46

100

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Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

YP_009563030.1 50S ribosomal protein L23 [Huodendron biaristatum]

1.2e-45

97.85

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Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYA+FTDKSI+LLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

YP_009570485.1 ribosomal protein L23 [Berberidopsis corallina]

1.2e-45

97.85

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSI+LLGKNQYTSNVESGSTRTEIKHW+ELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

TrEMBL top hits

e value

%identity

Alignment

A0A2K9RP62 50S ribosomal protein L23, chloroplastic

1.5e-46

100

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

A0A2L0VCX1 50S ribosomal protein L23

4.4e-46

98.92

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSI+LLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

A0A411K5D6 Ribosomal protein L2

1.5e-46

100

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

A0A4D5Y878 50S ribosomal protein L23, chloroplastic

4.4e-46

98.92

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSI+LLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

F5C018 50S ribosomal protein L23, chloroplastic

4.4e-46

98.92

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSI+LLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

SwissProt top hits

e value

%identity

Alignment

Q06R67 50S ribosomal protein L23, chloroplastic

3.4e-48

97.85

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFT+KSI+LLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Q09FP7 50S ribosomal protein L23, chloroplastic

4.5e-48

97.85

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSI+LLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Q0PUX7 50S ribosomal protein L23, chloroplastic

4.5e-48

97.85

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSI+LLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGP MGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Q0ZIV5 50S ribosomal protein L23, chloroplastic

1.2e-48

98.92

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSI+LLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Q4VZK6 50S ribosomal protein L23, chloroplastic

1.2e-48

98.92

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSI+LLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00840.1 ribosomal protein L23.1

2.3e-47

94.62

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSI+LLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGK +RMGPI+GHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

ATCG01300.1 ribosomal protein L23

2.3e-47

94.62

Show/hide

Query:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSI+LLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGK +RMGPI+GHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCAGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCA
TTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGAC
GTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MDGIKYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Sed0007321 (gene) of Chayote v1 genome